EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000038870 (Gene tree)
Gene ID: 110258158
Gene Symbol: TNRC6A
Alias: CAGH26|GW182|KIAA1460|TNRC6
Full Name: trinucleotide repeat containing 6A
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 243503 bases
Position: chrAEMK02000510.1:580337-823839
Accession: 110258158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000038310	Ago_hook	PF10427.9	2.7e-19	1	1
ENSSSCP00000052505	Ago_hook	PF10427.9	2.7e-19	1	1
ENSSSCP00000044267	Ago_hook	PF10427.9	3e-19	1	1
ENSSSCP00000057591	Ago_hook	PF10427.9	3.4e-19	1	1
ENSSSCP00000044556	Ago_hook	PF10427.9	4.4e-19	1	1
ENSSSCP00000048872	Ago_hook	PF10427.9	4.4e-19	1	1
ENSSSCP00000054433	Ago_hook	PF10427.9	3.8e-18	1	1
ENSSSCP00000047945	Ago_hook	PF10427.9	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000040546	TNRC6A-204	6482	XM_021081333	ENSSSCP00000052505	1708 (aa)	XP_020936992	A0A287A2Y7
ENSSSCT00000045367	TNRC6A-203	6811	XM_021081315	ENSSSCP00000044267	1795 (aa)	XP_020936974	A0A287AJT5
ENSSSCT00000057934	TNRC6A-202	6938	XM_021081337	ENSSSCP00000048872	1659 (aa)	XP_020936996	A0A287AKZ0
ENSSSCT00000037676	TNRC6A-201	7066	-	ENSSSCP00000044556	1659 (aa)	-	A0A287AKZ0
ENSSSCT00000042519	TNRC6A-206	6753	XM_021081322	ENSSSCP00000038310	1708 (aa)	XP_020936981	A0A287A2Y7
ENSSSCT00000040687	TNRC6A-208	5715	XM_021081319	ENSSSCP00000054433	1904 (aa)	XP_020936978	A0A287BE94
ENSSSCT00000049514	TNRC6A-205	6408	-	ENSSSCP00000047945	1600 (aa)	-	A0A287AVJ8
ENSSSCT00000047880	TNRC6A-207	7169	-	ENSSSCP00000057591	1798 (aa)	-	A0A287BNE0

Gene Model

Click here to download ENSSSCG00000038870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000038870	TNRC6A	93	50.396	ENSSSCG00000034373	TNRC6C	98	50.791
ENSSSCG00000038870	TNRC6A	97	36.190	ENSSSCG00000000078	TNRC6B	99	37.160

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000038870	TNRC6A	100	97.659	ENSG00000090905	TNRC6A	100	98.675	Homo_sapiens
ENSSSCG00000038870	TNRC6A	100	98.068	ENSAMEG00000009333	TNRC6A	99	93.580	Ailuropoda_melanoleuca
ENSSSCG00000038870	TNRC6A	100	84.642	ENSAPLG00000009978	TNRC6A	100	79.615	Anas_platyrhynchos
ENSSSCG00000038870	TNRC6A	99	55.408	ENSACAG00000011857	TNRC6A	100	55.447	Anolis_carolinensis
ENSSSCG00000038870	TNRC6A	100	97.367	ENSANAG00000025252	TNRC6A	100	95.929	Aotus_nancymaae
ENSSSCG00000038870	TNRC6A	100	57.953	ENSAMXG00000019919	tnrc6a	99	57.512	Astyanax_mexicanus
ENSSSCG00000038870	TNRC6A	100	97.541	ENSBTAG00000017999	TNRC6A	100	95.875	Bos_taurus
ENSSSCG00000038870	TNRC6A	100	97.601	ENSCJAG00000020677	TNRC6A	100	94.948	Callithrix_jacchus
ENSSSCG00000038870	TNRC6A	100	97.892	ENSCAFG00000017531	TNRC6A	100	96.453	Canis_familiaris
ENSSSCG00000038870	TNRC6A	100	96.663	ENSCAFG00020021160	TNRC6A	99	95.062	Canis_lupus_dingo
ENSSSCG00000038870	TNRC6A	100	97.227	ENSCHIG00000019448	TNRC6A	99	97.117	Capra_hircus
ENSSSCG00000038870	TNRC6A	100	97.250	ENSTSYG00000012711	TNRC6A	100	95.303	Carlito_syrichta
ENSSSCG00000038870	TNRC6A	98	100.000	ENSCPOG00000036684	TNRC6A	100	94.984	Cavia_porcellus
ENSSSCG00000038870	TNRC6A	100	97.542	ENSCCAG00000033664	TNRC6A	100	96.033	Cebus_capucinus
ENSSSCG00000038870	TNRC6A	100	97.651	ENSCATG00000019284	TNRC6A	99	96.118	Cercocebus_atys
ENSSSCG00000038870	TNRC6A	100	92.196	ENSCLAG00000010217	TNRC6A	100	90.919	Chinchilla_lanigera
ENSSSCG00000038870	TNRC6A	100	97.776	ENSCSAG00000006561	TNRC6A	100	93.791	Chlorocebus_sabaeus
ENSSSCG00000038870	TNRC6A	95	92.568	ENSCHOG00000009374	TNRC6A	95	88.019	Choloepus_hoffmanni
ENSSSCG00000038870	TNRC6A	100	83.503	ENSCPBG00000001881	TNRC6A	99	83.324	Chrysemys_picta_bellii
ENSSSCG00000038870	TNRC6A	100	97.776	ENSCANG00000041549	TNRC6A	100	96.347	Colobus_angolensis_palliatus
ENSSSCG00000038870	TNRC6A	99	95.347	ENSCGRG00001015021	Tnrc6a	100	93.219	Cricetulus_griseus_chok1gshd
ENSSSCG00000038870	TNRC6A	99	94.421	ENSCGRG00000013351	Tnrc6a	92	100.000	Cricetulus_griseus_crigri
ENSSSCG00000038870	TNRC6A	100	58.008	ENSDARG00000079688	tnrc6a	99	57.684	Danio_rerio
ENSSSCG00000038870	TNRC6A	100	95.388	ENSDNOG00000013989	TNRC6A	99	90.734	Dasypus_novemcinctus
ENSSSCG00000038870	TNRC6A	99	86.262	ENSETEG00000014658	TNRC6A	99	84.969	Echinops_telfairi
ENSSSCG00000038870	TNRC6A	100	98.069	ENSEASG00005017693	TNRC6A	100	96.608	Equus_asinus_asinus
ENSSSCG00000038870	TNRC6A	100	98.069	ENSECAG00000025056	TNRC6A	100	96.559	Equus_caballus
ENSSSCG00000038870	TNRC6A	100	91.398	ENSEEUG00000004530	TNRC6A	99	87.585	Erinaceus_europaeus
ENSSSCG00000038870	TNRC6A	100	96.663	ENSFCAG00000025236	TNRC6A	100	94.883	Felis_catus
ENSSSCG00000038870	TNRC6A	100	82.654	ENSFALG00000003757	TNRC6A	93	87.037	Ficedula_albicollis
ENSSSCG00000038870	TNRC6A	100	83.593	ENSGALG00000006068	TNRC6A	99	83.875	Gallus_gallus
ENSSSCG00000038870	TNRC6A	100	82.736	ENSGAGG00000023209	TNRC6A	99	82.928	Gopherus_agassizii
ENSSSCG00000038870	TNRC6A	100	97.601	ENSGGOG00000005137	TNRC6A	99	96.261	Gorilla_gorilla
ENSSSCG00000038870	TNRC6A	99	95.388	ENSHGLG00000012474	-	100	92.932	Heterocephalus_glaber_female
ENSSSCG00000038870	TNRC6A	99	74.563	ENSHGLG00000007368	-	93	74.006	Heterocephalus_glaber_female
ENSSSCG00000038870	TNRC6A	99	95.316	ENSHGLG00100012496	-	100	92.513	Heterocephalus_glaber_male
ENSSSCG00000038870	TNRC6A	100	96.957	ENSSTOG00000023394	TNRC6A	99	93.395	Ictidomys_tridecemlineatus
ENSSSCG00000038870	TNRC6A	99	71.238	ENSLACG00000006277	TNRC6A	100	67.885	Latimeria_chalumnae
ENSSSCG00000038870	TNRC6A	99	85.461	ENSLOCG00000005517	tnrc6a	93	83.002	Lepisosteus_oculatus
ENSSSCG00000038870	TNRC6A	100	96.687	ENSLAFG00000004209	TNRC6A	99	94.486	Loxodonta_africana
ENSSSCG00000038870	TNRC6A	100	96.620	ENSMFAG00000003824	TNRC6A	99	93.156	Macaca_fascicularis
ENSSSCG00000038870	TNRC6A	99	100.000	ENSMMUG00000020428	TNRC6A	100	96.294	Macaca_mulatta
ENSSSCG00000038870	TNRC6A	100	97.718	ENSMNEG00000034854	TNRC6A	100	96.254	Macaca_nemestrina
ENSSSCG00000038870	TNRC6A	100	96.503	ENSMLEG00000042737	TNRC6A	97	92.131	Mandrillus_leucophaeus
ENSSSCG00000038870	TNRC6A	100	84.039	ENSMGAG00000006455	TNRC6A	93	87.037	Meleagris_gallopavo
ENSSSCG00000038870	TNRC6A	99	95.331	ENSMAUG00000012750	Tnrc6a	100	93.010	Mesocricetus_auratus
ENSSSCG00000038870	TNRC6A	100	98.072	ENSMICG00000030685	TNRC6A	100	96.868	Microcebus_murinus
ENSSSCG00000038870	TNRC6A	99	95.995	ENSMOCG00000000152	Tnrc6a	100	93.633	Microtus_ochrogaster
ENSSSCG00000038870	TNRC6A	100	85.164	ENSMODG00000016348	TNRC6A	99	80.189	Monodelphis_domestica
ENSSSCG00000038870	TNRC6A	100	94.518	MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.496	Mus_caroli
ENSSSCG00000038870	TNRC6A	100	94.880	ENSMUSG00000052707	Tnrc6a	99	94.853	Mus_musculus
ENSSSCG00000038870	TNRC6A	100	95.003	MGP_PahariEiJ_G0013635	Tnrc6a	100	95.139	Mus_pahari
ENSSSCG00000038870	TNRC6A	100	94.968	MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.853	Mus_spretus
ENSSSCG00000038870	TNRC6A	99	87.333	ENSMPUG00000012324	TNRC6A	100	85.013	Mustela_putorius_furo
ENSSSCG00000038870	TNRC6A	100	94.906	ENSMLUG00000002701	TNRC6A	100	90.209	Myotis_lucifugus
ENSSSCG00000038870	TNRC6A	100	96.629	ENSNGAG00000020702	Tnrc6a	100	94.569	Nannospalax_galili
ENSSSCG00000038870	TNRC6A	100	96.152	ENSNLEG00000011851	TNRC6A	98	94.102	Nomascus_leucogenys
ENSSSCG00000038870	TNRC6A	78	89.701	ENSMEUG00000015959	-	77	84.496	Notamacropus_eugenii
ENSSSCG00000038870	TNRC6A	95	99.254	ENSOPRG00000005819	TNRC6A	96	99.254	Ochotona_princeps
ENSSSCG00000038870	TNRC6A	99	91.270	ENSODEG00000012802	TNRC6A	99	88.520	Octodon_degus
ENSSSCG00000038870	TNRC6A	100	83.951	ENSOANG00000007672	TNRC6A	99	83.956	Ornithorhynchus_anatinus
ENSSSCG00000038870	TNRC6A	100	94.912	ENSOCUG00000004325	TNRC6A	100	89.540	Oryctolagus_cuniculus
ENSSSCG00000038870	TNRC6A	100	97.545	ENSOGAG00000006666	TNRC6A	100	93.231	Otolemur_garnettii
ENSSSCG00000038870	TNRC6A	100	97.649	ENSOARG00000017950	TNRC6A	100	97.418	Ovis_aries
ENSSSCG00000038870	TNRC6A	100	97.718	ENSPPAG00000028379	TNRC6A	100	96.555	Pan_paniscus
ENSSSCG00000038870	TNRC6A	100	96.663	ENSPPRG00000005861	TNRC6A	100	94.883	Panthera_pardus
ENSSSCG00000038870	TNRC6A	98	100.000	ENSPTIG00000006346	TNRC6A	99	94.302	Panthera_tigris_altaica
ENSSSCG00000038870	TNRC6A	100	97.659	ENSPTRG00000007898	TNRC6A	99	93.281	Pan_troglodytes
ENSSSCG00000038870	TNRC6A	100	96.402	ENSPANG00000018523	TNRC6A	100	94.050	Papio_anubis
ENSSSCG00000038870	TNRC6A	96	75.862	ENSPKIG00000012859	tnrc6a	99	75.862	Paramormyrops_kingsleyae
ENSSSCG00000038870	TNRC6A	88	78.514	ENSPSIG00000003965	TNRC6A	100	79.101	Pelodiscus_sinensis
ENSSSCG00000038870	TNRC6A	99	95.570	ENSPEMG00000016318	Tnrc6a	100	93.260	Peromyscus_maniculatus_bairdii
ENSSSCG00000038870	TNRC6A	100	86.667	ENSPCIG00000012106	TNRC6A	100	83.404	Phascolarctos_cinereus
ENSSSCG00000038870	TNRC6A	100	97.074	ENSPPYG00000007202	TNRC6A	100	93.174	Pongo_abelii
ENSSSCG00000038870	TNRC6A	95	98.969	ENSPCAG00000008260	TNRC6A	94	98.969	Procavia_capensis
ENSSSCG00000038870	TNRC6A	100	95.494	ENSPCOG00000010134	TNRC6A	100	94.363	Propithecus_coquereli
ENSSSCG00000038870	TNRC6A	97	71.274	ENSPVAG00000012066	TNRC6A	99	70.931	Pteropus_vampyrus
ENSSSCG00000038870	TNRC6A	100	94.822	ENSRNOG00000024737	Tnrc6a	100	93.427	Rattus_norvegicus
ENSSSCG00000038870	TNRC6A	100	97.776	ENSRBIG00000014222	TNRC6A	100	96.188	Rhinopithecus_bieti
ENSSSCG00000038870	TNRC6A	100	97.776	ENSRROG00000032360	TNRC6A	100	93.435	Rhinopithecus_roxellana
ENSSSCG00000038870	TNRC6A	100	97.601	ENSSBOG00000036197	TNRC6A	100	97.601	Saimiri_boliviensis_boliviensis
ENSSSCG00000038870	TNRC6A	100	85.030	ENSSHAG00000008811	TNRC6A	99	85.206	Sarcophilus_harrisii
ENSSSCG00000038870	TNRC6A	96	67.515	ENSSFOG00015008920	tnrc6a	95	64.812	Scleropages_formosus
ENSSSCG00000038870	TNRC6A	79	83.696	ENSSARG00000002479	TNRC6A	89	82.790	Sorex_araneus
ENSSSCG00000038870	TNRC6A	100	79.769	ENSSPUG00000010525	TNRC6A	100	79.490	Sphenodon_punctatus
ENSSSCG00000038870	TNRC6A	100	82.974	ENSTGUG00000006142	TNRC6A	100	80.322	Taeniopygia_guttata
ENSSSCG00000038870	TNRC6A	100	94.675	ENSTBEG00000014965	TNRC6A	99	90.975	Tupaia_belangeri
ENSSSCG00000038870	TNRC6A	93	98.942	ENSTTRG00000002008	TNRC6A	93	92.333	Tursiops_truncatus
ENSSSCG00000038870	TNRC6A	87	93.261	ENSUAMG00000006656	-	93	95.626	Ursus_americanus
ENSSSCG00000038870	TNRC6A	100	98.312	ENSUMAG00000008274	TNRC6A	100	98.312	Ursus_maritimus
ENSSSCG00000038870	TNRC6A	55	84.828	ENSVPAG00000010764	-	57	84.828	Vicugna_pacos
ENSSSCG00000038870	TNRC6A	100	97.775	ENSVVUG00000005380	TNRC6A	99	96.367	Vulpes_vulpes
ENSSSCG00000038870	TNRC6A	99	67.245	ENSXETG00000030437	TNRC6A	99	64.690	Xenopus_tropicalis