EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSSSCG00000038304 (Gene tree)
Gene ID: 100144418
Gene Symbol: -
Alias: -
Full Name: RNA binding motif protein 4B
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 12794 bases
Position: chr2:5745379-5758172
Accession: 100144418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000013750	zf-CCHC	PF00098.23	2.9e-07	1	1
ENSSSCP00000043449	zf-CCHC	PF00098.23	2.9e-07	1	1
ENSSSCP00000045394	zf-CCHC	PF00098.23	2.9e-07	1	1
ENSSSCP00000013750	RRM_5	PF13893.6	3.1e-08	1	2
ENSSSCP00000013750	RRM_5	PF13893.6	3.1e-08	2	2
ENSSSCP00000043449	RRM_5	PF13893.6	3.1e-08	1	2
ENSSSCP00000043449	RRM_5	PF13893.6	3.1e-08	2	2
ENSSSCP00000045394	RRM_5	PF13893.6	3.1e-08	1	2
ENSSSCP00000045394	RRM_5	PF13893.6	3.1e-08	2	2
ENSSSCP00000013750	RRM_1	PF00076.22	1.2e-34	1	2
ENSSSCP00000013750	RRM_1	PF00076.22	1.2e-34	2	2
ENSSSCP00000043449	RRM_1	PF00076.22	1.2e-34	1	2
ENSSSCP00000043449	RRM_1	PF00076.22	1.2e-34	2	2
ENSSSCP00000045394	RRM_1	PF00076.22	1.2e-34	1	2
ENSSSCP00000045394	RRM_1	PF00076.22	1.2e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000014136	-	2101	-	ENSSSCP00000013750	359 (aa)	-	Q06AT9
ENSSSCT00000053522	-	2768	XM_021076830	ENSSSCP00000043449	359 (aa)	XP_020932489	Q06AT9
ENSSSCT00000053264	-	4373	-	ENSSSCP00000045394	359 (aa)	-	Q06AT9

Gene Model

Click here to download ENSSSCG00000038304's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038304's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000038304	-	100	87.671	ENSSSCG00000032437	RBM4	100	88.219

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000038304	-	100	74.380	ENSACAG00000007777	-	100	74.380	Anolis_carolinensis
ENSSSCG00000038304	-	100	73.259	ENSCCAG00000029710	-	96	81.022	Cebus_capucinus
ENSSSCG00000038304	-	60	82.710	ENSCANG00000043380	-	100	82.710	Colobus_angolensis_palliatus
ENSSSCG00000038304	-	100	74.930	ENSGGOG00000025398	-	98	77.857	Gorilla_gorilla
ENSSSCG00000038304	-	54	94.203	ENSHGLG00000007708	-	95	94.203	Heterocephalus_glaber_female
ENSSSCG00000038304	-	100	67.131	ENSHGLG00000007536	-	100	65.460	Heterocephalus_glaber_female
ENSSSCG00000038304	-	54	94.203	ENSHGLG00100011999	-	95	94.203	Heterocephalus_glaber_male
ENSSSCG00000038304	-	100	68.245	ENSHGLG00100011767	-	100	66.574	Heterocephalus_glaber_male
ENSSSCG00000038304	-	64	50.644	ENSLACG00000009547	-	89	51.709	Latimeria_chalumnae
ENSSSCG00000038304	-	60	84.332	ENSMFAG00000041731	-	93	84.332	Macaca_fascicularis
ENSSSCG00000038304	-	96	73.913	ENSMMUG00000003366	-	100	69.164	Macaca_mulatta
ENSSSCG00000038304	-	60	84.332	ENSMNEG00000036946	-	93	84.332	Macaca_nemestrina
ENSSSCG00000038304	-	60	82.949	ENSMLEG00000038589	-	93	82.949	Mandrillus_leucophaeus
ENSSSCG00000038304	-	100	69.916	ENSNLEG00000027654	-	100	69.359	Nomascus_leucogenys
ENSSSCG00000038304	-	99	73.392	ENSPPAG00000040796	-	100	71.637	Pan_paniscus
ENSSSCG00000038304	-	99	72.807	ENSPTRG00000046155	-	100	71.053	Pan_troglodytes
ENSSSCG00000038304	-	60	82.949	ENSPANG00000018676	-	93	82.949	Papio_anubis
ENSSSCG00000038304	-	100	92.521	ENSPCAG00000003414	-	100	92.798	Procavia_capensis
ENSSSCG00000038304	-	95	68.529	ENSRBIG00000035855	-	100	78.824	Rhinopithecus_bieti
ENSSSCG00000038304	-	99	69.774	ENSRROG00000038956	-	100	78.824	Rhinopithecus_roxellana
ENSSSCG00000038304	-	98	88.256	ENSSHAG00000008133	-	99	88.612	Sarcophilus_harrisii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005730	nucleolus	-	IEA	Component
GO:0006417	regulation of translation	-	ISS	Process
GO:0007623	circadian rhythm	-	ISS	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0032922	circadian regulation of gene expression	-	ISS	Process
GO:0043153	entrainment of circadian clock by photoperiod	-	ISS	Process