EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSSSCG00000038507 (Gene tree)
Gene ID: 414391
Gene Symbol: -
Alias: -
Full Name: Sus scrofa ribosomal protein S29 (RPS29)%2C mRNA.
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 1874 bases
Position: chr1:179454934-179456807
Accession: NM_001001633
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000005381	Ribosomal_S14	PF00253.21	6e-15	1	1
ENSSSCP00000046039	Ribosomal_S14	PF00253.21	3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000005518	-	308	XM_021101317	ENSSSCP00000005381	56 (aa)	XP_020956976	F2Z5R7
ENSSSCT00000054553	-	1616	XM_021101312	ENSSSCP00000046039	86 (aa)	XP_020956971	A0A287AQ67

Gene Model

Click here to download ENSSSCG00000038507's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038507's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000038507	-	100	83.929	ENSSSCG00000037150	-	100	83.929
ENSSSCG00000038507	-	100	87.500	ENSSSCG00000035779	-	100	87.500
ENSSSCG00000038507	-	100	78.571	ENSSSCG00000001855	-	100	78.571
ENSSSCG00000038507	-	88	71.429	ENSSSCG00000039388	-	88	71.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000038507	-	100	92.857	ENSACIG00000003518	rps29	73	96.364	Amphilophus_citrinellus
ENSSSCG00000038507	-	98	100.000	ENSANAG00000024423	-	100	100.000	Aotus_nancymaae
ENSSSCG00000038507	-	89	68.000	ENSACLG00000000915	rps29	58	71.429	Astatotilapia_calliptera
ENSSSCG00000038507	-	100	100.000	ENSBTAG00000052337	RPS29	100	100.000	Bos_taurus
ENSSSCG00000038507	-	100	100.000	ENSCJAG00000039096	-	100	100.000	Callithrix_jacchus
ENSSSCG00000038507	-	100	91.071	ENSCJAG00000031814	-	100	91.071	Callithrix_jacchus
ENSSSCG00000038507	-	100	83.929	ENSCAFG00020002956	-	100	83.929	Canis_lupus_dingo
ENSSSCG00000038507	-	100	92.857	ENSCAFG00020003021	-	100	92.857	Canis_lupus_dingo
ENSSSCG00000038507	-	98	78.182	ENSCAFG00020021989	-	79	60.714	Canis_lupus_dingo
ENSSSCG00000038507	-	100	94.643	ENSCHIG00000010682	-	100	94.643	Capra_hircus
ENSSSCG00000038507	-	100	76.786	ENSTSYG00000012410	-	100	76.786	Carlito_syrichta
ENSSSCG00000038507	-	100	100.000	ENSTSYG00000030415	-	100	100.000	Carlito_syrichta
ENSSSCG00000038507	-	100	100.000	ENSCPOG00000032637	-	100	100.000	Cavia_porcellus
ENSSSCG00000038507	-	100	98.214	ENSCCAG00000019847	-	100	98.214	Cebus_capucinus
ENSSSCG00000038507	-	100	100.000	ENSCCAG00000032090	-	100	100.000	Cebus_capucinus
ENSSSCG00000038507	-	100	98.214	ENSCCAG00000020608	-	100	98.214	Cebus_capucinus
ENSSSCG00000038507	-	100	100.000	ENSCCAG00000019033	-	100	100.000	Cebus_capucinus
ENSSSCG00000038507	-	100	98.214	ENSCCAG00000032225	-	100	98.214	Cebus_capucinus
ENSSSCG00000038507	-	100	100.000	ENSCCAG00000001210	-	100	100.000	Cebus_capucinus
ENSSSCG00000038507	-	100	71.429	ENSCATG00000041319	-	100	71.429	Cercocebus_atys
ENSSSCG00000038507	-	100	100.000	ENSCATG00000017816	-	100	100.000	Cercocebus_atys
ENSSSCG00000038507	-	100	100.000	ENSCATG00000011469	-	100	100.000	Cercocebus_atys
ENSSSCG00000038507	-	100	100.000	ENSCSAG00000015276	-	100	100.000	Chlorocebus_sabaeus
ENSSSCG00000038507	-	91	76.471	ENSCHOG00000011358	-	93	76.471	Choloepus_hoffmanni
ENSSSCG00000038507	-	98	76.364	ENSCPBG00000015078	-	86	71.831	Chrysemys_picta_bellii
ENSSSCG00000038507	-	100	100.000	ENSCPBG00000018320	-	100	100.000	Chrysemys_picta_bellii
ENSSSCG00000038507	-	100	91.071	ENSCPBG00000019385	-	100	91.071	Chrysemys_picta_bellii
ENSSSCG00000038507	-	100	100.000	ENSCANG00000019407	-	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000038507	-	100	98.214	ENSCANG00000010019	-	100	98.214	Colobus_angolensis_palliatus
ENSSSCG00000038507	-	100	100.000	ENSCANG00000037526	-	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000038507	-	100	98.214	ENSCGRG00001001537	-	92	98.214	Cricetulus_griseus_chok1gshd
ENSSSCG00000038507	-	100	82.143	ENSCGRG00001000990	-	66	82.143	Cricetulus_griseus_chok1gshd
ENSSSCG00000038507	-	100	89.286	ENSCGRG00001010167	-	100	89.286	Cricetulus_griseus_chok1gshd
ENSSSCG00000038507	-	100	100.000	ENSCGRG00001020113	Rps29	100	100.000	Cricetulus_griseus_chok1gshd
ENSSSCG00000038507	-	100	87.500	ENSCGRG00001005461	-	100	87.500	Cricetulus_griseus_chok1gshd
ENSSSCG00000038507	-	100	98.214	ENSCGRG00000018591	-	92	98.214	Cricetulus_griseus_crigri
ENSSSCG00000038507	-	100	87.500	ENSCGRG00000019460	-	100	87.500	Cricetulus_griseus_crigri
ENSSSCG00000038507	-	100	73.214	ENSCGRG00000009208	-	100	73.214	Cricetulus_griseus_crigri
ENSSSCG00000038507	-	100	82.143	ENSCGRG00000019197	-	66	82.143	Cricetulus_griseus_crigri
ENSSSCG00000038507	-	100	89.286	ENSCGRG00000019055	-	100	89.286	Cricetulus_griseus_crigri
ENSSSCG00000038507	-	98	96.364	ENSCSEG00000001818	rps29	63	96.491	Cynoglossus_semilaevis
ENSSSCG00000038507	-	100	96.429	ENSDARG00000041232	rps29	100	96.429	Danio_rerio
ENSSSCG00000038507	-	100	85.000	ENSDORG00000013874	-	100	85.000	Dipodomys_ordii
ENSSSCG00000038507	-	100	96.429	ENSDORG00000028731	-	100	96.429	Dipodomys_ordii
ENSSSCG00000038507	-	100	91.071	ENSDORG00000026532	-	100	91.071	Dipodomys_ordii
ENSSSCG00000038507	-	100	83.929	ENSEBUG00000011966	rps29	70	81.667	Eptatretus_burgeri
ENSSSCG00000038507	-	98	67.273	ENSEASG00005020582	-	95	67.273	Equus_asinus_asinus
ENSSSCG00000038507	-	98	96.364	ENSEASG00005007821	-	92	77.215	Equus_asinus_asinus
ENSSSCG00000038507	-	98	96.364	ENSECAG00000011782	RPS29	92	77.215	Equus_caballus
ENSSSCG00000038507	-	100	80.357	ENSFCAG00000024162	-	100	80.357	Felis_catus
ENSSSCG00000038507	-	100	100.000	ENSFALG00000001808	-	92	100.000	Ficedula_albicollis
ENSSSCG00000038507	-	100	100.000	ENSFALG00000001738	-	92	100.000	Ficedula_albicollis
ENSSSCG00000038507	-	100	98.214	ENSGACG00000012858	rps29	100	98.214	Gasterosteus_aculeatus
ENSSSCG00000038507	-	84	95.745	ENSGAGG00000025088	-	57	95.745	Gopherus_agassizii
ENSSSCG00000038507	-	98	85.455	ENSGAGG00000016743	-	92	85.455	Gopherus_agassizii
ENSSSCG00000038507	-	100	100.000	ENSGGOG00000042996	-	100	100.000	Gorilla_gorilla
ENSSSCG00000038507	-	100	96.429	ENSGGOG00000042896	-	100	96.429	Gorilla_gorilla
ENSSSCG00000038507	-	100	96.429	ENSHBUG00000018115	rps29	100	96.429	Haplochromis_burtoni
ENSSSCG00000038507	-	100	80.357	ENSJJAG00000011627	-	100	80.357	Jaculus_jaculus
ENSSSCG00000038507	-	100	100.000	ENSLAFG00000031145	-	100	100.000	Loxodonta_africana
ENSSSCG00000038507	-	100	100.000	ENSMFAG00000026635	-	100	100.000	Macaca_fascicularis
ENSSSCG00000038507	-	100	100.000	ENSMMUG00000008939	-	100	100.000	Macaca_mulatta
ENSSSCG00000038507	-	100	100.000	ENSMMUG00000043502	-	100	100.000	Macaca_mulatta
ENSSSCG00000038507	-	100	87.500	ENSMMUG00000043202	-	100	87.500	Macaca_mulatta
ENSSSCG00000038507	-	100	92.857	ENSMMUG00000032153	-	100	92.857	Macaca_mulatta
ENSSSCG00000038507	-	100	98.214	ENSMMUG00000040278	-	100	98.214	Macaca_mulatta
ENSSSCG00000038507	-	100	100.000	ENSMNEG00000027952	-	100	100.000	Macaca_nemestrina
ENSSSCG00000038507	-	100	100.000	ENSMNEG00000037893	-	100	100.000	Macaca_nemestrina
ENSSSCG00000038507	-	100	98.214	ENSMLEG00000026733	-	100	98.214	Mandrillus_leucophaeus
ENSSSCG00000038507	-	100	96.429	ENSMZEG00005012261	rps29	100	96.429	Maylandia_zebra
ENSSSCG00000038507	-	100	100.000	ENSMGAG00000013705	-	100	100.000	Meleagris_gallopavo
ENSSSCG00000038507	-	100	89.286	ENSMAUG00000005362	-	100	89.286	Mesocricetus_auratus
ENSSSCG00000038507	-	63	100.000	ENSMAUG00000000899	-	100	100.000	Mesocricetus_auratus
ENSSSCG00000038507	-	98	87.273	ENSMAUG00000019410	-	100	87.273	Mesocricetus_auratus
ENSSSCG00000038507	-	100	100.000	ENSMICG00000045654	-	100	100.000	Microcebus_murinus
ENSSSCG00000038507	-	100	96.429	ENSMICG00000041582	-	100	96.429	Microcebus_murinus
ENSSSCG00000038507	-	100	100.000	ENSMOCG00000017681	Rps29	100	100.000	Microtus_ochrogaster
ENSSSCG00000038507	-	96	100.000	ENSMMOG00000005119	rps29	51	100.000	Mola_mola
ENSSSCG00000038507	-	100	89.286	ENSMODG00000025305	-	100	89.286	Monodelphis_domestica
ENSSSCG00000038507	-	100	100.000	MGP_CAROLIEiJ_G0017795	-	100	100.000	Mus_caroli
ENSSSCG00000038507	-	100	100.000	ENSMUSG00000034892	Rps29	100	100.000	Mus_musculus
ENSSSCG00000038507	-	100	100.000	MGP_PahariEiJ_G0029551	-	100	100.000	Mus_pahari
ENSSSCG00000038507	-	100	91.071	MGP_SPRETEiJ_G0019597	-	92	91.071	Mus_spretus
ENSSSCG00000038507	-	100	100.000	MGP_SPRETEiJ_G0018641	Rps29	100	100.000	Mus_spretus
ENSSSCG00000038507	-	98	100.000	ENSMLUG00000025007	-	100	100.000	Myotis_lucifugus
ENSSSCG00000038507	-	100	91.071	ENSMLUG00000029871	-	100	91.071	Myotis_lucifugus
ENSSSCG00000038507	-	100	100.000	ENSMLUG00000025262	-	100	100.000	Myotis_lucifugus
ENSSSCG00000038507	-	100	100.000	ENSNGAG00000013159	Rps29	100	100.000	Nannospalax_galili
ENSSSCG00000038507	-	100	80.357	ENSNGAG00000011632	-	100	80.357	Nannospalax_galili
ENSSSCG00000038507	-	100	92.857	ENSNBRG00000021854	rps29	69	96.364	Neolamprologus_brichardi
ENSSSCG00000038507	-	100	78.571	ENSNLEG00000031810	-	64	78.571	Nomascus_leucogenys
ENSSSCG00000038507	-	100	98.214	ENSNLEG00000018259	-	100	98.214	Nomascus_leucogenys
ENSSSCG00000038507	-	100	100.000	ENSODEG00000018519	-	100	100.000	Octodon_degus
ENSSSCG00000038507	-	100	92.857	ENSODEG00000019457	-	100	92.857	Octodon_degus
ENSSSCG00000038507	-	93	94.231	ENSODEG00000019249	-	100	94.231	Octodon_degus
ENSSSCG00000038507	-	100	100.000	ENSODEG00000019220	-	100	100.000	Octodon_degus
ENSSSCG00000038507	-	100	96.429	ENSODEG00000019960	-	100	96.429	Octodon_degus
ENSSSCG00000038507	-	100	96.429	ENSONIG00000000829	rps29	100	96.429	Oreochromis_niloticus
ENSSSCG00000038507	-	100	100.000	ENSOCUG00000027423	RPS29	100	100.000	Oryctolagus_cuniculus
ENSSSCG00000038507	-	98	96.364	ENSOMEG00000010831	rps29	69	98.182	Oryzias_melastigma
ENSSSCG00000038507	-	100	89.286	ENSOGAG00000032475	-	100	89.286	Otolemur_garnettii
ENSSSCG00000038507	-	100	89.286	ENSOGAG00000033843	-	100	89.286	Otolemur_garnettii
ENSSSCG00000038507	-	100	91.071	ENSOARG00000007891	-	92	91.071	Ovis_aries
ENSSSCG00000038507	-	100	78.571	ENSPPRG00000017352	-	100	78.571	Panthera_pardus
ENSSSCG00000038507	-	100	98.214	ENSPPRG00000011061	-	100	98.214	Panthera_pardus
ENSSSCG00000038507	-	100	100.000	ENSPPRG00000022391	-	100	100.000	Panthera_pardus
ENSSSCG00000038507	-	100	100.000	ENSPTIG00000006207	-	100	100.000	Panthera_tigris_altaica
ENSSSCG00000038507	-	100	100.000	ENSPANG00000033247	-	100	100.000	Papio_anubis
ENSSSCG00000038507	-	100	89.286	ENSPANG00000029212	-	100	89.286	Papio_anubis
ENSSSCG00000038507	-	100	100.000	ENSPANG00000023730	-	100	100.000	Papio_anubis
ENSSSCG00000038507	-	100	100.000	ENSPPYG00000005785	RPS29	100	100.000	Pongo_abelii
ENSSSCG00000038507	-	100	85.714	ENSPCOG00000015576	-	100	85.714	Propithecus_coquereli
ENSSSCG00000038507	-	100	100.000	ENSPCOG00000024671	-	100	100.000	Propithecus_coquereli
ENSSSCG00000038507	-	100	100.000	ENSRNOG00000032542	LOC108351482	100	100.000	Rattus_norvegicus
ENSSSCG00000038507	-	100	100.000	ENSRNOG00000004196	LOC108350501	100	100.000	Rattus_norvegicus
ENSSSCG00000038507	-	100	100.000	ENSRNOG00000028939	Rps29	100	100.000	Rattus_norvegicus
ENSSSCG00000038507	-	100	100.000	ENSRNOG00000029443	LOC108352650	100	100.000	Rattus_norvegicus
ENSSSCG00000038507	-	100	100.000	ENSRBIG00000016462	-	100	100.000	Rhinopithecus_bieti
ENSSSCG00000038507	-	100	98.214	ENSRBIG00000007567	-	100	98.214	Rhinopithecus_bieti
ENSSSCG00000038507	-	100	100.000	ENSRBIG00000017110	-	100	100.000	Rhinopithecus_bieti
ENSSSCG00000038507	-	100	98.214	ENSRBIG00000011261	-	100	98.214	Rhinopithecus_bieti
ENSSSCG00000038507	-	100	98.214	ENSRBIG00000020563	-	100	98.214	Rhinopithecus_bieti
ENSSSCG00000038507	-	100	100.000	ENSRROG00000009633	-	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000038507	-	100	98.214	ENSRROG00000015879	-	100	98.214	Rhinopithecus_roxellana
ENSSSCG00000038507	-	100	100.000	ENSRROG00000009364	-	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000038507	-	100	96.429	ENSRROG00000017887	-	100	96.429	Rhinopithecus_roxellana
ENSSSCG00000038507	-	100	100.000	ENSRROG00000037175	-	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000038507	-	100	100.000	ENSRROG00000020854	-	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000038507	-	100	100.000	ENSRROG00000011987	-	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000038507	-	63	100.000	ENSSBOG00000029046	-	66	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000038507	-	100	98.214	ENSSBOG00000019207	-	100	98.214	Saimiri_boliviensis_boliviensis
ENSSSCG00000038507	-	100	96.429	ENSSBOG00000009349	-	100	96.429	Saimiri_boliviensis_boliviensis
ENSSSCG00000038507	-	100	98.214	ENSSBOG00000012724	-	100	98.214	Saimiri_boliviensis_boliviensis
ENSSSCG00000038507	-	98	96.364	ENSSFOG00015000394	-	73	98.182	Scleropages_formosus
ENSSSCG00000038507	-	100	94.643	ENSSDUG00000009578	rps29	62	98.182	Seriola_dumerili
ENSSSCG00000038507	-	100	92.857	ENSUAMG00000002506	-	100	92.857	Ursus_americanus
ENSSSCG00000038507	-	100	94.643	ENSUAMG00000016993	-	100	94.643	Ursus_americanus
ENSSSCG00000038507	-	98	98.182	ENSUAMG00000012422	-	85	74.419	Ursus_americanus
ENSSSCG00000038507	-	100	100.000	ENSUAMG00000022821	-	100	100.000	Ursus_americanus
ENSSSCG00000038507	-	71	87.500	ENSUAMG00000005201	-	75	87.500	Ursus_americanus
ENSSSCG00000038507	-	100	80.357	ENSUAMG00000003050	-	100	80.357	Ursus_americanus
ENSSSCG00000038507	-	98	98.182	ENSUMAG00000007648	-	85	74.419	Ursus_maritimus
ENSSSCG00000038507	-	100	91.071	ENSUMAG00000012903	-	100	91.071	Ursus_maritimus
ENSSSCG00000038507	-	100	80.357	ENSUMAG00000008130	-	100	80.357	Ursus_maritimus
ENSSSCG00000038507	-	100	94.643	ENSUMAG00000019137	-	100	94.643	Ursus_maritimus
ENSSSCG00000038507	-	100	87.500	ENSVVUG00000016811	-	100	87.500	Vulpes_vulpes
ENSSSCG00000038507	-	98	78.182	ENSVVUG00000029871	-	82	60.714	Vulpes_vulpes
ENSSSCG00000038507	-	100	94.643	ENSVVUG00000000785	-	100	94.643	Vulpes_vulpes
ENSSSCG00000038507	-	100	100.000	ENSXETG00000027734	rps29	100	100.000	Xenopus_tropicalis
ENSSSCG00000038507	-	100	94.643	ENSXCOG00000007248	rps29	71	98.182	Xiphophorus_couchianus
ENSSSCG00000038507	-	80	95.556	ENSXMAG00000019760	-	80	95.556	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002181	cytoplasmic translation	-	ISS	Process
GO:0008270	zinc ion binding	-	ISS	Function
GO:0022627	cytosolic small ribosomal subunit	24930395.	IDA	Component
GO:0042788	polysomal ribosome	-	ISS	Component
GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	24930395.	IDA	Component