EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000036367 (Gene tree)
Gene ID: 100525398
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 2717 bases
Position: chr6:858888-861604
Accession: 100525398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000038909	RRM_1	PF00076.22	5.7e-17	1	1
ENSSSCP00000021913	RRM_1	PF00076.22	6e-17	1	1
ENSSSCP00000021715	RRM_1	PF00076.22	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000023360	PABPN1L-201	840	XM_013994396	ENSSSCP00000021913	279 (aa)	XP_013849850	I3LCY5
ENSSSCT00000030389	PABPN1L-203	777	-	ENSSSCP00000021715	258 (aa)	-	I3LCE0
ENSSSCT00000037058	PABPN1L-202	807	-	ENSSSCP00000038909	268 (aa)	-	A0A287A4L7

Gene Model

Click here to download ENSSSCG00000036367's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG
ssc05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000036367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000036367	PABPN1L	74	49.754	ENSSSCG00000002023	PABPN1	64	43.216
ENSSSCG00000036367	PABPN1L	60	47.904	ENSSSCG00000034805	-	64	47.904

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000036367	PABPN1L	100	68.085	ENSG00000205022	PABPN1L	100	67.376	Homo_sapiens
ENSSSCG00000036367	PABPN1L	54	56.667	ENSAPOG00000000685	PABPN1L	53	53.012	Acanthochromis_polyacanthus
ENSSSCG00000036367	PABPN1L	54	55.333	ENSACIG00000021400	PABPN1L	72	60.769	Amphilophus_citrinellus
ENSSSCG00000036367	PABPN1L	63	48.000	ENSAOCG00000019844	PABPN1L	78	42.723	Amphiprion_ocellaris
ENSSSCG00000036367	PABPN1L	63	48.000	ENSAPEG00000019534	PABPN1L	78	42.723	Amphiprion_percula
ENSSSCG00000036367	PABPN1L	55	58.278	ENSATEG00000011646	PABPN1L	64	52.727	Anabas_testudineus
ENSSSCG00000036367	PABPN1L	72	59.596	ENSACAG00000013250	PABPN1L	99	53.365	Anolis_carolinensis
ENSSSCG00000036367	PABPN1L	100	65.125	ENSANAG00000038178	PABPN1L	100	66.065	Aotus_nancymaae
ENSSSCG00000036367	PABPN1L	76	46.009	ENSACLG00000025147	PABPN1L	78	41.232	Astatotilapia_calliptera
ENSSSCG00000036367	PABPN1L	54	55.782	ENSAMXG00000010873	PABPN1L	61	54.938	Astyanax_mexicanus
ENSSSCG00000036367	PABPN1L	53	82.979	ENSBTAG00000006727	-	86	82.517	Bos_taurus
ENSSSCG00000036367	PABPN1L	100	73.134	ENSBTAG00000023752	-	100	75.185	Bos_taurus
ENSSSCG00000036367	PABPN1L	100	66.197	ENSCJAG00000045284	PABPN1L	100	60.563	Callithrix_jacchus
ENSSSCG00000036367	PABPN1L	100	75.269	ENSCHIG00000013987	PABPN1L	100	72.202	Capra_hircus
ENSSSCG00000036367	PABPN1L	95	62.825	ENSCAPG00000007240	PABPN1L	96	63.813	Cavia_aperea
ENSSSCG00000036367	PABPN1L	90	65.060	ENSCPOG00000025951	PABPN1L	100	59.498	Cavia_porcellus
ENSSSCG00000036367	PABPN1L	100	67.730	ENSCCAG00000027631	PABPN1L	100	66.667	Cebus_capucinus
ENSSSCG00000036367	PABPN1L	100	68.683	ENSCATG00000031060	PABPN1L	100	68.953	Cercocebus_atys
ENSSSCG00000036367	PABPN1L	100	68.231	ENSCLAG00000000704	PABPN1L	100	61.071	Chinchilla_lanigera
ENSSSCG00000036367	PABPN1L	100	66.330	ENSCSAG00000002881	PABPN1L	100	64.527	Chlorocebus_sabaeus
ENSSSCG00000036367	PABPN1L	72	56.923	ENSCPBG00000023441	PABPN1L	61	55.612	Chrysemys_picta_bellii
ENSSSCG00000036367	PABPN1L	100	67.616	ENSCANG00000039336	PABPN1L	100	66.429	Colobus_angolensis_palliatus
ENSSSCG00000036367	PABPN1L	100	68.683	ENSCGRG00001013211	Pabpn1l	100	69.149	Cricetulus_griseus_chok1gshd
ENSSSCG00000036367	PABPN1L	100	68.683	ENSCGRG00000015868	Pabpn1l	100	69.149	Cricetulus_griseus_crigri
ENSSSCG00000036367	PABPN1L	63	47.159	ENSCSEG00000001142	pabpn1l	70	47.917	Cynoglossus_semilaevis
ENSSSCG00000036367	PABPN1L	100	60.071	ENSDNOG00000034677	PABPN1L	100	57.500	Dasypus_novemcinctus
ENSSSCG00000036367	PABPN1L	100	75.458	ENSEASG00005000777	PABPN1L	100	73.260	Equus_asinus_asinus
ENSSSCG00000036367	PABPN1L	100	75.824	ENSECAG00000000378	PABPN1L	100	73.626	Equus_caballus
ENSSSCG00000036367	PABPN1L	100	63.433	ENSEEUG00000004747	PABPN1L	100	63.433	Erinaceus_europaeus
ENSSSCG00000036367	PABPN1L	59	50.932	ENSELUG00000018385	PABPN1L	66	51.977	Esox_lucius
ENSSSCG00000036367	PABPN1L	100	75.532	ENSFCAG00000010465	PABPN1L	100	75.177	Felis_catus
ENSSSCG00000036367	PABPN1L	74	58.621	ENSFALG00000003319	PABPN1L	77	57.513	Ficedula_albicollis
ENSSSCG00000036367	PABPN1L	100	67.883	ENSFDAG00000021067	PABPN1L	100	60.714	Fukomys_damarensis
ENSSSCG00000036367	PABPN1L	58	50.610	ENSFHEG00000018295	PABPN1L	75	42.347	Fundulus_heteroclitus
ENSSSCG00000036367	PABPN1L	54	53.595	ENSGMOG00000001475	PABPN1L	62	54.217	Gadus_morhua
ENSSSCG00000036367	PABPN1L	52	70.922	ENSGALG00000006242	PABPN1L	73	70.312	Gallus_gallus
ENSSSCG00000036367	PABPN1L	63	51.397	ENSGACG00000015428	PABPN1L	79	43.379	Gasterosteus_aculeatus
ENSSSCG00000036367	PABPN1L	59	62.025	ENSGAGG00000010613	PABPN1L	53	61.006	Gopherus_agassizii
ENSSSCG00000036367	PABPN1L	100	67.143	ENSGGOG00000012670	PABPN1L	100	67.266	Gorilla_gorilla
ENSSSCG00000036367	PABPN1L	76	46.009	ENSHBUG00000002388	PABPN1L	78	42.254	Haplochromis_burtoni
ENSSSCG00000036367	PABPN1L	96	66.031	ENSHGLG00000014207	PABPN1L	95	68.675	Heterocephalus_glaber_female
ENSSSCG00000036367	PABPN1L	96	66.031	ENSHGLG00100005230	PABPN1L	95	68.675	Heterocephalus_glaber_male
ENSSSCG00000036367	PABPN1L	54	53.642	ENSIPUG00000023583	PABPN1L	88	47.701	Ictalurus_punctatus
ENSSSCG00000036367	PABPN1L	100	65.125	ENSSTOG00000020814	PABPN1L	100	62.143	Ictidomys_tridecemlineatus
ENSSSCG00000036367	PABPN1L	100	67.754	ENSJJAG00000006433	Pabpn1l	100	64.388	Jaculus_jaculus
ENSSSCG00000036367	PABPN1L	63	48.023	ENSLBEG00000011647	PABPN1L	66	49.468	Labrus_bergylta
ENSSSCG00000036367	PABPN1L	77	65.315	ENSLAFG00000025902	-	86	62.727	Loxodonta_africana
ENSSSCG00000036367	PABPN1L	100	68.327	ENSMFAG00000002924	PABPN1L	100	68.571	Macaca_fascicularis
ENSSSCG00000036367	PABPN1L	100	67.025	ENSMMUG00000012438	PABPN1L	100	68.100	Macaca_mulatta
ENSSSCG00000036367	PABPN1L	100	67.857	ENSMNEG00000044808	PABPN1L	100	68.929	Macaca_nemestrina
ENSSSCG00000036367	PABPN1L	100	67.972	ENSMLEG00000032667	PABPN1L	100	68.214	Mandrillus_leucophaeus
ENSSSCG00000036367	PABPN1L	76	46.009	ENSMZEG00005002186	PABPN1L	78	41.232	Maylandia_zebra
ENSSSCG00000036367	PABPN1L	100	66.052	ENSMAUG00000014032	Pabpn1l	100	65.480	Mesocricetus_auratus
ENSSSCG00000036367	PABPN1L	100	72.887	ENSMICG00000028179	PABPN1L	100	71.886	Microcebus_murinus
ENSSSCG00000036367	PABPN1L	100	68.345	ENSMOCG00000007955	Pabpn1l	100	67.376	Microtus_ochrogaster
ENSSSCG00000036367	PABPN1L	100	52.500	ENSMODG00000003873	-	100	46.127	Monodelphis_domestica
ENSSSCG00000036367	PABPN1L	65	49.171	ENSMALG00000016926	PABPN1L	78	42.991	Monopterus_albus
ENSSSCG00000036367	PABPN1L	100	63.768	MGP_CAROLIEiJ_G0031670	Pabpn1l	100	62.681	Mus_caroli
ENSSSCG00000036367	PABPN1L	100	63.768	ENSMUSG00000069867	Pabpn1l	100	57.401	Mus_musculus
ENSSSCG00000036367	PABPN1L	100	64.855	MGP_PahariEiJ_G0023268	Pabpn1l	100	63.768	Mus_pahari
ENSSSCG00000036367	PABPN1L	100	64.621	MGP_SPRETEiJ_G0032788	Pabpn1l	100	60.714	Mus_spretus
ENSSSCG00000036367	PABPN1L	96	58.824	ENSMLUG00000003228	PABPN1L	84	63.025	Myotis_lucifugus
ENSSSCG00000036367	PABPN1L	100	69.675	ENSNGAG00000023992	Pabpn1l	100	69.455	Nannospalax_galili
ENSSSCG00000036367	PABPN1L	54	55.333	ENSNBRG00000017078	PABPN1L	54	60.769	Neolamprologus_brichardi
ENSSSCG00000036367	PABPN1L	100	69.784	ENSOPRG00000005597	PABPN1L	100	62.411	Ochotona_princeps
ENSSSCG00000036367	PABPN1L	100	61.856	ENSODEG00000004649	PABPN1L	94	63.178	Octodon_degus
ENSSSCG00000036367	PABPN1L	100	54.244	ENSOANG00000013901	PABPN1L	100	54.244	Ornithorhynchus_anatinus
ENSSSCG00000036367	PABPN1L	73	50.254	ENSORLG00000026560	PABPN1L	75	44.776	Oryzias_latipes
ENSSSCG00000036367	PABPN1L	73	50.254	ENSORLG00020015068	PABPN1L	75	44.776	Oryzias_latipes_hni
ENSSSCG00000036367	PABPN1L	73	50.254	ENSORLG00015000397	PABPN1L	75	44.776	Oryzias_latipes_hsok
ENSSSCG00000036367	PABPN1L	76	48.113	ENSOMEG00000017896	PABPN1L	50	50.532	Oryzias_melastigma
ENSSSCG00000036367	PABPN1L	100	69.314	ENSOGAG00000000433	PABPN1L	100	69.203	Otolemur_garnettii
ENSSSCG00000036367	PABPN1L	100	73.115	ENSOARG00000013682	PABPN1L	100	74.426	Ovis_aries
ENSSSCG00000036367	PABPN1L	100	68.440	ENSPPAG00000028866	PABPN1L	100	67.730	Pan_paniscus
ENSSSCG00000036367	PABPN1L	100	74.468	ENSPPRG00000015106	PABPN1L	100	74.113	Panthera_pardus
ENSSSCG00000036367	PABPN1L	91	66.016	ENSPTIG00000015606	PABPN1L	98	65.098	Panthera_tigris_altaica
ENSSSCG00000036367	PABPN1L	100	68.440	ENSPTRG00000031120	PABPN1L	100	67.730	Pan_troglodytes
ENSSSCG00000036367	PABPN1L	100	68.085	ENSPANG00000026039	PABPN1L	100	67.857	Papio_anubis
ENSSSCG00000036367	PABPN1L	59	61.146	ENSPSIG00000003404	PABPN1L	75	64.865	Pelodiscus_sinensis
ENSSSCG00000036367	PABPN1L	52	55.921	ENSPMGG00000013927	PABPN1L	64	64.815	Periophthalmus_magnuspinnatus
ENSSSCG00000036367	PABPN1L	100	69.373	ENSPEMG00000016624	Pabpn1l	100	69.485	Peromyscus_maniculatus_bairdii
ENSSSCG00000036367	PABPN1L	53	66.901	ENSPCIG00000007038	-	90	61.538	Phascolarctos_cinereus
ENSSSCG00000036367	PABPN1L	100	66.548	ENSPPYG00000007655	PABPN1L	100	65.957	Pongo_abelii
ENSSSCG00000036367	PABPN1L	100	72.563	ENSPCOG00000024077	PABPN1L	100	71.174	Propithecus_coquereli
ENSSSCG00000036367	PABPN1L	100	72.535	ENSPVAG00000002716	PABPN1L	100	72.887	Pteropus_vampyrus
ENSSSCG00000036367	PABPN1L	76	46.009	ENSPNYG00000004803	PABPN1L	78	41.232	Pundamilia_nyererei
ENSSSCG00000036367	PABPN1L	100	66.912	ENSRNOG00000029558	Pabpn1l	100	65.809	Rattus_norvegicus
ENSSSCG00000036367	PABPN1L	100	68.794	ENSRBIG00000030740	PABPN1L	100	68.214	Rhinopithecus_bieti
ENSSSCG00000036367	PABPN1L	99	67.857	ENSRROG00000035483	-	99	67.754	Rhinopithecus_roxellana
ENSSSCG00000036367	PABPN1L	100	68.085	ENSRROG00000032240	-	100	67.143	Rhinopithecus_roxellana
ENSSSCG00000036367	PABPN1L	100	66.786	ENSSBOG00000018410	PABPN1L	100	67.143	Saimiri_boliviensis_boliviensis
ENSSSCG00000036367	PABPN1L	100	51.557	ENSSHAG00000010001	-	100	43.434	Sarcophilus_harrisii
ENSSSCG00000036367	PABPN1L	58	50.307	ENSSMAG00000021348	PABPN1L	61	51.479	Scophthalmus_maximus
ENSSSCG00000036367	PABPN1L	63	47.429	ENSSDUG00000006986	PABPN1L	78	41.784	Seriola_dumerili
ENSSSCG00000036367	PABPN1L	63	48.000	ENSSLDG00000021845	PABPN1L	78	42.254	Seriola_lalandi_dorsalis
ENSSSCG00000036367	PABPN1L	94	53.968	ENSSARG00000005178	-	95	55.603	Sorex_araneus
ENSSSCG00000036367	PABPN1L	71	60.000	ENSSPUG00000007031	PABPN1L	84	54.106	Sphenodon_punctatus
ENSSSCG00000036367	PABPN1L	76	46.479	ENSSPAG00000017978	PABPN1L	78	42.254	Stegastes_partitus
ENSSSCG00000036367	PABPN1L	59	51.852	ENSTRUG00000024725	PABPN1L	84	44.500	Takifugu_rubripes
ENSSSCG00000036367	PABPN1L	100	77.778	ENSTTRG00000004691	PABPN1L	100	79.433	Tursiops_truncatus
ENSSSCG00000036367	PABPN1L	60	50.556	ENSXETG00000011258	pabpn1l	96	45.755	Xenopus_tropicalis