EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000038505 (Gene tree)
Gene ID
100737226
Gene Symbol
MSI2
Alias
-
Full Name
musashi RNA binding protein 2
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Plus strand
Length
439230 bases
Position
chr12:33536327-33975556
Accession
100737226
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000030486RRM_1PF00076.224.7e-3412
ENSSSCP00000030486RRM_1PF00076.224.7e-3422
ENSSSCP00000051417RRM_1PF00076.224.9e-3412
ENSSSCP00000051417RRM_1PF00076.224.9e-3422
ENSSSCP00000032270RRM_1PF00076.225.5e-3412
ENSSSCP00000032270RRM_1PF00076.225.5e-3422
ENSSSCP00000041954RRM_1PF00076.225.5e-3412
ENSSSCP00000041954RRM_1PF00076.225.5e-3422
ENSSSCP00000043030RRM_1PF00076.225.5e-3412
ENSSSCP00000043030RRM_1PF00076.225.5e-3422
ENSSSCP00000047153RRM_1PF00076.226.2e-3412
ENSSSCP00000047153RRM_1PF00076.226.2e-3422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000044888MSI2-2032016XM_021066174ENSSSCP00000051417315 (aa)XP_020921833A0A287B4R1
ENSSSCT00000061073MSI2-2022044XM_021066167ENSSSCP00000047153354 (aa)XP_020921826A0A287ATA8
ENSSSCT00000037980MSI2-2063564-ENSSSCP00000043030342 (aa)-A0A287AG72
ENSSSCT00000059213MSI2-2056284XM_021066168ENSSSCP00000032270328 (aa)XP_020921827A0A286ZLC8
ENSSSCT00000036438MSI2-2011872XM_021066177ENSSSCP00000030486307 (aa)XP_020921836K7GRF9
ENSSSCT00000064756MSI2-2042135XM_021066169ENSSSCP00000041954328 (aa)XP_020921828I7H541
Gene Model
Click here to download ENSSSCG00000038505's gene model file
Pathways
Pathway IDPathway NameSource
ssc03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038505's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000038505MSI29132.099ENSSSCG00000023409TIA19232.099
ENSSSCG00000038505MSI25741.279ENSSSCG00000013607-8036.765
ENSSSCG00000038505MSI26141.711ENSSSCG00000001932-7141.711
ENSSSCG00000038505MSI29774.695ENSSSCG00000029365MSI19673.636
ENSSSCG00000038505MSI25139.344ENSSSCG00000010685-5935.616
ENSSSCG00000038505MSI25937.569ENSSSCG00000012503-5336.757
ENSSSCG00000038505MSI26049.189ENSSSCG00000037245-6840.203
ENSSSCG00000038505MSI28633.106ENSSSCG00000012473-6239.894
ENSSSCG00000038505MSI25743.407ENSSSCG00000015988HNRNPA38135.350
ENSSSCG00000038505MSI25941.279ENSSSCG00000036350HNRNPA2B18540.230
ENSSSCG00000038505MSI25434.568ENSSSCG00000007309RBM395434.568
ENSSSCG00000038505MSI25937.158ENSSSCG00000040926-6636.073
ENSSSCG00000038505MSI25741.579ENSSSCG00000022528DAZAP15041.579
ENSSSCG00000038505MSI25033.750ENSSSCG00000038749-5333.742
ENSSSCG00000038505MSI25543.023ENSSSCG00000000288HNRNPA18037.171
ENSSSCG00000038505MSI25937.158ENSSSCG00000033635-6636.364
ENSSSCG00000038505MSI28732.877ENSSSCG00000023126-5732.877
ENSSSCG00000038505MSI25845.161ENSSSCG00000040799-8945.161
ENSSSCG00000038505MSI26246.701ENSSSCG00000009249HNRNPD7441.270
ENSSSCG00000038505MSI25044.595ENSSSCG00000013427CIRBP9544.595
ENSSSCG00000038505MSI26149.198ENSSSCG00000014031-6748.039
ENSSSCG00000038505MSI25541.892ENSSSCG00000005430-8141.892
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000038505MSI2100100.000ENSG00000153944MSI2100100.000Homo_sapiens
ENSSSCG00000038505MSI210093.416ENSAPOG00000001658msi2a9692.177Acanthochromis_polyacanthus
ENSSSCG00000038505MSI297100.000ENSAMEG00000002697MSI2100100.000Ailuropoda_melanoleuca
ENSSSCG00000038505MSI29588.000ENSACIG00000009475msi2a9975.000Amphilophus_citrinellus
ENSSSCG00000038505MSI26276.667ENSAOCG00000014822msi2a6976.667Amphiprion_ocellaris
ENSSSCG00000038505MSI210088.110ENSAPEG00000007706msi2a10088.110Amphiprion_percula
ENSSSCG00000038505MSI210093.416ENSATEG00000010498msi2a9692.177Anabas_testudineus
ENSSSCG00000038505MSI29493.165ENSATEG00000003301-10093.165Anabas_testudineus
ENSSSCG00000038505MSI29097.826ENSACAG00000005452MSI27495.455Anolis_carolinensis
ENSSSCG00000038505MSI2100100.000ENSANAG00000037827MSI2100100.000Aotus_nancymaae
ENSSSCG00000038505MSI29792.829ENSACLG00000007752msi2a9691.837Astatotilapia_calliptera
ENSSSCG00000038505MSI210096.708ENSAMXG00000010474msi2b9596.091Astyanax_mexicanus
ENSSSCG00000038505MSI210095.062ENSAMXG00000032796msi2a10091.793Astyanax_mexicanus
ENSSSCG00000038505MSI210094.444ENSBTAG00000004406MSI29799.674Bos_taurus
ENSSSCG00000038505MSI28159.004WBGene00003423msi-17959.004Caenorhabditis_elegans
ENSSSCG00000038505MSI2100100.000ENSCJAG00000013998MSI2100100.000Callithrix_jacchus
ENSSSCG00000038505MSI29798.746ENSCAFG00020025620MSI28198.746Canis_lupus_dingo
ENSSSCG00000038505MSI210098.476ENSCHIG00000016580MSI210098.476Capra_hircus
ENSSSCG00000038505MSI29495.390ENSCPOG00000034042MSI29995.390Cavia_porcellus
ENSSSCG00000038505MSI2100100.000ENSCCAG00000033927MSI2100100.000Cebus_capucinus
ENSSSCG00000038505MSI210098.780ENSCATG00000040879MSI210098.780Cercocebus_atys
ENSSSCG00000038505MSI210097.458ENSCLAG00000014325MSI210097.458Chinchilla_lanigera
ENSSSCG00000038505MSI2100100.000ENSCSAG00000005633MSI2100100.000Chlorocebus_sabaeus
ENSSSCG00000038505MSI280100.000ENSCHOG00000008660MSI283100.000Choloepus_hoffmanni
ENSSSCG00000038505MSI29698.077ENSCPBG00000009942MSI29693.688Chrysemys_picta_bellii
ENSSSCG00000038505MSI28754.634ENSCING00000018579-9753.125Ciona_intestinalis
ENSSSCG00000038505MSI27066.667ENSCSAVG00000010397-7662.857Ciona_savignyi
ENSSSCG00000038505MSI297100.000ENSCANG00000036414MSI2100100.000Colobus_angolensis_palliatus
ENSSSCG00000038505MSI210099.392ENSCGRG00001013330Msi210099.392Cricetulus_griseus_chok1gshd
ENSSSCG00000038505MSI29799.699ENSCGRG00000003141Msi210099.699Cricetulus_griseus_crigri
ENSSSCG00000038505MSI27875.258ENSCSEG00000013557msi2a8373.711Cynoglossus_semilaevis
ENSSSCG00000038505MSI210079.878ENSCSEG00000003266-10079.878Cynoglossus_semilaevis
ENSSSCG00000038505MSI26173.913ENSCSEG00000013549msi2a10073.913Cynoglossus_semilaevis
ENSSSCG00000038505MSI29691.837ENSCVAG00000017075msi2a9691.837Cyprinodon_variegatus
ENSSSCG00000038505MSI29693.004ENSDARG00000033901msi2a10077.320Danio_rerio
ENSSSCG00000038505MSI29695.885ENSDARG00000032614msi2b10098.020Danio_rerio
ENSSSCG00000038505MSI294100.000ENSDNOG00000014501MSI2100100.000Dasypus_novemcinctus
ENSSSCG00000038505MSI255100.000ENSDORG00000028440-100100.000Dipodomys_ordii
ENSSSCG00000038505MSI27888.832ENSDORG00000005394Msi28487.817Dipodomys_ordii
ENSSSCG00000038505MSI29759.654FBgn0260943Rbp69067.347Drosophila_melanogaster
ENSSSCG00000038505MSI27276.316ENSETEG00000012450-6476.316Echinops_telfairi
ENSSSCG00000038505MSI29068.810ENSEBUG00000006732msi2a8768.489Eptatretus_burgeri
ENSSSCG00000038505MSI2100100.000ENSEASG00005002965MSI210089.646Equus_asinus_asinus
ENSSSCG00000038505MSI2100100.000ENSECAG00000011435MSI2100100.000Equus_caballus
ENSSSCG00000038505MSI28285.375ENSEEUG00000007810MSI210085.375Erinaceus_europaeus
ENSSSCG00000038505MSI210094.262ENSELUG00000001361msi2b9392.332Esox_lucius
ENSSSCG00000038505MSI210089.329ENSELUG00000011747msi2a10089.329Esox_lucius
ENSSSCG00000038505MSI2100100.000ENSFCAG00000041686MSI2100100.000Felis_catus
ENSSSCG00000038505MSI26180.128ENSFCAG00000033787-8280.128Felis_catus
ENSSSCG00000038505MSI297100.000ENSFDAG00000016118MSI2100100.000Fukomys_damarensis
ENSSSCG00000038505MSI210093.416ENSFHEG00000000084msi2a9693.421Fundulus_heteroclitus
ENSSSCG00000038505MSI25993.269ENSGMOG00000007596-10093.269Gadus_morhua
ENSSSCG00000038505MSI29798.462ENSGALG00000005567MSI210094.068Gallus_gallus
ENSSSCG00000038505MSI29680.251ENSGAFG00000006974msi2a9094.040Gambusia_affinis
ENSSSCG00000038505MSI29698.077ENSGAGG00000016542MSI210099.013Gopherus_agassizii
ENSSSCG00000038505MSI297100.000ENSGGOG00000013182MSI2100100.000Gorilla_gorilla
ENSSSCG00000038505MSI210093.004ENSHBUG00000020800msi2a9691.837Haplochromis_burtoni
ENSSSCG00000038505MSI210088.701ENSHGLG00000012444MSI210088.701Heterocephalus_glaber_female
ENSSSCG00000038505MSI255100.000ENSHGLG00100004028-87100.000Heterocephalus_glaber_male
ENSSSCG00000038505MSI277100.000ENSHGLG00100003744MSI2100100.000Heterocephalus_glaber_male
ENSSSCG00000038505MSI29681.893ENSHCOG00000017241-7187.678Hippocampus_comes
ENSSSCG00000038505MSI29792.829ENSHCOG00000000266msi2a9784.911Hippocampus_comes
ENSSSCG00000038505MSI29693.827ENSIPUG00000021097msi2a9692.857Ictalurus_punctatus
ENSSSCG00000038505MSI210095.885ENSIPUG00000003732msi2b9294.603Ictalurus_punctatus
ENSSSCG00000038505MSI29495.390ENSSTOG00000007884MSI29995.390Ictidomys_tridecemlineatus
ENSSSCG00000038505MSI27788.889ENSJJAG00000006292-10088.406Jaculus_jaculus
ENSSSCG00000038505MSI255100.000ENSJJAG00000009467-100100.000Jaculus_jaculus
ENSSSCG00000038505MSI210093.004ENSKMAG00000009494msi2a10090.854Kryptolebias_marmoratus
ENSSSCG00000038505MSI210093.416ENSLBEG00000007061msi2a10088.110Labrus_bergylta
ENSSSCG00000038505MSI28986.010ENSLBEG00000026223-10068.915Labrus_bergylta
ENSSSCG00000038505MSI25497.030ENSLACG00000016798MSI210097.030Latimeria_chalumnae
ENSSSCG00000038505MSI29695.885ENSLOCG00000004675msi2b10084.553Lepisosteus_oculatus
ENSSSCG00000038505MSI297100.000ENSMFAG00000003775MSI2100100.000Macaca_fascicularis
ENSSSCG00000038505MSI297100.000ENSMMUG00000002069MSI2100100.000Macaca_mulatta
ENSSSCG00000038505MSI2100100.000ENSMNEG00000045275MSI2100100.000Macaca_nemestrina
ENSSSCG00000038505MSI297100.000ENSMLEG00000033888MSI2100100.000Mandrillus_leucophaeus
ENSSSCG00000038505MSI29893.004ENSMAMG00000002488-9992.715Mastacembelus_armatus
ENSSSCG00000038505MSI210093.416ENSMAMG00000010503msi2a9692.177Mastacembelus_armatus
ENSSSCG00000038505MSI210093.004ENSMZEG00005007676msi2a10092.378Maylandia_zebra
ENSSSCG00000038505MSI210096.901ENSMAUG00000003862Msi210096.901Mesocricetus_auratus
ENSSSCG00000038505MSI210078.679ENSMICG00000032913-10079.580Microcebus_murinus
ENSSSCG00000038505MSI2100100.000ENSMICG00000013598-100100.000Microcebus_murinus
ENSSSCG00000038505MSI210097.175ENSMOCG00000005820Msi210097.175Microtus_ochrogaster
ENSSSCG00000038505MSI29587.243ENSMMOG00000008348msi2a9582.319Mola_mola
ENSSSCG00000038505MSI27798.551ENSMODG00000014790MSI210098.551Monodelphis_domestica
ENSSSCG00000038505MSI210093.464ENSMALG00000000071msi2a10093.464Monopterus_albus
ENSSSCG00000038505MSI210099.695MGP_CAROLIEiJ_G0016948Msi2100100.000Mus_caroli
ENSSSCG00000038505MSI210099.695ENSMUSG00000069769Msi2100100.000Mus_musculus
ENSSSCG00000038505MSI210099.695MGP_PahariEiJ_G0018079Msi2100100.000Mus_pahari
ENSSSCG00000038505MSI210099.695MGP_SPRETEiJ_G0017795Msi2100100.000Mus_spretus
ENSSSCG00000038505MSI210094.737ENSMPUG00000015377MSI297100.000Mustela_putorius_furo
ENSSSCG00000038505MSI210094.152ENSMLUG00000007865MSI29799.674Myotis_lucifugus
ENSSSCG00000038505MSI210097.175ENSNGAG00000017807Msi210097.175Nannospalax_galili
ENSSSCG00000038505MSI210087.805ENSNBRG00000014596msi2a10087.805Neolamprologus_brichardi
ENSSSCG00000038505MSI297100.000ENSNLEG00000008059MSI2100100.000Nomascus_leucogenys
ENSSSCG00000038505MSI27288.816ENSOPRG00000000872-6488.816Ochotona_princeps
ENSSSCG00000038505MSI210097.458ENSODEG00000011974MSI210097.458Octodon_degus
ENSSSCG00000038505MSI26294.040ENSONIG00000001972msi2a8494.040Oreochromis_niloticus
ENSSSCG00000038505MSI29298.678ENSOANG00000005667MSI27598.678Ornithorhynchus_anatinus
ENSSSCG00000038505MSI210094.444ENSOCUG00000010440MSI297100.000Oryctolagus_cuniculus
ENSSSCG00000038505MSI210093.416ENSORLG00000009671msi2a10091.489Oryzias_latipes
ENSSSCG00000038505MSI210093.416ENSORLG00020021556msi2a9692.177Oryzias_latipes_hni
ENSSSCG00000038505MSI210093.416ENSORLG00015004592msi2a10091.489Oryzias_latipes_hsok
ENSSSCG00000038505MSI29692.177ENSOMEG00000000146msi2a9891.694Oryzias_melastigma
ENSSSCG00000038505MSI29495.440ENSOGAG00000005621MSI29995.440Otolemur_garnettii
ENSSSCG00000038505MSI297100.000ENSPPAG00000037697MSI2100100.000Pan_paniscus
ENSSSCG00000038505MSI294100.000ENSPPRG00000001848MSI29699.167Panthera_pardus
ENSSSCG00000038505MSI297100.000ENSPTIG00000021678MSI296100.000Panthera_tigris_altaica
ENSSSCG00000038505MSI27978.279ENSPTIG00000021873-9378.689Panthera_tigris_altaica
ENSSSCG00000038505MSI297100.000ENSPTRG00000009437MSI2100100.000Pan_troglodytes
ENSSSCG00000038505MSI2100100.000ENSPANG00000022319MSI2100100.000Papio_anubis
ENSSSCG00000038505MSI29690.816ENSPKIG00000007038-9686.061Paramormyrops_kingsleyae
ENSSSCG00000038505MSI25292.308ENSPKIG00000017107-8192.308Paramormyrops_kingsleyae
ENSSSCG00000038505MSI210098.106ENSPSIG00000008618MSI28398.106Pelodiscus_sinensis
ENSSSCG00000038505MSI210087.500ENSPMGG00000005888msi2a10087.500Periophthalmus_magnuspinnatus
ENSSSCG00000038505MSI255100.000ENSPEMG00000021793-100100.000Peromyscus_maniculatus_bairdii
ENSSSCG00000038505MSI210098.023ENSPCIG00000006063MSI210098.023Phascolarctos_cinereus
ENSSSCG00000038505MSI26191.429ENSPFOG00000019337MSI29291.429Poecilia_formosa
ENSSSCG00000038505MSI26290.210ENSPLAG00000000436msi2a7690.845Poecilia_latipinna
ENSSSCG00000038505MSI26279.720ENSPMEG00000013247msi2a8079.720Poecilia_mexicana
ENSSSCG00000038505MSI29793.227ENSPREG00000000881msi2a9985.671Poecilia_reticulata
ENSSSCG00000038505MSI29496.639ENSPPYG00000008244-10096.639Pongo_abelii
ENSSSCG00000038505MSI27370.588ENSPCAG00000010552MSI210070.588Procavia_capensis
ENSSSCG00000038505MSI25599.237ENSPCOG00000019195-100100.000Propithecus_coquereli
ENSSSCG00000038505MSI29490.785ENSPVAG00000017053MSI210090.785Pteropus_vampyrus
ENSSSCG00000038505MSI210092.378ENSPNYG00000018393msi2a10092.378Pundamilia_nyererei
ENSSSCG00000038505MSI210093.617ENSPNAG00000014957msi2a10092.097Pygocentrus_nattereri
ENSSSCG00000038505MSI29696.708ENSPNAG00000000844msi2b10088.754Pygocentrus_nattereri
ENSSSCG00000038505MSI294100.000ENSRNOG00000025338Msi2100100.000Rattus_norvegicus
ENSSSCG00000038505MSI25182.418ENSRBIG00000032064-7298.182Rhinopithecus_bieti
ENSSSCG00000038505MSI25599.130ENSRROG00000034421-100100.000Rhinopithecus_roxellana
ENSSSCG00000038505MSI297100.000ENSSBOG00000026425MSI2100100.000Saimiri_boliviensis_boliviensis
ENSSSCG00000038505MSI29798.765ENSSHAG00000008672MSI210098.765Sarcophilus_harrisii
ENSSSCG00000038505MSI29682.449ENSSFOG00015012168msi2b7487.204Scleropages_formosus
ENSSSCG00000038505MSI29489.577ENSSFOG00015021687-9787.948Scleropages_formosus
ENSSSCG00000038505MSI210093.416ENSSMAG00000018484msi2a9692.177Scophthalmus_maximus
ENSSSCG00000038505MSI29793.227ENSSDUG00000014507msi2a9692.177Seriola_dumerili
ENSSSCG00000038505MSI210083.728ENSSDUG00000021968-9992.053Seriola_dumerili
ENSSSCG00000038505MSI210093.416ENSSLDG00000017172msi2a10091.558Seriola_lalandi_dorsalis
ENSSSCG00000038505MSI26294.304ENSSPUG00000000913-9494.304Sphenodon_punctatus
ENSSSCG00000038505MSI210093.416ENSSPAG00000017793msi2a10091.857Stegastes_partitus
ENSSSCG00000038505MSI27799.034ENSTGUG00000008452MSI210099.034Taeniopygia_guttata
ENSSSCG00000038505MSI29593.416ENSTRUG00000021248msi2a10086.866Takifugu_rubripes
ENSSSCG00000038505MSI27982.645ENSTBEG00000001241MSI27382.645Tupaia_belangeri
ENSSSCG00000038505MSI29490.756ENSTTRG00000002189MSI210090.756Tursiops_truncatus
ENSSSCG00000038505MSI210094.737ENSUAMG00000000700MSI297100.000Ursus_americanus
ENSSSCG00000038505MSI293100.000ENSUMAG00000000505MSI2100100.000Ursus_maritimus
ENSSSCG00000038505MSI25984.615ENSVPAG00000006837-6284.615Vicugna_pacos
ENSSSCG00000038505MSI210098.671ENSVVUG00000011783MSI210098.671Vulpes_vulpes
ENSSSCG00000038505MSI29591.736ENSXCOG00000006113msi2a8987.500Xiphophorus_couchianus
ENSSSCG00000038505MSI29793.227ENSXMAG00000000608msi2a9691.837Xiphophorus_maculatus

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