EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000037254 (Gene tree)
Gene ID: 100522864
Gene Symbol: RNPC3
Alias: FLJ20008|KIAA1839|RBM40|SNRNP65
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 68790 bases
Position: chr4:115243183-115311972
Accession: 100522864
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000022251	RRM_1	PF00076.22	7.5e-18	1	2
ENSSSCP00000022251	RRM_1	PF00076.22	7.5e-18	2	2
ENSSSCP00000025012	RRM_1	PF00076.22	7.6e-18	1	2
ENSSSCP00000025012	RRM_1	PF00076.22	7.6e-18	2	2
ENSSSCP00000025539	RRM_1	PF00076.22	7.6e-18	1	2
ENSSSCP00000025539	RRM_1	PF00076.22	7.6e-18	2	2
ENSSSCP00000052569	RRM_1	PF00076.22	7.6e-18	1	2
ENSSSCP00000052569	RRM_1	PF00076.22	7.6e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000031693	RNPC3-202	4641	XM_005663631	ENSSSCP00000022251	514 (aa)	XP_005663688	F1S572
ENSSSCT00000026127	RNPC3-204	4963	XM_013997339	ENSSSCP00000025539	515 (aa)	XP_013852793	I3LLP2
ENSSSCT00000031651	RNPC3-203	5148	-	ENSSSCP00000025012	515 (aa)	-	I3LLP2
ENSSSCT00000057343	RNPC3-201	6658	XM_005663629	ENSSSCP00000052569	515 (aa)	XP_005663686	I3LLP2

Gene Model

Click here to download ENSSSCG00000037254's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000037254's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000037254	RNPC3	100	91.876	ENSG00000185946	RNPC3	100	93.514	Homo_sapiens
ENSSSCG00000037254	RNPC3	95	56.768	ENSAPOG00000017371	rnpc3	97	57.576	Acanthochromis_polyacanthus
ENSSSCG00000037254	RNPC3	98	92.534	ENSAMEG00000001694	RNPC3	100	92.885	Ailuropoda_melanoleuca
ENSSSCG00000037254	RNPC3	95	54.108	ENSACIG00000021043	rnpc3	97	52.047	Amphilophus_citrinellus
ENSSSCG00000037254	RNPC3	95	56.200	ENSAOCG00000014052	rnpc3	95	57.000	Amphiprion_ocellaris
ENSSSCG00000037254	RNPC3	95	56.000	ENSAPEG00000008739	rnpc3	95	56.800	Amphiprion_percula
ENSSSCG00000037254	RNPC3	95	53.968	ENSATEG00000021263	rnpc3	97	55.159	Anabas_testudineus
ENSSSCG00000037254	RNPC3	87	70.241	ENSAPLG00000015605	RNPC3	99	69.147	Anas_platyrhynchos
ENSSSCG00000037254	RNPC3	96	68.813	ENSACAG00000002029	RNPC3	97	68.191	Anolis_carolinensis
ENSSSCG00000037254	RNPC3	100	90.716	ENSANAG00000019950	RNPC3	100	91.876	Aotus_nancymaae
ENSSSCG00000037254	RNPC3	95	55.375	ENSACLG00000014702	rnpc3	96	53.649	Astatotilapia_calliptera
ENSSSCG00000037254	RNPC3	94	56.735	ENSAMXG00000033372	rnpc3	96	57.143	Astyanax_mexicanus
ENSSSCG00000037254	RNPC3	100	92.070	ENSBTAG00000019091	RNPC3	100	93.424	Bos_taurus
ENSSSCG00000037254	RNPC3	100	88.932	ENSCJAG00000035686	RNPC3	100	89.126	Callithrix_jacchus
ENSSSCG00000037254	RNPC3	100	91.892	ENSCAFG00000019972	RNPC3	100	93.243	Canis_familiaris
ENSSSCG00000037254	RNPC3	100	92.085	ENSCAFG00020011300	RNPC3	100	93.436	Canis_lupus_dingo
ENSSSCG00000037254	RNPC3	100	92.650	ENSCHIG00000020361	RNPC3	100	93.617	Capra_hircus
ENSSSCG00000037254	RNPC3	100	88.588	ENSTSYG00000030256	RNPC3	100	89.535	Carlito_syrichta
ENSSSCG00000037254	RNPC3	84	79.080	ENSCAPG00000013600	RNPC3	97	78.788	Cavia_aperea
ENSSSCG00000037254	RNPC3	100	87.234	ENSCPOG00000031638	RNPC3	100	88.975	Cavia_porcellus
ENSSSCG00000037254	RNPC3	100	90.716	ENSCCAG00000024301	RNPC3	100	91.876	Cebus_capucinus
ENSSSCG00000037254	RNPC3	98	70.611	ENSCATG00000035930	-	99	70.099	Cercocebus_atys
ENSSSCG00000037254	RNPC3	99	92.233	ENSCATG00000002086	RNPC3	99	93.204	Cercocebus_atys
ENSSSCG00000037254	RNPC3	100	87.767	ENSCLAG00000005169	RNPC3	100	89.126	Chinchilla_lanigera
ENSSSCG00000037254	RNPC3	99	92.039	ENSCSAG00000001519	RNPC3	99	93.010	Chlorocebus_sabaeus
ENSSSCG00000037254	RNPC3	98	68.859	ENSCPBG00000028311	RNPC3	99	68.665	Chrysemys_picta_bellii
ENSSSCG00000037254	RNPC3	95	38.039	ENSCING00000021276	-	98	38.618	Ciona_intestinalis
ENSSSCG00000037254	RNPC3	99	91.262	ENSCANG00000031444	RNPC3	99	92.233	Colobus_angolensis_palliatus
ENSSSCG00000037254	RNPC3	99	90.291	ENSCGRG00001019276	Rnpc3	100	89.709	Cricetulus_griseus_chok1gshd
ENSSSCG00000037254	RNPC3	87	90.687	ENSCGRG00000000053	Rnpc3	100	90.022	Cricetulus_griseus_crigri
ENSSSCG00000037254	RNPC3	94	54.990	ENSCSEG00000013475	rnpc3	96	53.069	Cynoglossus_semilaevis
ENSSSCG00000037254	RNPC3	94	53.678	ENSCVAG00000002645	rnpc3	97	53.269	Cyprinodon_variegatus
ENSSSCG00000037254	RNPC3	95	56.436	ENSDARG00000011247	rnpc3	93	65.318	Danio_rerio
ENSSSCG00000037254	RNPC3	100	90.135	ENSDNOG00000044555	-	100	91.473	Dasypus_novemcinctus
ENSSSCG00000037254	RNPC3	100	90.135	ENSDNOG00000047498	-	100	91.473	Dasypus_novemcinctus
ENSSSCG00000037254	RNPC3	99	89.147	ENSDORG00000027343	Rnpc3	99	89.341	Dipodomys_ordii
ENSSSCG00000037254	RNPC3	95	47.843	ENSEBUG00000002068	rnpc3	97	47.732	Eptatretus_burgeri
ENSSSCG00000037254	RNPC3	100	91.506	ENSEASG00005015957	RNPC3	100	91.699	Equus_asinus_asinus
ENSSSCG00000037254	RNPC3	100	91.506	ENSECAG00000021148	RNPC3	100	91.699	Equus_caballus
ENSSSCG00000037254	RNPC3	95	53.906	ENSELUG00000002264	rnpc3	97	54.102	Esox_lucius
ENSSSCG00000037254	RNPC3	100	92.650	ENSFCAG00000024312	RNPC3	100	93.617	Felis_catus
ENSSSCG00000037254	RNPC3	87	71.366	ENSFALG00000002580	RNPC3	99	72.249	Ficedula_albicollis
ENSSSCG00000037254	RNPC3	99	88.178	ENSFDAG00000019948	RNPC3	100	89.729	Fukomys_damarensis
ENSSSCG00000037254	RNPC3	95	52.429	ENSFHEG00000020647	rnpc3	98	52.632	Fundulus_heteroclitus
ENSSSCG00000037254	RNPC3	95	55.152	ENSGMOG00000019213	rnpc3	95	54.175	Gadus_morhua
ENSSSCG00000037254	RNPC3	95	71.515	ENSGALG00000005162	RNPC3	89	69.293	Gallus_gallus
ENSSSCG00000037254	RNPC3	95	52.918	ENSGAFG00000017236	rnpc3	96	51.852	Gambusia_affinis
ENSSSCG00000037254	RNPC3	95	55.110	ENSGACG00000002048	rnpc3	96	53.488	Gasterosteus_aculeatus
ENSSSCG00000037254	RNPC3	95	70.221	ENSGAGG00000008438	RNPC3	98	68.750	Gopherus_agassizii
ENSSSCG00000037254	RNPC3	99	73.114	ENSGGOG00000026201	-	99	75.000	Gorilla_gorilla
ENSSSCG00000037254	RNPC3	78	78.947	ENSHBUG00000015966	rnpc3	82	78.947	Haplochromis_burtoni
ENSSSCG00000037254	RNPC3	100	88.395	ENSHGLG00000001708	RNPC3	100	89.942	Heterocephalus_glaber_female
ENSSSCG00000037254	RNPC3	100	88.395	ENSHGLG00100003005	RNPC3	100	89.942	Heterocephalus_glaber_male
ENSSSCG00000037254	RNPC3	95	53.614	ENSHCOG00000017135	rnpc3	97	55.020	Hippocampus_comes
ENSSSCG00000037254	RNPC3	95	56.740	ENSIPUG00000002916	rnpc3	97	56.539	Ictalurus_punctatus
ENSSSCG00000037254	RNPC3	100	91.103	ENSSTOG00000025020	RNPC3	100	90.716	Ictidomys_tridecemlineatus
ENSSSCG00000037254	RNPC3	99	86.047	ENSJJAG00000010203	Rnpc3	100	88.178	Jaculus_jaculus
ENSSSCG00000037254	RNPC3	95	55.375	ENSKMAG00000017358	rnpc3	97	54.582	Kryptolebias_marmoratus
ENSSSCG00000037254	RNPC3	95	56.338	ENSLBEG00000024901	rnpc3	95	54.403	Labrus_bergylta
ENSSSCG00000037254	RNPC3	95	62.097	ENSLACG00000005720	RNPC3	90	62.450	Latimeria_chalumnae
ENSSSCG00000037254	RNPC3	95	59.631	ENSLOCG00000007986	rnpc3	96	60.451	Lepisosteus_oculatus
ENSSSCG00000037254	RNPC3	99	91.085	ENSLAFG00000032342	RNPC3	100	90.891	Loxodonta_africana
ENSSSCG00000037254	RNPC3	99	92.039	ENSMFAG00000002004	RNPC3	99	93.010	Macaca_fascicularis
ENSSSCG00000037254	RNPC3	98	68.713	ENSMFAG00000002917	-	99	68.056	Macaca_fascicularis
ENSSSCG00000037254	RNPC3	82	84.651	ENSMMUG00000002098	-	91	84.651	Macaca_mulatta
ENSSSCG00000037254	RNPC3	99	91.650	ENSMMUG00000018039	RNPC3	99	92.621	Macaca_mulatta
ENSSSCG00000037254	RNPC3	98	64.881	ENSMNEG00000029209	-	99	66.931	Macaca_nemestrina
ENSSSCG00000037254	RNPC3	99	86.408	ENSMNEG00000033950	RNPC3	99	86.602	Macaca_nemestrina
ENSSSCG00000037254	RNPC3	98	67.647	ENSMLEG00000034644	-	98	69.591	Mandrillus_leucophaeus
ENSSSCG00000037254	RNPC3	99	92.233	ENSMLEG00000033628	RNPC3	99	93.204	Mandrillus_leucophaeus
ENSSSCG00000037254	RNPC3	95	52.811	ENSMAMG00000007496	rnpc3	97	51.367	Mastacembelus_armatus
ENSSSCG00000037254	RNPC3	95	55.268	ENSMZEG00005020233	rnpc3	97	53.191	Maylandia_zebra
ENSSSCG00000037254	RNPC3	87	71.209	ENSMGAG00000006381	RNPC3	99	69.231	Meleagris_gallopavo
ENSSSCG00000037254	RNPC3	97	91.784	ENSMAUG00000001358	Rnpc3	100	90.097	Mesocricetus_auratus
ENSSSCG00000037254	RNPC3	99	90.698	ENSMICG00000029591	RNPC3	99	92.054	Microcebus_murinus
ENSSSCG00000037254	RNPC3	97	90.381	ENSMOCG00000013423	Rnpc3	100	88.201	Microtus_ochrogaster
ENSSSCG00000037254	RNPC3	95	51.927	ENSMMOG00000005309	rnpc3	97	52.104	Mola_mola
ENSSSCG00000037254	RNPC3	99	76.938	ENSMODG00000002946	RNPC3	99	77.713	Monodelphis_domestica
ENSSSCG00000037254	RNPC3	95	52.716	ENSMALG00000015471	rnpc3	97	53.119	Monopterus_albus
ENSSSCG00000037254	RNPC3	99	88.932	MGP_CAROLIEiJ_G0025555	Rnpc3	100	88.583	Mus_caroli
ENSSSCG00000037254	RNPC3	99	86.990	ENSMUSG00000027981	Rnpc3	100	87.184	Mus_musculus
ENSSSCG00000037254	RNPC3	99	86.408	MGP_PahariEiJ_G0027001	Rnpc3	100	86.811	Mus_pahari
ENSSSCG00000037254	RNPC3	99	88.738	MGP_SPRETEiJ_G0026505	Rnpc3	100	87.008	Mus_spretus
ENSSSCG00000037254	RNPC3	100	91.489	ENSMPUG00000007349	RNPC3	100	92.650	Mustela_putorius_furo
ENSSSCG00000037254	RNPC3	100	90.909	ENSMLUG00000028743	RNPC3	100	90.329	Myotis_lucifugus
ENSSSCG00000037254	RNPC3	99	87.354	ENSNGAG00000010939	Rnpc3	100	89.147	Nannospalax_galili
ENSSSCG00000037254	RNPC3	95	55.172	ENSNBRG00000012196	rnpc3	93	53.452	Neolamprologus_brichardi
ENSSSCG00000037254	RNPC3	100	91.667	ENSNLEG00000012013	RNPC3	100	92.636	Nomascus_leucogenys
ENSSSCG00000037254	RNPC3	100	87.984	ENSODEG00000007612	RNPC3	100	87.403	Octodon_degus
ENSSSCG00000037254	RNPC3	95	55.668	ENSONIG00000004770	rnpc3	99	54.331	Oreochromis_niloticus
ENSSSCG00000037254	RNPC3	90	77.468	ENSOANG00000008220	RNPC3	99	78.326	Ornithorhynchus_anatinus
ENSSSCG00000037254	RNPC3	100	91.683	ENSOCUG00000004016	RNPC3	100	91.103	Oryctolagus_cuniculus
ENSSSCG00000037254	RNPC3	95	53.831	ENSORLG00000005694	rnpc3	97	52.652	Oryzias_latipes
ENSSSCG00000037254	RNPC3	95	54.767	ENSORLG00020005513	rnpc3	97	53.137	Oryzias_latipes_hni
ENSSSCG00000037254	RNPC3	95	54.217	ENSORLG00015002179	rnpc3	97	52.838	Oryzias_latipes_hsok
ENSSSCG00000037254	RNPC3	95	53.427	ENSOMEG00000017737	rnpc3	97	55.936	Oryzias_melastigma
ENSSSCG00000037254	RNPC3	100	90.135	ENSOGAG00000026182	RNPC3	100	90.329	Otolemur_garnettii
ENSSSCG00000037254	RNPC3	100	92.843	ENSOARG00000018719	RNPC3	100	93.810	Ovis_aries
ENSSSCG00000037254	RNPC3	100	91.506	ENSPPAG00000037459	RNPC3	100	92.471	Pan_paniscus
ENSSSCG00000037254	RNPC3	100	74.081	ENSPPAG00000030278	-	100	76.015	Pan_paniscus
ENSSSCG00000037254	RNPC3	100	92.456	ENSPPRG00000020246	RNPC3	100	93.424	Panthera_pardus
ENSSSCG00000037254	RNPC3	98	92.702	ENSPTIG00000009887	RNPC3	100	93.688	Panthera_tigris_altaica
ENSSSCG00000037254	RNPC3	100	91.683	ENSPTRG00000033902	RNPC3	100	92.650	Pan_troglodytes
ENSSSCG00000037254	RNPC3	100	73.501	ENSPTRG00000044227	-	100	75.242	Pan_troglodytes
ENSSSCG00000037254	RNPC3	98	73.870	ENSPANG00000029957	-	100	72.978	Papio_anubis
ENSSSCG00000037254	RNPC3	99	92.218	ENSPANG00000012137	RNPC3	99	93.191	Papio_anubis
ENSSSCG00000037254	RNPC3	94	54.032	ENSPKIG00000008828	rnpc3	95	54.192	Paramormyrops_kingsleyae
ENSSSCG00000037254	RNPC3	63	68.675	ENSPSIG00000007396	RNPC3	99	66.265	Pelodiscus_sinensis
ENSSSCG00000037254	RNPC3	93	52.371	ENSPMGG00000011742	rnpc3	95	53.608	Periophthalmus_magnuspinnatus
ENSSSCG00000037254	RNPC3	88	90.789	ENSPEMG00000020112	Rnpc3	100	90.909	Peromyscus_maniculatus_bairdii
ENSSSCG00000037254	RNPC3	96	45.698	ENSPMAG00000003778	rnpc3	98	45.420	Petromyzon_marinus
ENSSSCG00000037254	RNPC3	99	78.295	ENSPCIG00000004415	-	99	78.488	Phascolarctos_cinereus
ENSSSCG00000037254	RNPC3	95	51.807	ENSPFOG00000009895	rnpc3	97	51.758	Poecilia_formosa
ENSSSCG00000037254	RNPC3	95	51.807	ENSPLAG00000012023	rnpc3	97	51.758	Poecilia_latipinna
ENSSSCG00000037254	RNPC3	95	52.008	ENSPMEG00000003663	rnpc3	97	51.953	Poecilia_mexicana
ENSSSCG00000037254	RNPC3	96	51.594	ENSPREG00000010206	rnpc3	99	51.044	Poecilia_reticulata
ENSSSCG00000037254	RNPC3	84	87.097	ENSPPYG00000001102	RNPC3	99	87.327	Pongo_abelii
ENSSSCG00000037254	RNPC3	95	55.172	ENSPNYG00000020603	rnpc3	96	53.452	Pundamilia_nyererei
ENSSSCG00000037254	RNPC3	95	53.678	ENSPNAG00000000524	rnpc3	89	53.968	Pygocentrus_nattereri
ENSSSCG00000037254	RNPC3	99	88.350	ENSRNOG00000017310	Rnpc3	100	87.767	Rattus_norvegicus
ENSSSCG00000037254	RNPC3	99	86.047	ENSRBIG00000043897	RNPC3	99	87.016	Rhinopithecus_bieti
ENSSSCG00000037254	RNPC3	99	91.845	ENSRROG00000032334	RNPC3	99	92.816	Rhinopithecus_roxellana
ENSSSCG00000037254	RNPC3	100	90.116	ENSSBOG00000024473	RNPC3	100	91.279	Saimiri_boliviensis_boliviensis
ENSSSCG00000037254	RNPC3	99	77.519	ENSSHAG00000011859	RNPC3	99	78.101	Sarcophilus_harrisii
ENSSSCG00000037254	RNPC3	96	60.400	ENSSFOG00015013055	rnpc3	99	60.400	Scleropages_formosus
ENSSSCG00000037254	RNPC3	95	52.800	ENSSMAG00000020346	rnpc3	97	51.267	Scophthalmus_maximus
ENSSSCG00000037254	RNPC3	95	55.800	ENSSDUG00000006600	rnpc3	96	54.086	Seriola_dumerili
ENSSSCG00000037254	RNPC3	95	54.600	ENSSLDG00000007979	rnpc3	96	53.891	Seriola_lalandi_dorsalis
ENSSSCG00000037254	RNPC3	95	70.994	ENSSPUG00000008539	-	94	70.588	Sphenodon_punctatus
ENSSSCG00000037254	RNPC3	96	65.000	ENSSPUG00000003872	-	93	65.400	Sphenodon_punctatus
ENSSSCG00000037254	RNPC3	95	56.237	ENSSPAG00000005633	rnpc3	97	57.055	Stegastes_partitus
ENSSSCG00000037254	RNPC3	87	71.082	ENSTGUG00000004795	-	99	69.316	Taeniopygia_guttata
ENSSSCG00000037254	RNPC3	95	55.289	ENSTNIG00000018963	rnpc3	97	55.689	Tetraodon_nigroviridis
ENSSSCG00000037254	RNPC3	98	93.110	ENSUMAG00000007775	RNPC3	100	94.291	Ursus_maritimus
ENSSSCG00000037254	RNPC3	100	92.085	ENSVVUG00000000331	RNPC3	100	93.436	Vulpes_vulpes
ENSSSCG00000037254	RNPC3	95	53.200	ENSXETG00000025027	rnpc3	97	52.400	Xenopus_tropicalis
ENSSSCG00000037254	RNPC3	96	52.456	ENSXCOG00000005013	rnpc3	97	52.165	Xiphophorus_couchianus
ENSSSCG00000037254	RNPC3	95	52.988	ENSXMAG00000006495	rnpc3	97	51.550	Xiphophorus_maculatus