EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000038950 (Gene tree)
Gene ID: 100270813
Gene Symbol: VARS
Alias: -
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 12861 bases
Position: chr7:23886206-23899066
Accession: 100270813
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000058218	tRNA-synt_1g	PF09334.11	2.9e-10	1	1
ENSSSCP00000058218	Anticodon_1	PF08264.13	5.4e-33	1	1
ENSSSCP00000058218	tRNA-synt_1	PF00133.22	2.3e-201	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000048353	-	3789	-	ENSSSCP00000058218	1262 (aa)	-	A0A287BPW4

Gene Model

Click here to download ENSSSCG00000038950's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000038950's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000038950	VARS	81	51.351	ENSSSCG00000001384	VARS2	92	54.772

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000038950	VARS	100	93.755	ENSG00000204394	VARS	100	97.701	Homo_sapiens
ENSSSCG00000038950	VARS	98	64.824	ENSAPOG00000020921	vars	99	64.503	Acanthochromis_polyacanthus
ENSSSCG00000038950	VARS	98	64.824	ENSAPOG00000020691	vars	99	64.503	Acanthochromis_polyacanthus
ENSSSCG00000038950	VARS	100	93.918	ENSAMEG00000006417	VARS	100	93.523	Ailuropoda_melanoleuca
ENSSSCG00000038950	VARS	100	65.361	ENSACIG00000013752	vars	100	65.200	Amphilophus_citrinellus
ENSSSCG00000038950	VARS	100	64.496	ENSAOCG00000002447	vars	100	63.994	Amphiprion_ocellaris
ENSSSCG00000038950	VARS	100	64.496	ENSAPEG00000010638	vars	99	64.358	Amphiprion_percula
ENSSSCG00000038950	VARS	100	64.173	ENSATEG00000020219	vars	100	63.909	Anabas_testudineus
ENSSSCG00000038950	VARS	90	70.711	ENSACAG00000029133	-	99	70.104	Anolis_carolinensis
ENSSSCG00000038950	VARS	100	93.834	ENSANAG00000015453	VARS	100	93.360	Aotus_nancymaae
ENSSSCG00000038950	VARS	100	64.446	ENSACLG00000025699	vars	97	64.286	Astatotilapia_calliptera
ENSSSCG00000038950	VARS	94	66.250	ENSAMXG00000017716	vars	95	66.250	Astyanax_mexicanus
ENSSSCG00000038950	VARS	100	96.126	ENSBTAG00000005631	VARS	100	96.126	Bos_taurus
ENSSSCG00000038950	VARS	100	93.755	ENSCJAG00000002604	VARS	100	93.281	Callithrix_jacchus
ENSSSCG00000038950	VARS	100	93.360	ENSCAFG00000000636	VARS	100	92.964	Canis_familiaris
ENSSSCG00000038950	VARS	94	93.671	ENSCAFG00020020790	VARS	96	93.249	Canis_lupus_dingo
ENSSSCG00000038950	VARS	100	96.126	ENSCHIG00000011008	VARS	100	96.126	Capra_hircus
ENSSSCG00000038950	VARS	100	94.150	ENSTSYG00000001567	VARS	100	93.676	Carlito_syrichta
ENSSSCG00000038950	VARS	91	89.888	ENSCAPG00000013736	VARS	99	89.283	Cavia_aperea
ENSSSCG00000038950	VARS	100	91.067	ENSCPOG00000000870	VARS	100	90.514	Cavia_porcellus
ENSSSCG00000038950	VARS	100	93.597	ENSCCAG00000035656	VARS	100	93.123	Cebus_capucinus
ENSSSCG00000038950	VARS	100	93.518	ENSCATG00000022394	VARS	100	93.043	Cercocebus_atys
ENSSSCG00000038950	VARS	88	88.899	ENSCLAG00000009470	VARS	92	88.374	Chinchilla_lanigera
ENSSSCG00000038950	VARS	100	93.597	ENSCSAG00000008784	VARS	100	93.123	Chlorocebus_sabaeus
ENSSSCG00000038950	VARS	77	73.819	ENSCPBG00000007943	VARS	96	73.819	Chrysemys_picta_bellii
ENSSSCG00000038950	VARS	100	93.597	ENSCANG00000033570	VARS	100	93.123	Colobus_angolensis_palliatus
ENSSSCG00000038950	VARS	100	91.858	ENSCGRG00001005686	Vars	100	91.542	Cricetulus_griseus_chok1gshd
ENSSSCG00000038950	VARS	92	86.695	ENSCGRG00000013352	Vars	78	86.360	Cricetulus_griseus_crigri
ENSSSCG00000038950	VARS	100	64.139	ENSCSEG00000019652	vars	100	63.981	Cynoglossus_semilaevis
ENSSSCG00000038950	VARS	100	65.140	ENSCVAG00000022398	vars	100	64.907	Cyprinodon_variegatus
ENSSSCG00000038950	VARS	100	64.674	ENSDARG00000044575	vars	100	64.674	Danio_rerio
ENSSSCG00000038950	VARS	83	92.256	ENSDORG00000016433	Vars	94	91.874	Dipodomys_ordii
ENSSSCG00000038950	VARS	69	86.257	ENSETEG00000003824	VARS	77	86.503	Echinops_telfairi
ENSSSCG00000038950	VARS	50	71.014	ENSEBUG00000007086	vars	84	70.332	Eptatretus_burgeri
ENSSSCG00000038950	VARS	57	62.637	ENSEBUG00000004637	vars	100	63.049	Eptatretus_burgeri
ENSSSCG00000038950	VARS	100	94.941	ENSEASG00005015673	VARS	100	94.466	Equus_asinus_asinus
ENSSSCG00000038950	VARS	100	95.257	ENSECAG00000014620	VARS	100	95.257	Equus_caballus
ENSSSCG00000038950	VARS	83	91.003	ENSEEUG00000004116	VARS	83	91.003	Erinaceus_europaeus
ENSSSCG00000038950	VARS	100	64.241	ENSELUG00000006550	vars	97	64.474	Esox_lucius
ENSSSCG00000038950	VARS	100	94.387	ENSFCAG00000004510	VARS	100	93.992	Felis_catus
ENSSSCG00000038950	VARS	82	91.658	ENSFDAG00000011401	VARS	100	91.040	Fukomys_damarensis
ENSSSCG00000038950	VARS	100	64.907	ENSFHEG00000010672	vars	100	64.907	Fundulus_heteroclitus
ENSSSCG00000038950	VARS	92	65.779	ENSGMOG00000014908	vars	97	65.779	Gadus_morhua
ENSSSCG00000038950	VARS	100	65.474	ENSGAFG00000021630	vars	100	65.241	Gambusia_affinis
ENSSSCG00000038950	VARS	92	65.609	ENSGACG00000009601	vars	98	65.196	Gasterosteus_aculeatus
ENSSSCG00000038950	VARS	50	65.142	ENSGAGG00000006508	-	91	64.826	Gopherus_agassizii
ENSSSCG00000038950	VARS	100	93.597	ENSGGOG00000011364	VARS	100	93.123	Gorilla_gorilla
ENSSSCG00000038950	VARS	100	64.446	ENSHBUG00000017151	vars	97	64.286	Haplochromis_burtoni
ENSSSCG00000038950	VARS	100	90.198	ENSHGLG00000011646	VARS	100	89.881	Heterocephalus_glaber_female
ENSSSCG00000038950	VARS	93	82.573	ENSHGLG00100018062	VARS	100	82.490	Heterocephalus_glaber_male
ENSSSCG00000038950	VARS	99	64.779	ENSHCOG00000012198	vars	99	64.875	Hippocampus_comes
ENSSSCG00000038950	VARS	100	65.008	ENSIPUG00000005218	vars	100	65.008	Ictalurus_punctatus
ENSSSCG00000038950	VARS	100	93.207	ENSSTOG00000013112	VARS	100	92.891	Ictidomys_tridecemlineatus
ENSSSCG00000038950	VARS	100	90.356	ENSJJAG00000019749	-	100	89.881	Jaculus_jaculus
ENSSSCG00000038950	VARS	100	71.146	ENSJJAG00000015343	-	99	72.392	Jaculus_jaculus
ENSSSCG00000038950	VARS	100	65.272	ENSKMAG00000009455	vars	100	65.036	Kryptolebias_marmoratus
ENSSSCG00000038950	VARS	100	64.455	ENSLBEG00000010341	vars	100	64.218	Labrus_bergylta
ENSSSCG00000038950	VARS	94	62.695	ENSLACG00000015232	VARS	99	62.859	Latimeria_chalumnae
ENSSSCG00000038950	VARS	100	66.745	ENSLOCG00000004240	vars	100	66.745	Lepisosteus_oculatus
ENSSSCG00000038950	VARS	100	93.123	ENSLAFG00000023090	VARS	100	92.411	Loxodonta_africana
ENSSSCG00000038950	VARS	100	93.597	ENSMFAG00000001032	VARS	100	93.123	Macaca_fascicularis
ENSSSCG00000038950	VARS	100	93.597	ENSMMUG00000006828	VARS	100	93.123	Macaca_mulatta
ENSSSCG00000038950	VARS	100	93.597	ENSMNEG00000042072	VARS	100	93.123	Macaca_nemestrina
ENSSSCG00000038950	VARS	100	93.518	ENSMLEG00000039307	VARS	100	93.043	Mandrillus_leucophaeus
ENSSSCG00000038950	VARS	100	64.208	ENSMAMG00000003949	vars	100	64.224	Mastacembelus_armatus
ENSSSCG00000038950	VARS	100	64.446	ENSMZEG00005018327	vars	100	64.117	Maylandia_zebra
ENSSSCG00000038950	VARS	100	91.700	ENSMAUG00000006715	Vars	100	91.383	Mesocricetus_auratus
ENSSSCG00000038950	VARS	100	93.360	ENSMICG00000003548	VARS	100	92.648	Microcebus_murinus
ENSSSCG00000038950	VARS	100	89.407	ENSMOCG00000015404	Vars	100	88.933	Microtus_ochrogaster
ENSSSCG00000038950	VARS	100	63.865	ENSMMOG00000015801	vars	100	63.786	Mola_mola
ENSSSCG00000038950	VARS	100	86.877	ENSMODG00000015204	-	100	86.561	Monodelphis_domestica
ENSSSCG00000038950	VARS	99	64.308	ENSMALG00000022532	vars	99	64.173	Monopterus_albus
ENSSSCG00000038950	VARS	100	93.123	MGP_CAROLIEiJ_G0021491	Vars	100	92.411	Mus_caroli
ENSSSCG00000038950	VARS	100	93.043	ENSMUSG00000007029	Vars	100	92.332	Mus_musculus
ENSSSCG00000038950	VARS	100	92.490	MGP_PahariEiJ_G0020486	Vars	100	91.858	Mus_pahari
ENSSSCG00000038950	VARS	100	93.123	MGP_SPRETEiJ_G0022396	Vars	100	92.411	Mus_spretus
ENSSSCG00000038950	VARS	100	94.071	ENSMPUG00000010821	VARS	100	93.676	Mustela_putorius_furo
ENSSSCG00000038950	VARS	78	94.332	ENSMLUG00000013126	VARS	100	94.332	Myotis_lucifugus
ENSSSCG00000038950	VARS	100	91.225	ENSNGAG00000012151	Vars	100	91.067	Nannospalax_galili
ENSSSCG00000038950	VARS	100	64.214	ENSNBRG00000020520	vars	100	64.053	Neolamprologus_brichardi
ENSSSCG00000038950	VARS	100	92.885	ENSNLEG00000006351	VARS	100	92.411	Nomascus_leucogenys
ENSSSCG00000038950	VARS	100	82.846	ENSMEUG00000011378	VARS	100	82.846	Notamacropus_eugenii
ENSSSCG00000038950	VARS	100	92.648	ENSOPRG00000003607	VARS	100	92.332	Ochotona_princeps
ENSSSCG00000038950	VARS	100	90.593	ENSODEG00000017681	VARS	100	90.119	Octodon_degus
ENSSSCG00000038950	VARS	100	64.844	ENSONIG00000013064	vars	99	67.507	Oreochromis_niloticus
ENSSSCG00000038950	VARS	77	78.979	ENSOANG00000005400	VARS	98	78.835	Ornithorhynchus_anatinus
ENSSSCG00000038950	VARS	100	90.845	ENSOCUG00000022463	VARS	100	91.081	Oryctolagus_cuniculus
ENSSSCG00000038950	VARS	100	64.193	ENSORLG00000013063	vars	100	64.308	Oryzias_latipes
ENSSSCG00000038950	VARS	100	64.715	ENSORLG00020003504	vars	100	64.638	Oryzias_latipes_hni
ENSSSCG00000038950	VARS	100	64.811	ENSORLG00015009001	vars	100	64.733	Oryzias_latipes_hsok
ENSSSCG00000038950	VARS	100	64.456	ENSOMEG00000015016	vars	100	64.225	Oryzias_melastigma
ENSSSCG00000038950	VARS	100	92.648	ENSOGAG00000007515	VARS	100	92.174	Otolemur_garnettii
ENSSSCG00000038950	VARS	100	93.992	ENSPPAG00000034012	VARS	100	93.518	Pan_paniscus
ENSSSCG00000038950	VARS	100	94.308	ENSPPRG00000014855	VARS	100	93.913	Panthera_pardus
ENSSSCG00000038950	VARS	85	94.243	ENSPTIG00000010462	VARS	95	93.779	Panthera_tigris_altaica
ENSSSCG00000038950	VARS	100	94.071	ENSPTRG00000017985	VARS	100	93.597	Pan_troglodytes
ENSSSCG00000038950	VARS	100	91.962	ENSPANG00000014565	VARS	100	91.489	Papio_anubis
ENSSSCG00000038950	VARS	100	63.657	ENSPKIG00000016304	vars	100	63.657	Paramormyrops_kingsleyae
ENSSSCG00000038950	VARS	100	65.642	ENSPMGG00000023909	vars	100	65.485	Periophthalmus_magnuspinnatus
ENSSSCG00000038950	VARS	100	93.123	ENSPEMG00000006639	Vars	100	92.806	Peromyscus_maniculatus_bairdii
ENSSSCG00000038950	VARS	100	85.929	ENSPCIG00000018553	VARS	100	85.613	Phascolarctos_cinereus
ENSSSCG00000038950	VARS	100	65.552	ENSPFOG00000015690	vars	100	65.319	Poecilia_formosa
ENSSSCG00000038950	VARS	100	65.959	ENSPLAG00000009590	vars	100	65.566	Poecilia_latipinna
ENSSSCG00000038950	VARS	100	65.552	ENSPMEG00000004708	vars	100	65.319	Poecilia_mexicana
ENSSSCG00000038950	VARS	100	63.808	ENSPREG00000013264	vars	100	63.480	Poecilia_reticulata
ENSSSCG00000038950	VARS	100	91.937	ENSPPYG00000016460	VARS	100	91.462	Pongo_abelii
ENSSSCG00000038950	VARS	86	90.485	ENSPCAG00000013565	VARS	86	90.485	Procavia_capensis
ENSSSCG00000038950	VARS	100	94.862	ENSPCOG00000010942	VARS	100	94.862	Propithecus_coquereli
ENSSSCG00000038950	VARS	100	90.909	ENSPVAG00000012403	VARS	100	90.198	Pteropus_vampyrus
ENSSSCG00000038950	VARS	100	64.446	ENSPNYG00000022511	vars	100	64.286	Pundamilia_nyererei
ENSSSCG00000038950	VARS	100	65.167	ENSPNAG00000020962	vars	100	65.477	Pygocentrus_nattereri
ENSSSCG00000038950	VARS	100	92.727	ENSRNOG00000000867	Vars	100	92.411	Rattus_norvegicus
ENSSSCG00000038950	VARS	100	93.676	ENSRBIG00000041669	VARS	100	93.202	Rhinopithecus_bieti
ENSSSCG00000038950	VARS	100	93.676	ENSRROG00000045490	VARS	100	93.202	Rhinopithecus_roxellana
ENSSSCG00000038950	VARS	100	93.518	ENSSBOG00000035402	VARS	100	93.043	Saimiri_boliviensis_boliviensis
ENSSSCG00000038950	VARS	100	81.319	ENSSHAG00000006937	VARS	100	81.240	Sarcophilus_harrisii
ENSSSCG00000038950	VARS	100	64.556	ENSSFOG00015014272	vars	100	64.170	Scleropages_formosus
ENSSSCG00000038950	VARS	100	63.109	ENSSMAG00000009596	vars	99	63.178	Scophthalmus_maximus
ENSSSCG00000038950	VARS	100	63.960	ENSSDUG00000014177	vars	100	63.798	Seriola_dumerili
ENSSSCG00000038950	VARS	100	63.882	ENSSLDG00000025316	vars	100	63.721	Seriola_lalandi_dorsalis
ENSSSCG00000038950	VARS	100	64.483	ENSSPAG00000017068	vars	100	64.280	Stegastes_partitus
ENSSSCG00000038950	VARS	82	63.985	ENSTRUG00000012307	vars	98	63.931	Takifugu_rubripes
ENSSSCG00000038950	VARS	100	64.973	ENSTNIG00000008011	vars	100	64.890	Tetraodon_nigroviridis
ENSSSCG00000038950	VARS	54	95.506	ENSTBEG00000004728	-	60	95.506	Tupaia_belangeri
ENSSSCG00000038950	VARS	100	87.194	ENSTTRG00000014128	VARS	100	87.115	Tursiops_truncatus
ENSSSCG00000038950	VARS	100	90.102	ENSUAMG00000010424	VARS	100	89.709	Ursus_americanus
ENSSSCG00000038950	VARS	93	94.921	ENSUMAG00000013486	VARS	98	94.921	Ursus_maritimus
ENSSSCG00000038950	VARS	100	93.518	ENSVVUG00000021323	VARS	100	93.518	Vulpes_vulpes
ENSSSCG00000038950	VARS	96	62.682	ENSXETG00000024076	vars	98	62.086	Xenopus_tropicalis
ENSSSCG00000038950	VARS	100	65.382	ENSXCOG00000019172	vars	100	65.146	Xiphophorus_couchianus
ENSSSCG00000038950	VARS	100	65.474	ENSXMAG00000010927	vars	100	65.241	Xiphophorus_maculatus