EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000038800 (Gene tree)
Gene ID
100624565
Gene Symbol
PUF60
Alias
FIR|RoBPI|SIAHBP1
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Plus strand
Length
12187 bases
Position
chr4:812131-824317
Accession
100624565
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000057986RRM_1PF00076.221e-4312
ENSSSCP00000057986RRM_1PF00076.221e-4322
ENSSSCP00000028171RRM_1PF00076.221.3e-4312
ENSSSCP00000028171RRM_1PF00076.221.3e-4322
ENSSSCP00000053976RRM_1PF00076.222e-4312
ENSSSCP00000053976RRM_1PF00076.222e-4322
ENSSSCP00000049143RRM_1PF00076.222.3e-4312
ENSSSCP00000049143RRM_1PF00076.222.3e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000053414PUF60-2042855XM_021090439ENSSSCP00000053976570 (aa)XP_020946098A0A287BBR9
ENSSSCT00000029289PUF60-2011876XM_021090437ENSSSCP00000028171513 (aa)XP_020946096I3LVL9
ENSSSCT00000058386PUF60-2035453XM_021090436ENSSSCP00000049143587 (aa)XP_020946095A0A287AYW3
ENSSSCT00000059754PUF60-2023764-ENSSSCP00000057986469 (aa)-A0A287BP81
Gene Model
Click here to download ENSSSCG00000038800's gene model file
Pathways
Pathway IDPathway NameSource
ssc03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038800's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000038800PUF606532.432ENSSSCG00000006618CELF37932.979
ENSSSCG00000038800PUF607233.913ENSSSCG00000034815U2AF26337.255
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000038800PUF6010098.830ENSG00000179950PUF6010099.225Homo_sapiens
ENSSSCG00000038800PUF609884.902ENSAPOG00000001713puf60b9985.417Acanthochromis_polyacanthus
ENSSSCG00000038800PUF6010091.898ENSAMEG00000006406PUF609996.745Ailuropoda_melanoleuca
ENSSSCG00000038800PUF609775.397ENSACIG00000003263-9977.586Amphilophus_citrinellus
ENSSSCG00000038800PUF609782.342ENSACIG00000021705puf60b10085.413Amphilophus_citrinellus
ENSSSCG00000038800PUF609884.902ENSAOCG00000005395puf60b10086.180Amphiprion_ocellaris
ENSSSCG00000038800PUF6010078.987ENSAOCG00000015558-9782.692Amphiprion_ocellaris
ENSSSCG00000038800PUF6010073.941ENSAPEG00000001836-9976.667Amphiprion_percula
ENSSSCG00000038800PUF609882.549ENSAPEG00000011923puf60b9982.583Amphiprion_percula
ENSSSCG00000038800PUF6010076.907ENSATEG00000006303-9881.888Anabas_testudineus
ENSSSCG00000038800PUF609882.353ENSATEG00000001730puf60b9985.417Anabas_testudineus
ENSSSCG00000038800PUF6010092.964ENSAPLG00000010150PUF6010097.893Anas_platyrhynchos
ENSSSCG00000038800PUF609992.992ENSACAG00000001645PUF609796.205Anolis_carolinensis
ENSSSCG00000038800PUF6010098.830ENSANAG00000018626PUF6010099.225Aotus_nancymaae
ENSSSCG00000038800PUF609784.921ENSACLG00000004462puf60b10085.413Astatotilapia_calliptera
ENSSSCG00000038800PUF6010073.134ENSAMXG00000041030puf60b10074.719Astyanax_mexicanus
ENSSSCG00000038800PUF609885.265ENSAMXG00000036570puf60a9784.736Astyanax_mexicanus
ENSSSCG00000038800PUF609899.406ENSBTAG00000037493PUF609999.425Bos_taurus
ENSSSCG00000038800PUF607956.710WBGene00004389rnp-68652.881Caenorhabditis_elegans
ENSSSCG00000038800PUF609899.010ENSCJAG00000021485PUF609899.042Callithrix_jacchus
ENSSSCG00000038800PUF609899.208ENSCAFG00000001400PUF609998.734Canis_familiaris
ENSSSCG00000038800PUF609899.208ENSCAFG00020018754PUF609998.387Canis_lupus_dingo
ENSSSCG00000038800PUF6010094.456ENSCHIG00000001618PUF609693.043Capra_hircus
ENSSSCG00000038800PUF6010095.849ENSTSYG00000011912PUF6010099.612Carlito_syrichta
ENSSSCG00000038800PUF609893.124ENSCPOG00000014613PUF609593.446Cavia_porcellus
ENSSSCG00000038800PUF609898.812ENSCCAG00000007744PUF609898.851Cebus_capucinus
ENSSSCG00000038800PUF609898.812ENSCATG00000035405PUF609998.025Cercocebus_atys
ENSSSCG00000038800PUF609899.208ENSCLAG00000009154PUF609997.687Chinchilla_lanigera
ENSSSCG00000038800PUF6010093.817ENSCSAG00000008878PUF6010099.225Chlorocebus_sabaeus
ENSSSCG00000038800PUF609994.318ENSCPBG00000005595PUF609897.893Chrysemys_picta_bellii
ENSSSCG00000038800PUF606163.043ENSCING00000002156-8763.043Ciona_intestinalis
ENSSSCG00000038800PUF6010048.803ENSCING00000008436-10048.790Ciona_intestinalis
ENSSSCG00000038800PUF609952.917ENSCSAVG00000001385-9955.192Ciona_savignyi
ENSSSCG00000038800PUF609948.511ENSCSAVG00000004765-9750.412Ciona_savignyi
ENSSSCG00000038800PUF607998.768ENSCANG00000041843PUF6010099.281Colobus_angolensis_palliatus
ENSSSCG00000038800PUF609898.416ENSCGRG00001017442Puf609996.975Cricetulus_griseus_chok1gshd
ENSSSCG00000038800PUF6010094.030ENSCGRG00000003717Puf609997.307Cricetulus_griseus_crigri
ENSSSCG00000038800PUF609881.784ENSCSEG00000019887puf60b9384.630Cynoglossus_semilaevis
ENSSSCG00000038800PUF609973.603ENSCSEG00000014845-9175.723Cynoglossus_semilaevis
ENSSSCG00000038800PUF609784.127ENSCVAG00000009386puf60b10085.797Cyprinodon_variegatus
ENSSSCG00000038800PUF6010076.695ENSCVAG00000001560-9879.747Cyprinodon_variegatus
ENSSSCG00000038800PUF609778.447ENSDARG00000001241puf60b9996.032Danio_rerio
ENSSSCG00000038800PUF6010081.895ENSDARG00000032175puf60a9993.617Danio_rerio
ENSSSCG00000038800PUF6010084.861ENSDNOG00000043278PUF609982.014Dasypus_novemcinctus
ENSSSCG00000038800PUF609899.010ENSDORG00000004585Puf6010098.911Dipodomys_ordii
ENSSSCG00000038800PUF609550.973FBgn0028577hfp9947.610Drosophila_melanogaster
ENSSSCG00000038800PUF609572.485ENSEBUG00000005470-8872.222Eptatretus_burgeri
ENSSSCG00000038800PUF609763.176ENSEBUG00000014291puf60b8565.739Eptatretus_burgeri
ENSSSCG00000038800PUF609899.208ENSEASG00005009695PUF609999.094Equus_asinus_asinus
ENSSSCG00000038800PUF609899.208ENSECAG00000024681PUF609998.032Equus_caballus
ENSSSCG00000038800PUF609880.418ENSELUG00000006507puf60b9980.403Esox_lucius
ENSSSCG00000038800PUF609785.602ENSELUG00000018443-9985.602Esox_lucius
ENSSSCG00000038800PUF609899.208ENSFCAG00000001045PUF6010099.612Felis_catus
ENSSSCG00000038800PUF609982.061ENSFALG00000001136PUF609886.398Ficedula_albicollis
ENSSSCG00000038800PUF609898.812ENSFDAG00000017177PUF609997.331Fukomys_damarensis
ENSSSCG00000038800PUF609784.524ENSFHEG00000020046puf60b10086.180Fundulus_heteroclitus
ENSSSCG00000038800PUF6010075.899ENSFHEG00000021687PUF6010080.164Fundulus_heteroclitus
ENSSSCG00000038800PUF609775.062ENSGMOG00000006392puf60b10071.241Gadus_morhua
ENSSSCG00000038800PUF606493.314ENSGALG00000039901PUF609498.256Gallus_gallus
ENSSSCG00000038800PUF6010079.813ENSGAFG00000021040puf60b10085.605Gambusia_affinis
ENSSSCG00000038800PUF609779.641ENSGAFG00000004334-9979.042Gambusia_affinis
ENSSSCG00000038800PUF6010070.577ENSGACG00000004717puf60b9872.676Gasterosteus_aculeatus
ENSSSCG00000038800PUF6010067.021ENSGACG00000001484-10069.423Gasterosteus_aculeatus
ENSSSCG00000038800PUF609997.456ENSGAGG00000013289PUF609397.456Gopherus_agassizii
ENSSSCG00000038800PUF609898.812ENSGGOG00000004646PUF609998.025Gorilla_gorilla
ENSSSCG00000038800PUF609784.921ENSHBUG00000015118puf60b10085.413Haplochromis_burtoni
ENSSSCG00000038800PUF609782.540ENSHBUG00000009634-10082.540Haplochromis_burtoni
ENSSSCG00000038800PUF609898.812ENSHGLG00000006111PUF609997.331Heterocephalus_glaber_female
ENSSSCG00000038800PUF609898.812ENSHGLG00100012362PUF609997.331Heterocephalus_glaber_male
ENSSSCG00000038800PUF6010062.260ENSHCOG00000000378-9965.038Hippocampus_comes
ENSSSCG00000038800PUF609781.870ENSHCOG00000015541puf60b9982.037Hippocampus_comes
ENSSSCG00000038800PUF6010075.372ENSIPUG00000004660puf60b9978.531Ictalurus_punctatus
ENSSSCG00000038800PUF609881.836ENSIPUG00000002453puf60a9982.609Ictalurus_punctatus
ENSSSCG00000038800PUF6010094.243ENSSTOG00000025037PUF609998.205Ictidomys_tridecemlineatus
ENSSSCG00000038800PUF609898.812ENSJJAG00000001076Puf609997.500Jaculus_jaculus
ENSSSCG00000038800PUF6010075.158ENSKMAG00000010106-10075.746Kryptolebias_marmoratus
ENSSSCG00000038800PUF609781.958ENSKMAG00000016745puf60b10086.180Kryptolebias_marmoratus
ENSSSCG00000038800PUF6010083.117ENSLBEG00000012505puf60b10083.117Labrus_bergylta
ENSSSCG00000038800PUF607592.135ENSLACG00000005456PUF6010090.437Latimeria_chalumnae
ENSSSCG00000038800PUF6010086.679ENSLOCG00000010106puf60b9989.333Lepisosteus_oculatus
ENSSSCG00000038800PUF6010092.964ENSLAFG00000022929PUF609997.101Loxodonta_africana
ENSSSCG00000038800PUF609898.812ENSMFAG00000043373PUF609998.851Macaca_fascicularis
ENSSSCG00000038800PUF609898.812ENSMMUG00000013558PUF609998.029Macaca_mulatta
ENSSSCG00000038800PUF609898.812ENSMNEG00000031099PUF609998.025Macaca_nemestrina
ENSSSCG00000038800PUF609799.198ENSMLEG00000040009PUF6010099.225Mandrillus_leucophaeus
ENSSSCG00000038800PUF6010078.858ENSMAMG00000019476-9882.726Mastacembelus_armatus
ENSSSCG00000038800PUF609982.008ENSMAMG00000010394puf60b10083.551Mastacembelus_armatus
ENSSSCG00000038800PUF609978.947ENSMZEG00005019425-9882.150Maylandia_zebra
ENSSSCG00000038800PUF609784.921ENSMZEG00005018515puf60b10085.413Maylandia_zebra
ENSSSCG00000038800PUF609994.286ENSMGAG00000013070PUF609897.893Meleagris_gallopavo
ENSSSCG00000038800PUF606898.281ENSMAUG00000014267-9996.305Mesocricetus_auratus
ENSSSCG00000038800PUF6010079.730ENSMAUG00000018549-10079.730Mesocricetus_auratus
ENSSSCG00000038800PUF6010096.038ENSMICG00000012226PUF609999.234Microcebus_murinus
ENSSSCG00000038800PUF609898.614ENSMOCG00000018780Puf609997.670Microtus_ochrogaster
ENSSSCG00000038800PUF6010079.747ENSMMOG00000004217puf60b10085.797Mola_mola
ENSSSCG00000038800PUF609975.974ENSMMOG00000018059-9976.712Mola_mola
ENSSSCG00000038800PUF609899.208ENSMODG00000009161PUF609997.566Monodelphis_domestica
ENSSSCG00000038800PUF609874.573ENSMALG00000006797puf60b9977.652Monopterus_albus
ENSSSCG00000038800PUF609977.401ENSMALG00000000200-9979.057Monopterus_albus
ENSSSCG00000038800PUF609898.416MGP_CAROLIEiJ_G0019910Puf609996.975Mus_caroli
ENSSSCG00000038800PUF609898.416ENSMUSG00000002524Puf609996.975Mus_musculus
ENSSSCG00000038800PUF609898.416MGP_PahariEiJ_G0019920Puf609996.975Mus_pahari
ENSSSCG00000038800PUF609898.416MGP_SPRETEiJ_G0020812Puf609996.975Mus_spretus
ENSSSCG00000038800PUF6010094.243ENSMPUG00000008137PUF609898.732Mustela_putorius_furo
ENSSSCG00000038800PUF6010093.817ENSMLUG00000000238-9998.007Myotis_lucifugus
ENSSSCG00000038800PUF6010094.347ENSMLUG00000013032-10094.347Myotis_lucifugus
ENSSSCG00000038800PUF609898.812ENSNGAG00000000712Puf6010099.225Nannospalax_galili
ENSSSCG00000038800PUF609979.135ENSNBRG00000017223-9882.308Neolamprologus_brichardi
ENSSSCG00000038800PUF608277.704ENSNBRG00000013047puf60b9784.235Neolamprologus_brichardi
ENSSSCG00000038800PUF6010098.830ENSNLEG00000002156PUF6010098.830Nomascus_leucogenys
ENSSSCG00000038800PUF6067100.000ENSOPRG00000002147PUF6075100.000Ochotona_princeps
ENSSSCG00000038800PUF6070100.000ENSODEG00000014024-99100.000Octodon_degus
ENSSSCG00000038800PUF609870.588ENSODEG00000015513-9672.674Octodon_degus
ENSSSCG00000038800PUF609979.323ENSONIG00000014030-9981.629Oreochromis_niloticus
ENSSSCG00000038800PUF609881.594ENSONIG00000006247puf60b9984.659Oreochromis_niloticus
ENSSSCG00000038800PUF609674.708ENSOANG00000006962PUF609978.125Ornithorhynchus_anatinus
ENSSSCG00000038800PUF609884.314ENSORLG00000012279puf60b10085.029Oryzias_latipes
ENSSSCG00000038800PUF609975.368ENSORLG00000028655-9978.897Oryzias_latipes
ENSSSCG00000038800PUF609975.888ENSORLG00020018144-9779.502Oryzias_latipes_hni
ENSSSCG00000038800PUF609881.784ENSORLG00020007333puf6010085.029Oryzias_latipes_hni
ENSSSCG00000038800PUF609880.907ENSORLG00015007718puf60b10084.895Oryzias_latipes_hsok
ENSSSCG00000038800PUF609976.208ENSORLG00015016833-9779.502Oryzias_latipes_hsok
ENSSSCG00000038800PUF609781.944ENSOMEG00000001643puf60b9983.232Oryzias_melastigma
ENSSSCG00000038800PUF609780.556ENSOMEG00000022185-9780.422Oryzias_melastigma
ENSSSCG00000038800PUF6010094.243ENSOGAG00000006259PUF609999.094Otolemur_garnettii
ENSSSCG00000038800PUF609894.981ENSOARG00000016235PUF609996.941Ovis_aries
ENSSSCG00000038800PUF609898.812ENSPPAG00000029933PUF609998.025Pan_paniscus
ENSSSCG00000038800PUF609799.599ENSPPRG00000003257PUF6010099.612Panthera_pardus
ENSSSCG00000038800PUF609899.010ENSPTIG00000009795PUF609996.935Panthera_tigris_altaica
ENSSSCG00000038800PUF609898.614ENSPTRG00000043963-9998.551Pan_troglodytes
ENSSSCG00000038800PUF609898.614ENSPTRG00000020670PUF609997.846Pan_troglodytes
ENSSSCG00000038800PUF609898.812ENSPANG00000021936PUF609998.025Papio_anubis
ENSSSCG00000038800PUF6010086.267ENSPKIG00000012204puf60b10088.077Paramormyrops_kingsleyae
ENSSSCG00000038800PUF609885.938ENSPKIG00000004295puf60a9992.353Paramormyrops_kingsleyae
ENSSSCG00000038800PUF6010092.964ENSPSIG00000004679PUF609997.706Pelodiscus_sinensis
ENSSSCG00000038800PUF609782.051ENSPMGG00000013444puf60b9984.351Periophthalmus_magnuspinnatus
ENSSSCG00000038800PUF609898.614ENSPEMG00000008820Puf609997.842Peromyscus_maniculatus_bairdii
ENSSSCG00000038800PUF609998.235ENSPCIG00000020270PUF609999.040Phascolarctos_cinereus
ENSSSCG00000038800PUF6010076.809ENSPFOG00000011118-9980.725Poecilia_formosa
ENSSSCG00000038800PUF609883.725ENSPFOG00000019217puf60b10084.825Poecilia_formosa
ENSSSCG00000038800PUF609784.524ENSPLAG00000010754puf60b10086.180Poecilia_latipinna
ENSSSCG00000038800PUF6010076.596ENSPLAG00000017025-9180.344Poecilia_latipinna
ENSSSCG00000038800PUF609784.524ENSPMEG00000000838puf60b10086.180Poecilia_mexicana
ENSSSCG00000038800PUF6010076.809ENSPMEG00000009767-9180.725Poecilia_mexicana
ENSSSCG00000038800PUF609782.738ENSPREG00000005440puf60b10083.929Poecilia_reticulata
ENSSSCG00000038800PUF607697.759ENSPPYG00000018951-9597.602Pongo_abelii
ENSSSCG00000038800PUF607895.444ENSPCAG00000014837PUF6010099.520Procavia_capensis
ENSSSCG00000038800PUF609899.010ENSPCOG00000027981PUF609999.042Propithecus_coquereli
ENSSSCG00000038800PUF60100100.000ENSPVAG00000016167PUF608199.367Pteropus_vampyrus
ENSSSCG00000038800PUF609782.342ENSPNYG00000002556puf60b10085.413Pundamilia_nyererei
ENSSSCG00000038800PUF609978.947ENSPNYG00000004273-9882.150Pundamilia_nyererei
ENSSSCG00000038800PUF609984.630ENSPNAG00000019909puf60a10084.436Pygocentrus_nattereri
ENSSSCG00000038800PUF609780.556ENSPNAG00000019415puf60b8977.932Pygocentrus_nattereri
ENSSSCG00000038800PUF609898.416ENSRNOG00000009960Puf609997.658Rattus_norvegicus
ENSSSCG00000038800PUF609898.812ENSRBIG00000035274PUF609998.025Rhinopithecus_bieti
ENSSSCG00000038800PUF609898.812ENSRROG00000029360PUF609998.851Rhinopithecus_roxellana
ENSSSCG00000038800PUF609897.624ENSSBOG00000027089PUF609896.975Saimiri_boliviensis_boliviensis
ENSSSCG00000038800PUF608894.894ENSSHAG00000006668PUF609596.794Sarcophilus_harrisii
ENSSSCG00000038800PUF6010082.105ENSSFOG00015019371puf60a9887.324Scleropages_formosus
ENSSSCG00000038800PUF6010080.384ENSSFOG00015019619puf60b9986.437Scleropages_formosus
ENSSSCG00000038800PUF607287.879ENSSMAG00000016381puf60b7392.580Scophthalmus_maximus
ENSSSCG00000038800PUF609980.334ENSSDUG00000009935puf60b9984.444Seriola_dumerili
ENSSSCG00000038800PUF609977.083ENSSDUG00000007048-9781.081Seriola_dumerili
ENSSSCG00000038800PUF6010078.361ENSSLDG00000007366-9980.645Seriola_lalandi_dorsalis
ENSSSCG00000038800PUF609882.792ENSSLDG00000024011puf60b10083.925Seriola_lalandi_dorsalis
ENSSSCG00000038800PUF606485.757ENSSPUG00000013518PUF609485.757Sphenodon_punctatus
ENSSSCG00000038800PUF6010077.778ENSSPAG00000020285-10082.443Stegastes_partitus
ENSSSCG00000038800PUF609882.061ENSSPAG00000012144puf60b10083.925Stegastes_partitus
ENSSSCG00000038800PUF609891.379ENSTGUG00000012797-10094.636Taeniopygia_guttata
ENSSSCG00000038800PUF609881.214ENSTRUG00000005420puf60b10082.804Takifugu_rubripes
ENSSSCG00000038800PUF609779.760ENSTRUG00000008843-10080.160Takifugu_rubripes
ENSSSCG00000038800PUF6010074.200ENSTNIG00000003069-10078.011Tetraodon_nigroviridis
ENSSSCG00000038800PUF609881.214ENSTNIG00000013675puf60b10084.091Tetraodon_nigroviridis
ENSSSCG00000038800PUF608775.806ENSTBEG00000001899-10081.792Tupaia_belangeri
ENSSSCG00000038800PUF606396.284ENSTBEG00000002751-9996.271Tupaia_belangeri
ENSSSCG00000038800PUF6010093.603ENSTTRG00000017088PUF6010099.031Tursiops_truncatus
ENSSSCG00000038800PUF609899.208ENSUAMG00000024917PUF609899.234Ursus_americanus
ENSSSCG00000038800PUF6010088.913ENSUMAG00000000272PUF609593.962Ursus_maritimus
ENSSSCG00000038800PUF609899.208ENSVVUG00000022527PUF6010099.612Vulpes_vulpes
ENSSSCG00000038800PUF609993.874ENSXETG00000012469puf609994.048Xenopus_tropicalis
ENSSSCG00000038800PUF609784.524ENSXCOG00000012355puf60b10085.714Xiphophorus_couchianus
ENSSSCG00000038800PUF609880.671ENSXMAG00000010507-9979.921Xiphophorus_maculatus
ENSSSCG00000038800PUF6010083.012ENSXMAG00000001862puf60b10086.180Xiphophorus_maculatus

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