EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000038916 (Gene tree)
Gene ID: 110261147
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 3739 bases
Position: chr6:92489927-92493665
Accession: 110261147
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000051263	LSM	PF01423.22	1.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000044178	LSM10-201	1412	XM_021095943	ENSSSCP00000051263	121 (aa)	XP_020951602	A0A287B594

Gene Model

Click here to download ENSSSCG00000038916's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038916's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000038916	LSM10	56	30.000	ENSSSCG00000039021	LSM2	74	30.000
ENSSSCG00000038916	LSM10	61	31.081	ENSSSCG00000003701	SNRPD1	63	30.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000038916	LSM10	100	88.618	ENSG00000181817	LSM10	100	88.618	Homo_sapiens
ENSSSCG00000038916	LSM10	100	91.870	ENSAMEG00000019854	LSM10	100	91.870	Ailuropoda_melanoleuca
ENSSSCG00000038916	LSM10	95	65.812	ENSACIG00000015420	oscp1a	77	65.812	Amphilophus_citrinellus
ENSSSCG00000038916	LSM10	96	67.797	ENSAOCG00000014654	-	98	67.797	Amphiprion_ocellaris
ENSSSCG00000038916	LSM10	96	67.797	ENSAOCG00000015618	LSM10	98	67.797	Amphiprion_ocellaris
ENSSSCG00000038916	LSM10	84	70.588	ENSAOCG00000015607	LSM10	79	70.588	Amphiprion_ocellaris
ENSSSCG00000038916	LSM10	96	67.797	ENSAPEG00000021845	-	98	67.797	Amphiprion_percula
ENSSSCG00000038916	LSM10	84	70.588	ENSAPEG00000021851	LSM10	79	70.588	Amphiprion_percula
ENSSSCG00000038916	LSM10	94	61.207	ENSATEG00000006310	oscp1a	86	61.207	Anabas_testudineus
ENSSSCG00000038916	LSM10	100	66.667	ENSACAG00000001231	LSM10	100	66.667	Anolis_carolinensis
ENSSSCG00000038916	LSM10	99	88.525	ENSANAG00000031489	-	100	88.525	Aotus_nancymaae
ENSSSCG00000038916	LSM10	100	90.244	ENSANAG00000018759	-	100	90.244	Aotus_nancymaae
ENSSSCG00000038916	LSM10	96	66.102	ENSACLG00000004728	oscp1a	96	66.102	Astatotilapia_calliptera
ENSSSCG00000038916	LSM10	97	65.254	ENSAMXG00000025301	oscp1a	98	65.254	Astyanax_mexicanus
ENSSSCG00000038916	LSM10	99	91.803	ENSBTAG00000024096	LSM10	100	91.803	Bos_taurus
ENSSSCG00000038916	LSM10	100	89.431	ENSCJAG00000044880	LSM10	100	89.431	Callithrix_jacchus
ENSSSCG00000038916	LSM10	100	93.496	ENSCAFG00000003382	LSM10	100	93.496	Canis_familiaris
ENSSSCG00000038916	LSM10	100	93.496	ENSCAFG00020008920	LSM10	100	93.496	Canis_lupus_dingo
ENSSSCG00000038916	LSM10	99	91.803	ENSCHIG00000009398	LSM10	100	91.803	Capra_hircus
ENSSSCG00000038916	LSM10	100	88.618	ENSCAPG00000012567	LSM10	100	88.618	Cavia_aperea
ENSSSCG00000038916	LSM10	100	88.618	ENSCPOG00000039302	LSM10	100	88.618	Cavia_porcellus
ENSSSCG00000038916	LSM10	100	90.244	ENSCCAG00000018913	-	100	90.244	Cebus_capucinus
ENSSSCG00000038916	LSM10	99	88.525	ENSCCAG00000008378	-	99	88.525	Cebus_capucinus
ENSSSCG00000038916	LSM10	100	88.618	ENSCATG00000006589	LSM10	100	88.618	Cercocebus_atys
ENSSSCG00000038916	LSM10	100	90.244	ENSCLAG00000008633	LSM10	100	90.244	Chinchilla_lanigera
ENSSSCG00000038916	LSM10	100	88.618	ENSCSAG00000000134	LSM10	100	88.618	Chlorocebus_sabaeus
ENSSSCG00000038916	LSM10	100	88.000	ENSCHOG00000008615	LSM10	100	88.000	Choloepus_hoffmanni
ENSSSCG00000038916	LSM10	84	30.392	ENSCSAVG00000001896	-	87	30.392	Ciona_savignyi
ENSSSCG00000038916	LSM10	100	88.618	ENSCANG00000019928	LSM10	100	88.618	Colobus_angolensis_palliatus
ENSSSCG00000038916	LSM10	93	81.034	ENSCGRG00001022673	-	93	81.034	Cricetulus_griseus_chok1gshd
ENSSSCG00000038916	LSM10	98	90.833	ENSCGRG00001004317	-	98	90.833	Cricetulus_griseus_chok1gshd
ENSSSCG00000038916	LSM10	93	81.034	ENSCGRG00000015514	-	93	81.034	Cricetulus_griseus_crigri
ENSSSCG00000038916	LSM10	98	90.833	ENSCGRG00000014935	-	98	90.833	Cricetulus_griseus_crigri
ENSSSCG00000038916	LSM10	98	61.667	ENSCSEG00000010374	oscp1a	81	61.667	Cynoglossus_semilaevis
ENSSSCG00000038916	LSM10	98	66.102	ENSCVAG00000001536	oscp1a	91	66.102	Cyprinodon_variegatus
ENSSSCG00000038916	LSM10	98	71.429	ENSDARG00000101222	oscp1a	99	71.429	Danio_rerio
ENSSSCG00000038916	LSM10	70	70.588	ENSDARG00000109563	CABZ01074453.1	99	70.588	Danio_rerio
ENSSSCG00000038916	LSM10	98	93.388	ENSDNOG00000036662	LSM10	98	93.388	Dasypus_novemcinctus
ENSSSCG00000038916	LSM10	100	90.244	ENSDORG00000007579	Lsm10	100	90.244	Dipodomys_ordii
ENSSSCG00000038916	LSM10	100	90.083	ENSETEG00000005703	LSM10	100	90.083	Echinops_telfairi
ENSSSCG00000038916	LSM10	87	55.238	ENSEBUG00000001312	oscp1a	86	55.238	Eptatretus_burgeri
ENSSSCG00000038916	LSM10	100	92.683	ENSEASG00005012194	LSM10	100	92.683	Equus_asinus_asinus
ENSSSCG00000038916	LSM10	100	93.496	ENSECAG00000005071	LSM10	100	93.496	Equus_caballus
ENSSSCG00000038916	LSM10	100	90.244	ENSEEUG00000012032	LSM10	100	90.244	Erinaceus_europaeus
ENSSSCG00000038916	LSM10	99	66.393	ENSELUG00000007452	oscp1a	100	66.393	Esox_lucius
ENSSSCG00000038916	LSM10	100	69.919	ENSFALG00000000851	LSM10	100	69.919	Ficedula_albicollis
ENSSSCG00000038916	LSM10	100	88.618	ENSFDAG00000021056	LSM10	100	88.618	Fukomys_damarensis
ENSSSCG00000038916	LSM10	93	65.217	ENSFHEG00000001058	oscp1a	98	65.217	Fundulus_heteroclitus
ENSSSCG00000038916	LSM10	88	65.421	ENSGMOG00000019832	oscp1a	90	65.421	Gadus_morhua
ENSSSCG00000038916	LSM10	100	73.984	ENSGALG00000002127	LSM10	100	73.984	Gallus_gallus
ENSSSCG00000038916	LSM10	95	59.167	ENSGAFG00000016445	oscp1a	97	59.167	Gambusia_affinis
ENSSSCG00000038916	LSM10	96	63.559	ENSGACG00000002329	oscp1a	97	63.559	Gasterosteus_aculeatus
ENSSSCG00000038916	LSM10	100	72.358	ENSGAGG00000024848	LSM10	100	72.358	Gopherus_agassizii
ENSSSCG00000038916	LSM10	100	89.431	ENSGGOG00000003556	LSM10	100	89.431	Gorilla_gorilla
ENSSSCG00000038916	LSM10	96	66.102	ENSHBUG00000001722	oscp1a	96	66.102	Haplochromis_burtoni
ENSSSCG00000038916	LSM10	100	87.805	ENSHGLG00000011625	LSM10	100	87.805	Heterocephalus_glaber_female
ENSSSCG00000038916	LSM10	100	87.805	ENSHGLG00100001769	LSM10	100	87.805	Heterocephalus_glaber_male
ENSSSCG00000038916	LSM10	93	64.602	ENSIPUG00000005808	oscp1a	98	64.602	Ictalurus_punctatus
ENSSSCG00000038916	LSM10	100	91.057	ENSSTOG00000000606	LSM10	100	91.057	Ictidomys_tridecemlineatus
ENSSSCG00000038916	LSM10	96	63.559	ENSKMAG00000012143	oscp1a	98	63.559	Kryptolebias_marmoratus
ENSSSCG00000038916	LSM10	98	62.500	ENSLBEG00000017764	oscp1a	98	62.500	Labrus_bergylta
ENSSSCG00000038916	LSM10	100	73.171	ENSLACG00000015904	LSM10	95	73.171	Latimeria_chalumnae
ENSSSCG00000038916	LSM10	98	70.000	ENSLOCG00000018277	oscp1a	98	70.000	Lepisosteus_oculatus
ENSSSCG00000038916	LSM10	100	93.388	ENSLAFG00000009600	LSM10	100	93.388	Loxodonta_africana
ENSSSCG00000038916	LSM10	100	88.618	ENSMFAG00000009115	LSM10	100	88.618	Macaca_fascicularis
ENSSSCG00000038916	LSM10	100	88.618	ENSMMUG00000017338	LSM10	100	88.618	Macaca_mulatta
ENSSSCG00000038916	LSM10	100	88.618	ENSMNEG00000020023	LSM10	100	88.618	Macaca_nemestrina
ENSSSCG00000038916	LSM10	100	88.618	ENSMLEG00000025150	LSM10	100	88.618	Mandrillus_leucophaeus
ENSSSCG00000038916	LSM10	99	63.115	ENSMAMG00000004427	oscp1a	100	63.115	Mastacembelus_armatus
ENSSSCG00000038916	LSM10	96	66.102	ENSMZEG00005026307	oscp1a	96	66.102	Maylandia_zebra
ENSSSCG00000038916	LSM10	100	74.797	ENSMGAG00000015707	LSM10	100	74.797	Meleagris_gallopavo
ENSSSCG00000038916	LSM10	98	89.167	ENSMAUG00000016624	Lsm10	98	89.167	Mesocricetus_auratus
ENSSSCG00000038916	LSM10	98	90.000	ENSMOCG00000021943	Lsm10	98	90.000	Microtus_ochrogaster
ENSSSCG00000038916	LSM10	90	66.667	ENSMMOG00000013597	oscp1a	83	66.667	Mola_mola
ENSSSCG00000038916	LSM10	100	82.114	ENSMODG00000023328	LSM10	100	82.114	Monodelphis_domestica
ENSSSCG00000038916	LSM10	59	59.211	ENSMALG00000012661	oscp1a	60	59.211	Monopterus_albus
ENSSSCG00000038916	LSM10	98	90.000	MGP_CAROLIEiJ_G0026467	Lsm10	100	92.473	Mus_caroli
ENSSSCG00000038916	LSM10	98	90.833	ENSMUSG00000050188	Lsm10	100	93.548	Mus_musculus
ENSSSCG00000038916	LSM10	98	90.833	MGP_PahariEiJ_G0028798	Lsm10	100	93.548	Mus_pahari
ENSSSCG00000038916	LSM10	98	90.833	MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	Mus_spretus
ENSSSCG00000038916	LSM10	100	93.496	ENSMPUG00000018593	LSM10	100	93.496	Mustela_putorius_furo
ENSSSCG00000038916	LSM10	100	88.618	ENSMLUG00000023895	LSM10	100	88.618	Myotis_lucifugus
ENSSSCG00000038916	LSM10	100	90.244	ENSNGAG00000015011	Lsm10	100	90.244	Nannospalax_galili
ENSSSCG00000038916	LSM10	96	66.949	ENSNBRG00000014306	oscp1a	96	66.949	Neolamprologus_brichardi
ENSSSCG00000038916	LSM10	100	90.244	ENSNLEG00000033754	LSM10	100	90.244	Nomascus_leucogenys
ENSSSCG00000038916	LSM10	100	82.114	ENSMEUG00000006313	LSM10	100	82.114	Notamacropus_eugenii
ENSSSCG00000038916	LSM10	100	89.431	ENSOPRG00000001699	LSM10	100	89.431	Ochotona_princeps
ENSSSCG00000038916	LSM10	100	90.244	ENSODEG00000019161	LSM10	100	90.244	Octodon_degus
ENSSSCG00000038916	LSM10	96	66.949	ENSONIG00000020904	oscp1a	97	66.949	Oreochromis_niloticus
ENSSSCG00000038916	LSM10	100	79.675	ENSOANG00000002066	LSM10	100	79.675	Ornithorhynchus_anatinus
ENSSSCG00000038916	LSM10	100	88.618	ENSOCUG00000005333	LSM10	100	88.618	Oryctolagus_cuniculus
ENSSSCG00000038916	LSM10	98	63.333	ENSORLG00000009504	oscp1a	99	63.333	Oryzias_latipes
ENSSSCG00000038916	LSM10	98	63.333	ENSORLG00020016201	oscp1a	99	63.333	Oryzias_latipes_hni
ENSSSCG00000038916	LSM10	96	66.379	ENSORLG00015007794	oscp1a	97	66.379	Oryzias_latipes_hsok
ENSSSCG00000038916	LSM10	100	91.057	ENSOGAG00000002653	LSM10	100	91.057	Otolemur_garnettii
ENSSSCG00000038916	LSM10	99	91.803	ENSOARG00000009596	LSM10	100	91.803	Ovis_aries
ENSSSCG00000038916	LSM10	100	88.618	ENSPPAG00000023465	LSM10	100	88.618	Pan_paniscus
ENSSSCG00000038916	LSM10	100	92.683	ENSPPRG00000014619	LSM10	100	92.683	Panthera_pardus
ENSSSCG00000038916	LSM10	100	92.683	ENSPTIG00000004613	LSM10	100	92.683	Panthera_tigris_altaica
ENSSSCG00000038916	LSM10	100	88.618	ENSPTRG00000000539	LSM10	100	88.618	Pan_troglodytes
ENSSSCG00000038916	LSM10	100	88.618	ENSPANG00000023172	LSM10	100	88.618	Papio_anubis
ENSSSCG00000038916	LSM10	100	63.415	ENSPKIG00000003728	oscp1a	99	63.415	Paramormyrops_kingsleyae
ENSSSCG00000038916	LSM10	100	70.732	ENSPSIG00000000590	LSM10	100	70.732	Pelodiscus_sinensis
ENSSSCG00000038916	LSM10	63	64.474	ENSPMGG00000015718	oscp1a	99	64.474	Periophthalmus_magnuspinnatus
ENSSSCG00000038916	LSM10	85	84.466	ENSPCIG00000014865	LSM10	76	84.466	Phascolarctos_cinereus
ENSSSCG00000038916	LSM10	91	66.964	ENSPFOG00000020490	oscp1a	95	66.964	Poecilia_formosa
ENSSSCG00000038916	LSM10	96	65.254	ENSPLAG00000016537	oscp1a	89	65.254	Poecilia_latipinna
ENSSSCG00000038916	LSM10	93	66.667	ENSPMEG00000000174	oscp1a	98	66.667	Poecilia_mexicana
ENSSSCG00000038916	LSM10	96	65.254	ENSPREG00000009899	oscp1a	89	65.254	Poecilia_reticulata
ENSSSCG00000038916	LSM10	100	89.431	ENSPPYG00000001539	LSM10	100	89.431	Pongo_abelii
ENSSSCG00000038916	LSM10	100	90.909	ENSPCAG00000002520	LSM10	100	90.909	Procavia_capensis
ENSSSCG00000038916	LSM10	100	89.431	ENSPVAG00000008644	LSM10	100	89.431	Pteropus_vampyrus
ENSSSCG00000038916	LSM10	96	66.102	ENSPNYG00000003138	oscp1a	96	66.102	Pundamilia_nyererei
ENSSSCG00000038916	LSM10	96	64.103	ENSPNAG00000028829	oscp1a	98	64.103	Pygocentrus_nattereri
ENSSSCG00000038916	LSM10	98	91.667	ENSRNOG00000025716	Lsm10	98	91.667	Rattus_norvegicus
ENSSSCG00000038916	LSM10	100	88.618	ENSRBIG00000001561	LSM10	100	88.618	Rhinopithecus_bieti
ENSSSCG00000038916	LSM10	100	88.618	ENSRROG00000011414	LSM10	100	88.618	Rhinopithecus_roxellana
ENSSSCG00000038916	LSM10	100	90.244	ENSSBOG00000036413	-	100	90.244	Saimiri_boliviensis_boliviensis
ENSSSCG00000038916	LSM10	100	81.301	ENSSHAG00000018056	LSM10	100	81.301	Sarcophilus_harrisii
ENSSSCG00000038916	LSM10	99	66.393	ENSSFOG00015019954	lsm10	100	66.393	Scleropages_formosus
ENSSSCG00000038916	LSM10	93	65.217	ENSSMAG00000001297	oscp1a	98	65.217	Scophthalmus_maximus
ENSSSCG00000038916	LSM10	99	63.415	ENSSDUG00000007090	oscp1a	100	63.415	Seriola_dumerili
ENSSSCG00000038916	LSM10	96	64.407	ENSSLDG00000000800	oscp1a	98	64.407	Seriola_lalandi_dorsalis
ENSSSCG00000038916	LSM10	100	89.600	ENSSARG00000004211	LSM10	100	90.400	Sorex_araneus
ENSSSCG00000038916	LSM10	94	65.517	ENSSPAG00000009229	oscp1a	96	65.517	Stegastes_partitus
ENSSSCG00000038916	LSM10	96	72.881	ENSTGUG00000001600	-	97	72.881	Taeniopygia_guttata
ENSSSCG00000038916	LSM10	96	72.881	ENSTGUG00000001602	-	97	72.881	Taeniopygia_guttata
ENSSSCG00000038916	LSM10	98	65.000	ENSTRUG00000010531	oscp1a	97	65.000	Takifugu_rubripes
ENSSSCG00000038916	LSM10	100	91.057	ENSTBEG00000016674	LSM10	100	91.057	Tupaia_belangeri
ENSSSCG00000038916	LSM10	100	92.683	ENSUAMG00000020265	LSM10	100	92.683	Ursus_americanus
ENSSSCG00000038916	LSM10	100	92.683	ENSUMAG00000001438	LSM10	57	92.683	Ursus_maritimus
ENSSSCG00000038916	LSM10	100	93.496	ENSVVUG00000023209	LSM10	100	93.496	Vulpes_vulpes
ENSSSCG00000038916	LSM10	100	70.248	ENSXETG00000027631	lsm10	100	70.248	Xenopus_tropicalis
ENSSSCG00000038916	LSM10	98	60.833	ENSXCOG00000018776	oscp1a	75	60.833	Xiphophorus_couchianus
ENSSSCG00000038916	LSM10	92	63.717	ENSXMAG00000019963	oscp1a	90	63.717	Xiphophorus_maculatus