EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000039021 (Gene tree)
Gene ID: 100144534
Gene Symbol: LSM2
Alias: -
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 8147 bases
Position: chr7:23900385-23908531
Accession: 100144534
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000051484	LSM	PF01423.22	9.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000061520	-	877	-	ENSSSCP00000051484	95 (aa)	-	A5A8V8

Gene Model

Click here to download ENSSSCG00000039021's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039021's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000039021	LSM2	82	35.000	ENSSSCG00000034314	LSM4	70	32.000
ENSSSCG00000039021	LSM2	74	30.000	ENSSSCG00000038916	LSM10	56	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039021	LSM2	100	100.000	ENSG00000204392	LSM2	100	100.000	Homo_sapiens
ENSSSCG00000039021	LSM2	100	98.947	ENSAPOG00000017967	si:ch73-14h10.2	100	98.947	Acanthochromis_polyacanthus
ENSSSCG00000039021	LSM2	99	100.000	ENSAMEG00000006483	LSM2	100	100.000	Ailuropoda_melanoleuca
ENSSSCG00000039021	LSM2	99	98.936	ENSACIG00000007795	si:ch73-14h10.2	62	98.936	Amphilophus_citrinellus
ENSSSCG00000039021	LSM2	99	98.936	ENSAOCG00000006949	si:ch73-14h10.2	78	98.936	Amphiprion_ocellaris
ENSSSCG00000039021	LSM2	99	98.936	ENSAPEG00000020375	si:ch73-14h10.2	87	98.936	Amphiprion_percula
ENSSSCG00000039021	LSM2	100	98.947	ENSATEG00000011376	si:ch73-14h10.2	100	98.947	Anabas_testudineus
ENSSSCG00000039021	LSM2	99	100.000	ENSACAG00000017281	LSM2	90	100.000	Anolis_carolinensis
ENSSSCG00000039021	LSM2	100	100.000	ENSANAG00000028372	LSM2	100	100.000	Aotus_nancymaae
ENSSSCG00000039021	LSM2	96	81.319	ENSANAG00000028033	-	96	81.319	Aotus_nancymaae
ENSSSCG00000039021	LSM2	100	98.947	ENSACLG00000024717	smx5	100	98.947	Astatotilapia_calliptera
ENSSSCG00000039021	LSM2	100	98.947	ENSAMXG00000036868	si:ch73-14h10.2	100	98.947	Astyanax_mexicanus
ENSSSCG00000039021	LSM2	100	100.000	ENSBTAG00000005634	LSM2	100	100.000	Bos_taurus
ENSSSCG00000039021	LSM2	99	84.043	WBGene00001808	gut-2	97	84.043	Caenorhabditis_elegans
ENSSSCG00000039021	LSM2	100	100.000	ENSCJAG00000040899	LSM2	100	100.000	Callithrix_jacchus
ENSSSCG00000039021	LSM2	75	98.592	ENSCAFG00020016978	-	88	98.592	Canis_lupus_dingo
ENSSSCG00000039021	LSM2	99	100.000	ENSCHIG00000016153	LSM2	100	100.000	Capra_hircus
ENSSSCG00000039021	LSM2	100	100.000	ENSTSYG00000034844	LSM2	100	100.000	Carlito_syrichta
ENSSSCG00000039021	LSM2	99	89.362	ENSTSYG00000030015	-	100	89.362	Carlito_syrichta
ENSSSCG00000039021	LSM2	76	100.000	ENSCAPG00000009970	LSM2	92	100.000	Cavia_aperea
ENSSSCG00000039021	LSM2	100	100.000	ENSCPOG00000021053	LSM2	100	100.000	Cavia_porcellus
ENSSSCG00000039021	LSM2	100	100.000	ENSCCAG00000024276	LSM2	100	100.000	Cebus_capucinus
ENSSSCG00000039021	LSM2	100	100.000	ENSCATG00000013737	LSM2	100	100.000	Cercocebus_atys
ENSSSCG00000039021	LSM2	100	100.000	ENSCLAG00000008081	LSM2	100	100.000	Chinchilla_lanigera
ENSSSCG00000039021	LSM2	100	100.000	ENSCSAG00000008800	LSM2	100	100.000	Chlorocebus_sabaeus
ENSSSCG00000039021	LSM2	100	100.000	ENSCHOG00000007702	LSM2	100	100.000	Choloepus_hoffmanni
ENSSSCG00000039021	LSM2	100	95.789	ENSCING00000022677	-	100	95.789	Ciona_intestinalis
ENSSSCG00000039021	LSM2	100	100.000	ENSCANG00000039576	LSM2	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000039021	LSM2	100	100.000	ENSCGRG00001013932	Lsm2	100	100.000	Cricetulus_griseus_chok1gshd
ENSSSCG00000039021	LSM2	76	100.000	ENSCGRG00000013311	Lsm2	62	100.000	Cricetulus_griseus_crigri
ENSSSCG00000039021	LSM2	100	98.947	ENSCSEG00000002911	si:ch73-14h10.2	100	98.947	Cynoglossus_semilaevis
ENSSSCG00000039021	LSM2	99	98.936	ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	Cyprinodon_variegatus
ENSSSCG00000039021	LSM2	100	98.947	ENSDARG00000070867	smx5	100	98.947	Danio_rerio
ENSSSCG00000039021	LSM2	99	100.000	ENSDNOG00000002633	LSM2	100	100.000	Dasypus_novemcinctus
ENSSSCG00000039021	LSM2	100	100.000	ENSDORG00000026571	Lsm2	100	100.000	Dipodomys_ordii
ENSSSCG00000039021	LSM2	96	95.604	FBgn0036277	CG10418	96	95.604	Drosophila_melanogaster
ENSSSCG00000039021	LSM2	99	100.000	ENSEASG00005015670	LSM2	79	100.000	Equus_asinus_asinus
ENSSSCG00000039021	LSM2	99	100.000	ENSECAG00000018791	LSM2	79	100.000	Equus_caballus
ENSSSCG00000039021	LSM2	100	100.000	ENSELUG00000008241	smx5	100	100.000	Esox_lucius
ENSSSCG00000039021	LSM2	100	100.000	ENSFCAG00000045887	LSM2	100	100.000	Felis_catus
ENSSSCG00000039021	LSM2	100	100.000	ENSFDAG00000000390	LSM2	100	100.000	Fukomys_damarensis
ENSSSCG00000039021	LSM2	99	95.833	ENSFHEG00000009619	si:ch73-14h10.2	100	95.833	Fundulus_heteroclitus
ENSSSCG00000039021	LSM2	99	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
ENSSSCG00000039021	LSM2	100	98.947	ENSGAFG00000017286	si:ch73-14h10.2	100	98.947	Gambusia_affinis
ENSSSCG00000039021	LSM2	100	98.947	ENSGACG00000003827	si:ch73-14h10.2	100	98.947	Gasterosteus_aculeatus
ENSSSCG00000039021	LSM2	100	100.000	ENSGAGG00000012458	LSM2	100	100.000	Gopherus_agassizii
ENSSSCG00000039021	LSM2	100	100.000	ENSGGOG00000011383	LSM2	100	100.000	Gorilla_gorilla
ENSSSCG00000039021	LSM2	100	100.000	ENSHGLG00000011299	LSM2	100	100.000	Heterocephalus_glaber_female
ENSSSCG00000039021	LSM2	100	100.000	ENSHGLG00100017194	LSM2	100	100.000	Heterocephalus_glaber_male
ENSSSCG00000039021	LSM2	100	98.947	ENSHCOG00000014057	si:ch73-14h10.2	100	98.947	Hippocampus_comes
ENSSSCG00000039021	LSM2	100	98.947	ENSIPUG00000010539	lsm2	100	98.947	Ictalurus_punctatus
ENSSSCG00000039021	LSM2	100	100.000	ENSSTOG00000013144	LSM2	100	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000039021	LSM2	94	77.528	ENSJJAG00000019477	-	100	77.528	Jaculus_jaculus
ENSSSCG00000039021	LSM2	100	98.947	ENSKMAG00000014909	si:ch73-14h10.2	100	98.947	Kryptolebias_marmoratus
ENSSSCG00000039021	LSM2	99	97.872	ENSLBEG00000025781	si:ch73-14h10.2	98	97.872	Labrus_bergylta
ENSSSCG00000039021	LSM2	100	98.947	ENSLACG00000015064	LSM2	100	98.947	Latimeria_chalumnae
ENSSSCG00000039021	LSM2	100	98.947	ENSLOCG00000005228	si:ch73-14h10.2	100	98.947	Lepisosteus_oculatus
ENSSSCG00000039021	LSM2	99	100.000	ENSLAFG00000016139	LSM2	100	100.000	Loxodonta_africana
ENSSSCG00000039021	LSM2	100	100.000	ENSMFAG00000001016	LSM2	100	100.000	Macaca_fascicularis
ENSSSCG00000039021	LSM2	100	100.000	ENSMMUG00000006832	LSM2	100	100.000	Macaca_mulatta
ENSSSCG00000039021	LSM2	99	81.915	ENSMMUG00000045473	-	97	81.915	Macaca_mulatta
ENSSSCG00000039021	LSM2	100	100.000	ENSMNEG00000045355	LSM2	100	100.000	Macaca_nemestrina
ENSSSCG00000039021	LSM2	79	85.333	ENSMNEG00000040973	-	91	85.333	Macaca_nemestrina
ENSSSCG00000039021	LSM2	99	80.851	ENSMLEG00000031181	-	97	80.851	Mandrillus_leucophaeus
ENSSSCG00000039021	LSM2	100	100.000	ENSMLEG00000037369	-	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000039021	LSM2	100	98.947	ENSMAMG00000010053	si:ch73-14h10.2	73	98.947	Mastacembelus_armatus
ENSSSCG00000039021	LSM2	99	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
ENSSSCG00000039021	LSM2	100	100.000	ENSMAUG00000021966	Lsm2	100	100.000	Mesocricetus_auratus
ENSSSCG00000039021	LSM2	76	79.167	ENSMICG00000046764	-	92	79.167	Microcebus_murinus
ENSSSCG00000039021	LSM2	100	100.000	ENSMOCG00000015306	Lsm2	100	100.000	Microtus_ochrogaster
ENSSSCG00000039021	LSM2	99	97.872	ENSMMOG00000005603	si:ch73-14h10.2	100	97.872	Mola_mola
ENSSSCG00000039021	LSM2	99	98.936	ENSMODG00000015177	LSM2	99	98.936	Monodelphis_domestica
ENSSSCG00000039021	LSM2	100	98.947	ENSMALG00000016490	si:ch73-14h10.2	100	98.947	Monopterus_albus
ENSSSCG00000039021	LSM2	100	100.000	MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	Mus_caroli
ENSSSCG00000039021	LSM2	100	100.000	ENSMUSG00000007050	Lsm2	100	100.000	Mus_musculus
ENSSSCG00000039021	LSM2	100	100.000	MGP_PahariEiJ_G0020485	Lsm2	100	100.000	Mus_pahari
ENSSSCG00000039021	LSM2	100	100.000	MGP_SPRETEiJ_G0022395	Lsm2	100	100.000	Mus_spretus
ENSSSCG00000039021	LSM2	100	100.000	ENSNGAG00000003997	Lsm2	100	100.000	Nannospalax_galili
ENSSSCG00000039021	LSM2	99	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
ENSSSCG00000039021	LSM2	100	100.000	ENSNLEG00000035542	LSM2	100	100.000	Nomascus_leucogenys
ENSSSCG00000039021	LSM2	75	98.592	ENSMEUG00000003419	LSM2	100	98.592	Notamacropus_eugenii
ENSSSCG00000039021	LSM2	100	100.000	ENSOPRG00000003668	LSM2	100	100.000	Ochotona_princeps
ENSSSCG00000039021	LSM2	100	100.000	ENSODEG00000017583	LSM2	100	100.000	Octodon_degus
ENSSSCG00000039021	LSM2	100	98.947	ENSONIG00000019321	si:ch73-14h10.2	100	98.947	Oreochromis_niloticus
ENSSSCG00000039021	LSM2	99	100.000	ENSOANG00000005398	LSM2	100	100.000	Ornithorhynchus_anatinus
ENSSSCG00000039021	LSM2	100	100.000	ENSOCUG00000002583	LSM2	100	100.000	Oryctolagus_cuniculus
ENSSSCG00000039021	LSM2	100	98.947	ENSORLG00000029858	si:ch73-14h10.2	100	98.947	Oryzias_latipes
ENSSSCG00000039021	LSM2	100	75.806	ENSORLG00015000465	si:ch73-14h10.2	100	75.806	Oryzias_latipes_hsok
ENSSSCG00000039021	LSM2	100	98.947	ENSOMEG00000002892	si:ch73-14h10.2	100	98.947	Oryzias_melastigma
ENSSSCG00000039021	LSM2	99	100.000	ENSOARG00000004575	LSM2	100	100.000	Ovis_aries
ENSSSCG00000039021	LSM2	79	86.667	ENSPPAG00000043941	-	93	86.667	Pan_paniscus
ENSSSCG00000039021	LSM2	100	100.000	ENSPPAG00000032431	LSM2	100	100.000	Pan_paniscus
ENSSSCG00000039021	LSM2	100	100.000	ENSPPRG00000015353	LSM2	100	100.000	Panthera_pardus
ENSSSCG00000039021	LSM2	99	100.000	ENSPTIG00000010303	LSM2	99	100.000	Panthera_tigris_altaica
ENSSSCG00000039021	LSM2	100	100.000	ENSPTRG00000017986	LSM2	100	100.000	Pan_troglodytes
ENSSSCG00000039021	LSM2	100	100.000	ENSPANG00000024577	LSM2	100	100.000	Papio_anubis
ENSSSCG00000039021	LSM2	100	98.947	ENSPKIG00000007028	si:ch73-14h10.2	100	98.947	Paramormyrops_kingsleyae
ENSSSCG00000039021	LSM2	99	100.000	ENSPSIG00000004458	LSM2	78	100.000	Pelodiscus_sinensis
ENSSSCG00000039021	LSM2	99	96.809	ENSPMGG00000018511	si:ch73-14h10.2	100	96.809	Periophthalmus_magnuspinnatus
ENSSSCG00000039021	LSM2	99	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
ENSSSCG00000039021	LSM2	100	98.947	ENSPFOG00000001621	si:ch73-14h10.2	100	98.947	Poecilia_formosa
ENSSSCG00000039021	LSM2	100	98.947	ENSPLAG00000017165	si:ch73-14h10.2	100	98.947	Poecilia_latipinna
ENSSSCG00000039021	LSM2	100	98.947	ENSPMEG00000019574	si:ch73-14h10.2	100	98.947	Poecilia_mexicana
ENSSSCG00000039021	LSM2	99	97.872	ENSPREG00000016534	si:ch73-14h10.2	100	97.872	Poecilia_reticulata
ENSSSCG00000039021	LSM2	100	100.000	ENSPPYG00000016461	-	54	100.000	Pongo_abelii
ENSSSCG00000039021	LSM2	100	100.000	ENSPCAG00000013737	LSM2	100	100.000	Procavia_capensis
ENSSSCG00000039021	LSM2	100	100.000	ENSPCOG00000020134	LSM2	100	100.000	Propithecus_coquereli
ENSSSCG00000039021	LSM2	100	100.000	ENSPVAG00000012405	LSM2	100	100.000	Pteropus_vampyrus
ENSSSCG00000039021	LSM2	100	98.947	ENSPNYG00000019298	smx5	100	98.947	Pundamilia_nyererei
ENSSSCG00000039021	LSM2	100	98.947	ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	Pygocentrus_nattereri
ENSSSCG00000039021	LSM2	100	100.000	ENSRNOG00000048725	Lsm2	100	100.000	Rattus_norvegicus
ENSSSCG00000039021	LSM2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSSSCG00000039021	LSM2	79	86.667	ENSRBIG00000011356	-	91	86.667	Rhinopithecus_bieti
ENSSSCG00000039021	LSM2	100	100.000	ENSRBIG00000010172	LSM2	100	100.000	Rhinopithecus_bieti
ENSSSCG00000039021	LSM2	100	100.000	ENSRROG00000030345	LSM2	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000039021	LSM2	79	86.667	ENSRROG00000030708	-	91	86.667	Rhinopithecus_roxellana
ENSSSCG00000039021	LSM2	100	63.158	YBL026W	LSM2	100	63.158	Saccharomyces_cerevisiae
ENSSSCG00000039021	LSM2	100	100.000	ENSSBOG00000018943	LSM2	100	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000039021	LSM2	100	98.947	ENSSFOG00015006734	lsm2	100	98.947	Scleropages_formosus
ENSSSCG00000039021	LSM2	100	98.947	ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	Scophthalmus_maximus
ENSSSCG00000039021	LSM2	100	98.947	ENSSDUG00000021605	smx5	100	98.947	Seriola_dumerili
ENSSSCG00000039021	LSM2	100	98.947	ENSSLDG00000002765	si:ch73-14h10.2	100	98.947	Seriola_lalandi_dorsalis
ENSSSCG00000039021	LSM2	100	98.947	ENSSPUG00000009631	LSM2	100	98.947	Sphenodon_punctatus
ENSSSCG00000039021	LSM2	100	98.947	ENSSPAG00000016904	si:ch73-14h10.2	100	98.947	Stegastes_partitus
ENSSSCG00000039021	LSM2	99	97.872	ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	Takifugu_rubripes
ENSSSCG00000039021	LSM2	69	95.455	ENSTNIG00000013770	si:ch73-14h10.2	99	95.455	Tetraodon_nigroviridis
ENSSSCG00000039021	LSM2	100	100.000	ENSTTRG00000014131	LSM2	100	100.000	Tursiops_truncatus
ENSSSCG00000039021	LSM2	99	100.000	ENSUMAG00000013425	LSM2	65	100.000	Ursus_maritimus
ENSSSCG00000039021	LSM2	99	100.000	ENSVPAG00000001761	LSM2	100	100.000	Vicugna_pacos
ENSSSCG00000039021	LSM2	79	98.667	ENSVVUG00000016264	-	93	98.667	Vulpes_vulpes
ENSSSCG00000039021	LSM2	100	98.947	ENSXETG00000024077	lsm2	100	98.947	Xenopus_tropicalis
ENSSSCG00000039021	LSM2	99	97.872	ENSXCOG00000006078	si:ch73-14h10.2	100	97.872	Xiphophorus_couchianus
ENSSSCG00000039021	LSM2	99	97.872	ENSXMAG00000028018	si:ch73-14h10.2	100	97.872	Xiphophorus_maculatus