EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000038587 (Gene tree)
Gene ID: 100512506
Gene Symbol: CRNKL1
Alias: CLF|CRN|Clf1|SYF3
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 32015 bases
Position: chr17:28079542-28111556
Accession: 100512506
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000043561	HAT	PF02184.16	3.7e-42	1	2
ENSSSCP00000043561	HAT	PF02184.16	3.7e-42	2	2
ENSSSCP00000042325	HAT	PF02184.16	6.1e-36	1	2
ENSSSCP00000042325	HAT	PF02184.16	6.1e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000051367	CRNKL1-202	1941	-	ENSSSCP00000042325	646 (aa)	-	A0A287AE82
ENSSSCT00000041114	CRNKL1-201	6011	XM_021077415	ENSSSCP00000043561	693 (aa)	XP_020933074	A0A287AHU4

Gene Model

Click here to download ENSSSCG00000038587's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038587's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000038587	CRNKL1	99	96.798	ENSG00000101343	CRNKL1	100	96.798	Homo_sapiens
ENSSSCG00000038587	CRNKL1	99	86.357	ENSAPOG00000009705	crnkl1	99	85.196	Acanthochromis_polyacanthus
ENSSSCG00000038587	CRNKL1	99	99.709	ENSAMEG00000000270	CRNKL1	83	99.709	Ailuropoda_melanoleuca
ENSSSCG00000038587	CRNKL1	99	84.761	ENSACIG00000015267	crnkl1	91	84.761	Amphilophus_citrinellus
ENSSSCG00000038587	CRNKL1	99	86.502	ENSAOCG00000021964	crnkl1	91	86.502	Amphiprion_ocellaris
ENSSSCG00000038587	CRNKL1	99	86.377	ENSAPEG00000015041	crnkl1	92	86.377	Amphiprion_percula
ENSSSCG00000038587	CRNKL1	99	85.818	ENSATEG00000001068	crnkl1	90	86.067	Anabas_testudineus
ENSSSCG00000038587	CRNKL1	99	90.684	ENSAPLG00000013105	CRNKL1	99	90.684	Anas_platyrhynchos
ENSSSCG00000038587	CRNKL1	99	92.972	ENSACAG00000005284	CRNKL1	99	92.972	Anolis_carolinensis
ENSSSCG00000038587	CRNKL1	91	97.943	ENSANAG00000024889	CRNKL1	100	97.943	Aotus_nancymaae
ENSSSCG00000038587	CRNKL1	99	86.522	ENSACLG00000010813	crnkl1	91	86.522	Astatotilapia_calliptera
ENSSSCG00000038587	CRNKL1	96	88.102	ENSAMXG00000018334	crnkl1	93	86.483	Astyanax_mexicanus
ENSSSCG00000038587	CRNKL1	99	98.699	ENSBTAG00000008472	CRNKL1	99	98.699	Bos_taurus
ENSSSCG00000038587	CRNKL1	92	62.364	WBGene00019762	M03F8.3	92	61.103	Caenorhabditis_elegans
ENSSSCG00000038587	CRNKL1	99	97.089	ENSCJAG00000005393	CRNKL1	100	97.089	Callithrix_jacchus
ENSSSCG00000038587	CRNKL1	99	99.418	ENSCAFG00000005333	CRNKL1	94	99.418	Canis_familiaris
ENSSSCG00000038587	CRNKL1	99	99.418	ENSCAFG00020027488	CRNKL1	100	99.418	Canis_lupus_dingo
ENSSSCG00000038587	CRNKL1	99	97.543	ENSCHIG00000013171	CRNKL1	99	97.543	Capra_hircus
ENSSSCG00000038587	CRNKL1	99	97.962	ENSTSYG00000004197	CRNKL1	100	97.962	Carlito_syrichta
ENSSSCG00000038587	CRNKL1	95	95.659	ENSCAPG00000010501	CRNKL1	100	95.659	Cavia_aperea
ENSSSCG00000038587	CRNKL1	99	96.215	ENSCPOG00000004418	CRNKL1	100	96.215	Cavia_porcellus
ENSSSCG00000038587	CRNKL1	99	96.943	ENSCCAG00000027037	CRNKL1	100	96.943	Cebus_capucinus
ENSSSCG00000038587	CRNKL1	99	97.089	ENSCATG00000034247	CRNKL1	100	97.089	Cercocebus_atys
ENSSSCG00000038587	CRNKL1	99	96.943	ENSCLAG00000013859	CRNKL1	100	96.943	Chinchilla_lanigera
ENSSSCG00000038587	CRNKL1	99	97.089	ENSCSAG00000011434	CRNKL1	100	97.089	Chlorocebus_sabaeus
ENSSSCG00000038587	CRNKL1	99	98.836	ENSCHOG00000006371	CRNKL1	84	98.836	Choloepus_hoffmanni
ENSSSCG00000038587	CRNKL1	99	94.015	ENSCPBG00000023501	CRNKL1	99	94.015	Chrysemys_picta_bellii
ENSSSCG00000038587	CRNKL1	96	69.637	ENSCING00000002709	-	99	68.228	Ciona_intestinalis
ENSSSCG00000038587	CRNKL1	99	97.234	ENSCANG00000038789	CRNKL1	100	97.234	Colobus_angolensis_palliatus
ENSSSCG00000038587	CRNKL1	99	97.674	ENSCGRG00001001115	-	99	97.674	Cricetulus_griseus_chok1gshd
ENSSSCG00000038587	CRNKL1	99	97.674	ENSCGRG00001000687	-	99	97.674	Cricetulus_griseus_chok1gshd
ENSSSCG00000038587	CRNKL1	99	97.674	ENSCGRG00000007854	Crnkl1	99	97.674	Cricetulus_griseus_crigri
ENSSSCG00000038587	CRNKL1	97	86.866	ENSCSEG00000005594	crnkl1	88	84.993	Cynoglossus_semilaevis
ENSSSCG00000038587	CRNKL1	96	87.688	ENSCVAG00000015172	crnkl1	93	85.362	Cyprinodon_variegatus
ENSSSCG00000038587	CRNKL1	96	87.160	ENSDARG00000007901	crnkl1	91	85.320	Danio_rerio
ENSSSCG00000038587	CRNKL1	99	98.830	ENSDNOG00000016226	CRNKL1	95	98.830	Dasypus_novemcinctus
ENSSSCG00000038587	CRNKL1	97	88.507	ENSDORG00000023724	-	99	88.507	Dipodomys_ordii
ENSSSCG00000038587	CRNKL1	99	96.392	ENSDORG00000000394	-	100	96.392	Dipodomys_ordii
ENSSSCG00000038587	CRNKL1	97	88.060	ENSDORG00000030174	-	99	88.060	Dipodomys_ordii
ENSSSCG00000038587	CRNKL1	95	69.670	FBgn0000377	crn	98	68.017	Drosophila_melanogaster
ENSSSCG00000038587	CRNKL1	99	85.298	ENSETEG00000003711	CRNKL1	84	85.298	Echinops_telfairi
ENSSSCG00000038587	CRNKL1	98	61.078	ENSEBUG00000013461	crnkl1	96	58.358	Eptatretus_burgeri
ENSSSCG00000038587	CRNKL1	99	99.418	ENSEASG00005002072	CRNKL1	100	99.418	Equus_asinus_asinus
ENSSSCG00000038587	CRNKL1	99	99.418	ENSECAG00000022215	CRNKL1	100	99.418	Equus_caballus
ENSSSCG00000038587	CRNKL1	99	96.215	ENSEEUG00000000413	CRNKL1	92	96.215	Erinaceus_europaeus
ENSSSCG00000038587	CRNKL1	96	86.377	ENSELUG00000015424	crnkl1	97	84.942	Esox_lucius
ENSSSCG00000038587	CRNKL1	99	99.709	ENSFCAG00000000714	CRNKL1	100	99.709	Felis_catus
ENSSSCG00000038587	CRNKL1	97	91.815	ENSFALG00000004611	CRNKL1	100	91.815	Ficedula_albicollis
ENSSSCG00000038587	CRNKL1	99	97.089	ENSFDAG00000000604	CRNKL1	100	97.089	Fukomys_damarensis
ENSSSCG00000038587	CRNKL1	97	86.776	ENSFHEG00000013163	crnkl1	90	85.094	Fundulus_heteroclitus
ENSSSCG00000038587	CRNKL1	96	86.228	ENSGMOG00000007609	crnkl1	94	84.571	Gadus_morhua
ENSSSCG00000038587	CRNKL1	99	93.723	ENSGALG00000008429	CRNKL1	99	93.723	Gallus_gallus
ENSSSCG00000038587	CRNKL1	96	87.237	ENSGAFG00000014249	crnkl1	90	85.380	Gambusia_affinis
ENSSSCG00000038587	CRNKL1	99	84.438	ENSGACG00000011852	crnkl1	93	84.438	Gasterosteus_aculeatus
ENSSSCG00000038587	CRNKL1	95	92.683	ENSGAGG00000021233	CRNKL1	100	92.908	Gopherus_agassizii
ENSSSCG00000038587	CRNKL1	99	96.798	ENSGGOG00000014176	CRNKL1	100	96.798	Gorilla_gorilla
ENSSSCG00000038587	CRNKL1	99	86.377	ENSHBUG00000005246	crnkl1	90	86.377	Haplochromis_burtoni
ENSSSCG00000038587	CRNKL1	99	97.089	ENSHGLG00000010856	CRNKL1	100	97.089	Heterocephalus_glaber_female
ENSSSCG00000038587	CRNKL1	99	97.089	ENSHGLG00100011521	CRNKL1	100	97.089	Heterocephalus_glaber_male
ENSSSCG00000038587	CRNKL1	99	82.899	ENSHCOG00000006420	crnkl1	99	82.899	Hippocampus_comes
ENSSSCG00000038587	CRNKL1	96	76.241	ENSIPUG00000006836	-	99	74.927	Ictalurus_punctatus
ENSSSCG00000038587	CRNKL1	94	87.827	ENSIPUG00000006751	crnkl1	93	85.863	Ictalurus_punctatus
ENSSSCG00000038587	CRNKL1	92	68.917	ENSIPUG00000000315	-	100	70.126	Ictalurus_punctatus
ENSSSCG00000038587	CRNKL1	99	98.253	ENSSTOG00000014747	CRNKL1	100	98.253	Ictidomys_tridecemlineatus
ENSSSCG00000038587	CRNKL1	99	96.159	ENSJJAG00000016926	Crnkl1	100	96.159	Jaculus_jaculus
ENSSSCG00000038587	CRNKL1	99	85.818	ENSKMAG00000003620	crnkl1	88	85.818	Kryptolebias_marmoratus
ENSSSCG00000038587	CRNKL1	99	76.780	ENSLBEG00000003543	crnkl1	93	76.780	Labrus_bergylta
ENSSSCG00000038587	CRNKL1	99	87.994	ENSLACG00000001129	CRNKL1	99	87.994	Latimeria_chalumnae
ENSSSCG00000038587	CRNKL1	96	89.458	ENSLOCG00000016889	crnkl1	96	87.083	Lepisosteus_oculatus
ENSSSCG00000038587	CRNKL1	99	98.837	ENSLAFG00000004512	CRNKL1	100	98.837	Loxodonta_africana
ENSSSCG00000038587	CRNKL1	99	97.089	ENSMFAG00000039893	CRNKL1	100	97.089	Macaca_fascicularis
ENSSSCG00000038587	CRNKL1	99	97.089	ENSMMUG00000007709	CRNKL1	100	97.089	Macaca_mulatta
ENSSSCG00000038587	CRNKL1	99	97.089	ENSMNEG00000037490	CRNKL1	100	97.089	Macaca_nemestrina
ENSSSCG00000038587	CRNKL1	99	97.089	ENSMLEG00000034885	CRNKL1	100	97.089	Mandrillus_leucophaeus
ENSSSCG00000038587	CRNKL1	99	85.797	ENSMAMG00000008757	crnkl1	91	85.797	Mastacembelus_armatus
ENSSSCG00000038587	CRNKL1	99	86.522	ENSMZEG00005022345	crnkl1	91	86.522	Maylandia_zebra
ENSSSCG00000038587	CRNKL1	99	93.003	ENSMGAG00000003452	CRNKL1	94	93.003	Meleagris_gallopavo
ENSSSCG00000038587	CRNKL1	99	97.529	ENSMAUG00000020764	Crnkl1	99	97.529	Mesocricetus_auratus
ENSSSCG00000038587	CRNKL1	99	98.399	ENSMICG00000006048	CRNKL1	100	98.399	Microcebus_murinus
ENSSSCG00000038587	CRNKL1	99	89.571	ENSMOCG00000000681	-	99	89.571	Microtus_ochrogaster
ENSSSCG00000038587	CRNKL1	96	69.520	ENSMOCG00000004179	-	96	69.733	Microtus_ochrogaster
ENSSSCG00000038587	CRNKL1	91	86.212	ENSMMOG00000017601	crnkl1	97	86.212	Mola_mola
ENSSSCG00000038587	CRNKL1	99	86.773	ENSMODG00000010857	-	99	86.773	Monodelphis_domestica
ENSSSCG00000038587	CRNKL1	99	92.816	ENSMODG00000005961	-	99	92.816	Monodelphis_domestica
ENSSSCG00000038587	CRNKL1	99	63.148	ENSMALG00000011211	crnkl1	90	63.135	Monopterus_albus
ENSSSCG00000038587	CRNKL1	99	98.110	MGP_CAROLIEiJ_G0024394	Crnkl1	99	98.110	Mus_caroli
ENSSSCG00000038587	CRNKL1	99	98.256	ENSMUSG00000001767	Crnkl1	99	98.256	Mus_musculus
ENSSSCG00000038587	CRNKL1	99	96.221	MGP_PahariEiJ_G0025838	Crnkl1	99	96.221	Mus_pahari
ENSSSCG00000038587	CRNKL1	99	98.110	MGP_SPRETEiJ_G0025312	Crnkl1	99	98.110	Mus_spretus
ENSSSCG00000038587	CRNKL1	99	99.563	ENSMPUG00000001226	CRNKL1	100	99.563	Mustela_putorius_furo
ENSSSCG00000038587	CRNKL1	99	98.547	ENSMLUG00000016513	CRNKL1	89	98.547	Myotis_lucifugus
ENSSSCG00000038587	CRNKL1	99	95.857	ENSNGAG00000023097	Crnkl1	100	95.857	Nannospalax_galili
ENSSSCG00000038587	CRNKL1	99	86.667	ENSNBRG00000007867	crnkl1	90	86.667	Neolamprologus_brichardi
ENSSSCG00000038587	CRNKL1	99	93.450	ENSNLEG00000009862	CRNKL1	100	93.450	Nomascus_leucogenys
ENSSSCG00000038587	CRNKL1	99	86.047	ENSMEUG00000002361	-	99	86.047	Notamacropus_eugenii
ENSSSCG00000038587	CRNKL1	97	95.821	ENSMEUG00000012167	-	100	95.821	Notamacropus_eugenii
ENSSSCG00000038587	CRNKL1	85	67.568	ENSOPRG00000009242	-	61	67.568	Ochotona_princeps
ENSSSCG00000038587	CRNKL1	99	96.798	ENSODEG00000012175	CRNKL1	100	96.798	Octodon_degus
ENSSSCG00000038587	CRNKL1	99	86.686	ENSONIG00000018728	crnkl1	91	86.686	Oreochromis_niloticus
ENSSSCG00000038587	CRNKL1	99	97.959	ENSOCUG00000015484	CRNKL1	83	97.959	Oryctolagus_cuniculus
ENSSSCG00000038587	CRNKL1	96	86.036	ENSORLG00000017240	crnkl1	94	82.318	Oryzias_latipes
ENSSSCG00000038587	CRNKL1	96	86.186	ENSORLG00020001742	crnkl1	89	86.186	Oryzias_latipes_hni
ENSSSCG00000038587	CRNKL1	96	86.186	ENSORLG00015019564	crnkl1	89	86.186	Oryzias_latipes_hsok
ENSSSCG00000038587	CRNKL1	99	84.884	ENSOMEG00000019895	crnkl1	92	84.884	Oryzias_melastigma
ENSSSCG00000038587	CRNKL1	99	97.380	ENSOGAG00000011544	CRNKL1	100	97.380	Otolemur_garnettii
ENSSSCG00000038587	CRNKL1	99	98.699	ENSOARG00000002150	CRNKL1	90	98.699	Ovis_aries
ENSSSCG00000038587	CRNKL1	98	95.441	ENSPPAG00000027847	CRNKL1	83	95.488	Pan_paniscus
ENSSSCG00000038587	CRNKL1	99	99.709	ENSPPRG00000001955	CRNKL1	100	99.709	Panthera_pardus
ENSSSCG00000038587	CRNKL1	99	99.709	ENSPTIG00000007393	CRNKL1	100	99.709	Panthera_tigris_altaica
ENSSSCG00000038587	CRNKL1	99	96.652	ENSPTRG00000030609	CRNKL1	100	96.652	Pan_troglodytes
ENSSSCG00000038587	CRNKL1	99	97.089	ENSPANG00000017420	CRNKL1	100	97.089	Papio_anubis
ENSSSCG00000038587	CRNKL1	96	83.008	ENSPKIG00000017093	crnkl1	89	82.258	Paramormyrops_kingsleyae
ENSSSCG00000038587	CRNKL1	99	92.826	ENSPSIG00000012705	CRNKL1	99	92.826	Pelodiscus_sinensis
ENSSSCG00000038587	CRNKL1	99	79.536	ENSPMGG00000006263	crnkl1	96	79.589	Periophthalmus_magnuspinnatus
ENSSSCG00000038587	CRNKL1	99	97.674	ENSPEMG00000000073	-	99	97.674	Peromyscus_maniculatus_bairdii
ENSSSCG00000038587	CRNKL1	99	81.884	ENSPMAG00000002250	crnkl1	99	81.884	Petromyzon_marinus
ENSSSCG00000038587	CRNKL1	99	95.197	ENSPCIG00000025825	CRNKL1	96	95.197	Phascolarctos_cinereus
ENSSSCG00000038587	CRNKL1	96	87.087	ENSPFOG00000005102	crnkl1	92	85.882	Poecilia_formosa
ENSSSCG00000038587	CRNKL1	96	87.087	ENSPLAG00000007288	crnkl1	89	84.884	Poecilia_latipinna
ENSSSCG00000038587	CRNKL1	96	87.237	ENSPMEG00000008865	crnkl1	92	86.029	Poecilia_mexicana
ENSSSCG00000038587	CRNKL1	96	86.787	ENSPREG00000012615	crnkl1	91	85.926	Poecilia_reticulata
ENSSSCG00000038587	CRNKL1	99	97.089	ENSPPYG00000010747	CRNKL1	81	97.089	Pongo_abelii
ENSSSCG00000038587	CRNKL1	98	92.794	ENSPCAG00000003296	CRNKL1	85	92.868	Procavia_capensis
ENSSSCG00000038587	CRNKL1	99	97.089	ENSPCOG00000017608	CRNKL1	83	97.089	Propithecus_coquereli
ENSSSCG00000038587	CRNKL1	99	98.981	ENSPVAG00000006207	CRNKL1	83	98.981	Pteropus_vampyrus
ENSSSCG00000038587	CRNKL1	99	86.377	ENSPNYG00000001977	crnkl1	90	86.377	Pundamilia_nyererei
ENSSSCG00000038587	CRNKL1	99	87.064	ENSPNAG00000001507	crnkl1	98	84.134	Pygocentrus_nattereri
ENSSSCG00000038587	CRNKL1	99	97.820	ENSRNOG00000040045	Crnkl1	99	97.820	Rattus_norvegicus
ENSSSCG00000038587	CRNKL1	99	98.256	ENSRNOG00000010587	Crnkl1	99	98.256	Rattus_norvegicus
ENSSSCG00000038587	CRNKL1	99	97.089	ENSRBIG00000031770	CRNKL1	100	97.089	Rhinopithecus_bieti
ENSSSCG00000038587	CRNKL1	99	96.943	ENSRROG00000040450	CRNKL1	100	96.943	Rhinopithecus_roxellana
ENSSSCG00000038587	CRNKL1	93	37.826	YLR117C	CLF1	99	37.916	Saccharomyces_cerevisiae
ENSSSCG00000038587	CRNKL1	99	96.943	ENSSBOG00000029672	CRNKL1	100	96.943	Saimiri_boliviensis_boliviensis
ENSSSCG00000038587	CRNKL1	95	74.810	ENSSHAG00000011199	CRNKL1	99	74.810	Sarcophilus_harrisii
ENSSSCG00000038587	CRNKL1	96	87.915	ENSSFOG00015000946	crnkl1	88	86.873	Scleropages_formosus
ENSSSCG00000038587	CRNKL1	99	85.131	ENSSMAG00000007933	crnkl1	91	84.165	Scophthalmus_maximus
ENSSSCG00000038587	CRNKL1	99	79.335	ENSSDUG00000012625	crnkl1	89	79.335	Seriola_dumerili
ENSSSCG00000038587	CRNKL1	99	85.962	ENSSLDG00000021413	crnkl1	89	85.962	Seriola_lalandi_dorsalis
ENSSSCG00000038587	CRNKL1	99	98.253	ENSSARG00000006443	CRNKL1	82	98.253	Sorex_araneus
ENSSSCG00000038587	CRNKL1	99	93.265	ENSSPUG00000005254	CRNKL1	99	93.265	Sphenodon_punctatus
ENSSSCG00000038587	CRNKL1	99	85.983	ENSSPAG00000016150	crnkl1	89	85.983	Stegastes_partitus
ENSSSCG00000038587	CRNKL1	99	92.420	ENSTGUG00000007645	CRNKL1	98	92.420	Taeniopygia_guttata
ENSSSCG00000038587	CRNKL1	97	81.045	ENSTRUG00000015417	crnkl1	91	79.738	Takifugu_rubripes
ENSSSCG00000038587	CRNKL1	96	85.607	ENSTNIG00000010710	crnkl1	99	84.180	Tetraodon_nigroviridis
ENSSSCG00000038587	CRNKL1	91	97.468	ENSTBEG00000001304	CRNKL1	82	97.468	Tupaia_belangeri
ENSSSCG00000038587	CRNKL1	90	94.880	ENSTTRG00000000484	CRNKL1	81	94.937	Tursiops_truncatus
ENSSSCG00000038587	CRNKL1	99	99.709	ENSUAMG00000018586	CRNKL1	100	99.709	Ursus_americanus
ENSSSCG00000038587	CRNKL1	99	99.709	ENSUMAG00000024957	CRNKL1	100	99.709	Ursus_maritimus
ENSSSCG00000038587	CRNKL1	99	99.418	ENSVVUG00000012559	CRNKL1	82	99.418	Vulpes_vulpes
ENSSSCG00000038587	CRNKL1	99	90.975	ENSXETG00000009698	crnkl1	99	90.975	Xenopus_tropicalis
ENSSSCG00000038587	CRNKL1	96	86.357	ENSXCOG00000000824	crnkl1	92	84.157	Xiphophorus_couchianus
ENSSSCG00000038587	CRNKL1	96	87.237	ENSXMAG00000006896	crnkl1	92	85.007	Xiphophorus_maculatus