EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000039058 (Gene tree)
Gene ID: 100627320
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 11228 bases
Position: chr15:48348778-48360005
Accession: 100627320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000052521	LSM	PF01423.22	3.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000039622	LSM1-201	1083	XM_005671778	ENSSSCP00000052521	133 (aa)	XP_005671835	A0A287B8U6

Gene Model

Click here to download ENSSSCG00000039058's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039058's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000039058	LSM1	65	34.091	ENSSSCG00000021652	LSM8	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039058	LSM1	100	98.496	ENSG00000175324	LSM1	100	98.496	Homo_sapiens
ENSSSCG00000039058	LSM1	100	84.211	ENSAPOG00000010833	lsm1	100	84.211	Acanthochromis_polyacanthus
ENSSSCG00000039058	LSM1	100	98.496	ENSAMEG00000011141	LSM1	100	98.496	Ailuropoda_melanoleuca
ENSSSCG00000039058	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSSSCG00000039058	LSM1	100	84.211	ENSAOCG00000017096	lsm1	100	84.211	Amphiprion_ocellaris
ENSSSCG00000039058	LSM1	100	84.211	ENSAOCG00000017997	-	100	84.211	Amphiprion_ocellaris
ENSSSCG00000039058	LSM1	100	84.211	ENSAPEG00000011669	lsm1	100	84.211	Amphiprion_percula
ENSSSCG00000039058	LSM1	100	84.211	ENSATEG00000022266	lsm1	100	84.211	Anabas_testudineus
ENSSSCG00000039058	LSM1	100	98.496	ENSANAG00000027785	LSM1	100	98.496	Aotus_nancymaae
ENSSSCG00000039058	LSM1	100	84.211	ENSACLG00000011400	lsm1	100	84.211	Astatotilapia_calliptera
ENSSSCG00000039058	LSM1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSSSCG00000039058	LSM1	100	97.744	ENSBTAG00000001612	LSM1	100	97.744	Bos_taurus
ENSSSCG00000039058	LSM1	87	52.542	WBGene00003076	lsm-1	90	52.542	Caenorhabditis_elegans
ENSSSCG00000039058	LSM1	100	97.744	ENSCJAG00000048015	LSM1	100	97.744	Callithrix_jacchus
ENSSSCG00000039058	LSM1	100	98.496	ENSCAFG00000006113	LSM1	100	98.496	Canis_familiaris
ENSSSCG00000039058	LSM1	100	98.496	ENSCAFG00020001822	LSM1	100	98.496	Canis_lupus_dingo
ENSSSCG00000039058	LSM1	100	98.496	ENSCHIG00000013194	LSM1	100	98.496	Capra_hircus
ENSSSCG00000039058	LSM1	100	98.496	ENSTSYG00000010394	LSM1	100	98.496	Carlito_syrichta
ENSSSCG00000039058	LSM1	100	98.496	ENSCPOG00000032671	LSM1	100	98.496	Cavia_porcellus
ENSSSCG00000039058	LSM1	100	98.496	ENSCCAG00000037171	LSM1	100	98.496	Cebus_capucinus
ENSSSCG00000039058	LSM1	100	98.496	ENSCATG00000020377	LSM1	100	98.496	Cercocebus_atys
ENSSSCG00000039058	LSM1	100	98.496	ENSCLAG00000001137	LSM1	100	98.496	Chinchilla_lanigera
ENSSSCG00000039058	LSM1	100	98.496	ENSCSAG00000015485	LSM1	100	98.496	Chlorocebus_sabaeus
ENSSSCG00000039058	LSM1	100	97.744	ENSCHOG00000006030	LSM1	100	97.744	Choloepus_hoffmanni
ENSSSCG00000039058	LSM1	95	88.976	ENSCPBG00000006569	LSM1	86	88.976	Chrysemys_picta_bellii
ENSSSCG00000039058	LSM1	99	66.667	ENSCING00000013536	-	99	66.667	Ciona_intestinalis
ENSSSCG00000039058	LSM1	100	98.496	ENSCANG00000019173	LSM1	100	98.496	Colobus_angolensis_palliatus
ENSSSCG00000039058	LSM1	80	82.883	ENSCGRG00001002259	-	97	82.883	Cricetulus_griseus_chok1gshd
ENSSSCG00000039058	LSM1	100	99.248	ENSCGRG00001024560	-	100	99.248	Cricetulus_griseus_chok1gshd
ENSSSCG00000039058	LSM1	80	82.883	ENSCGRG00000013603	-	97	82.883	Cricetulus_griseus_crigri
ENSSSCG00000039058	LSM1	100	99.248	ENSCGRG00000006554	-	100	99.248	Cricetulus_griseus_crigri
ENSSSCG00000039058	LSM1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
ENSSSCG00000039058	LSM1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
ENSSSCG00000039058	LSM1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSSSCG00000039058	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSSSCG00000039058	LSM1	100	98.496	ENSDNOG00000046387	-	100	98.496	Dasypus_novemcinctus
ENSSSCG00000039058	LSM1	100	97.744	ENSDNOG00000032911	-	100	97.744	Dasypus_novemcinctus
ENSSSCG00000039058	LSM1	100	92.481	ENSDNOG00000030989	-	100	92.481	Dasypus_novemcinctus
ENSSSCG00000039058	LSM1	89	78.151	ENSDNOG00000046620	-	100	78.151	Dasypus_novemcinctus
ENSSSCG00000039058	LSM1	100	98.496	ENSDORG00000028172	Lsm1	100	98.496	Dipodomys_ordii
ENSSSCG00000039058	LSM1	93	64.516	FBgn0261067	LSm1	91	64.516	Drosophila_melanogaster
ENSSSCG00000039058	LSM1	100	98.496	ENSEASG00005016677	LSM1	100	98.496	Equus_asinus_asinus
ENSSSCG00000039058	LSM1	100	98.496	ENSECAG00000010461	LSM1	100	98.496	Equus_caballus
ENSSSCG00000039058	LSM1	100	69.925	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSSSCG00000039058	LSM1	100	86.466	ENSELUG00000002322	lsm1	100	86.466	Esox_lucius
ENSSSCG00000039058	LSM1	100	84.211	ENSELUG00000023374	lsm1	100	84.211	Esox_lucius
ENSSSCG00000039058	LSM1	100	98.496	ENSFCAG00000039335	LSM1	100	98.496	Felis_catus
ENSSSCG00000039058	LSM1	89	94.915	ENSFALG00000006723	LSM1	100	94.915	Ficedula_albicollis
ENSSSCG00000039058	LSM1	100	98.496	ENSFDAG00000007658	LSM1	100	98.496	Fukomys_damarensis
ENSSSCG00000039058	LSM1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSSSCG00000039058	LSM1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSSSCG00000039058	LSM1	100	93.233	ENSGALG00000003245	LSM1	100	93.233	Gallus_gallus
ENSSSCG00000039058	LSM1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSSSCG00000039058	LSM1	100	84.211	ENSGACG00000011763	lsm1	98	84.211	Gasterosteus_aculeatus
ENSSSCG00000039058	LSM1	100	95.489	ENSGAGG00000024065	LSM1	100	95.489	Gopherus_agassizii
ENSSSCG00000039058	LSM1	100	98.496	ENSGGOG00000022658	LSM1	100	98.496	Gorilla_gorilla
ENSSSCG00000039058	LSM1	100	84.211	ENSHBUG00000010897	lsm1	100	84.211	Haplochromis_burtoni
ENSSSCG00000039058	LSM1	100	78.195	ENSHGLG00000017574	-	100	78.195	Heterocephalus_glaber_female
ENSSSCG00000039058	LSM1	100	98.496	ENSHGLG00000005711	LSM1	100	98.496	Heterocephalus_glaber_female
ENSSSCG00000039058	LSM1	100	98.496	ENSHGLG00100017660	LSM1	100	98.496	Heterocephalus_glaber_male
ENSSSCG00000039058	LSM1	100	78.195	ENSHGLG00100012152	-	100	78.195	Heterocephalus_glaber_male
ENSSSCG00000039058	LSM1	100	82.707	ENSHCOG00000017233	lsm1	100	82.707	Hippocampus_comes
ENSSSCG00000039058	LSM1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSSSCG00000039058	LSM1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000039058	LSM1	100	96.992	ENSJJAG00000014605	-	100	96.992	Jaculus_jaculus
ENSSSCG00000039058	LSM1	100	84.211	ENSKMAG00000003016	lsm1	100	84.211	Kryptolebias_marmoratus
ENSSSCG00000039058	LSM1	100	84.211	ENSLBEG00000022352	lsm1	100	84.211	Labrus_bergylta
ENSSSCG00000039058	LSM1	89	90.678	ENSLACG00000010947	LSM1	98	90.678	Latimeria_chalumnae
ENSSSCG00000039058	LSM1	100	94.737	ENSLOCG00000015149	lsm1	100	94.737	Lepisosteus_oculatus
ENSSSCG00000039058	LSM1	100	98.496	ENSLAFG00000003534	LSM1	100	98.496	Loxodonta_africana
ENSSSCG00000039058	LSM1	100	98.496	ENSMFAG00000032661	LSM1	100	98.496	Macaca_fascicularis
ENSSSCG00000039058	LSM1	100	98.496	ENSMLEG00000034535	LSM1	100	98.496	Mandrillus_leucophaeus
ENSSSCG00000039058	LSM1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
ENSSSCG00000039058	LSM1	100	84.211	ENSMZEG00005010321	lsm1	100	84.211	Maylandia_zebra
ENSSSCG00000039058	LSM1	100	93.233	ENSMGAG00000002125	LSM1	100	93.233	Meleagris_gallopavo
ENSSSCG00000039058	LSM1	100	97.744	ENSMICG00000030726	LSM1	100	97.744	Microcebus_murinus
ENSSSCG00000039058	LSM1	100	99.248	ENSMOCG00000022817	Lsm1	100	99.248	Microtus_ochrogaster
ENSSSCG00000039058	LSM1	100	84.962	ENSMMOG00000015466	lsm1	100	84.962	Mola_mola
ENSSSCG00000039058	LSM1	100	96.241	ENSMODG00000010732	-	100	96.241	Monodelphis_domestica
ENSSSCG00000039058	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSSSCG00000039058	LSM1	100	97.744	MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	Mus_caroli
ENSSSCG00000039058	LSM1	100	97.744	ENSMUSG00000037296	Lsm1	100	97.744	Mus_musculus
ENSSSCG00000039058	LSM1	100	97.744	MGP_PahariEiJ_G0021400	Lsm1	100	97.744	Mus_pahari
ENSSSCG00000039058	LSM1	100	97.744	MGP_SPRETEiJ_G0032049	Lsm1	100	97.744	Mus_spretus
ENSSSCG00000039058	LSM1	100	97.744	ENSMPUG00000009883	LSM1	100	97.744	Mustela_putorius_furo
ENSSSCG00000039058	LSM1	100	97.744	ENSMLUG00000003734	LSM1	100	97.744	Myotis_lucifugus
ENSSSCG00000039058	LSM1	100	97.744	ENSNGAG00000003753	Lsm1	100	97.744	Nannospalax_galili
ENSSSCG00000039058	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSSSCG00000039058	LSM1	100	98.496	ENSNLEG00000029390	LSM1	100	98.496	Nomascus_leucogenys
ENSSSCG00000039058	LSM1	100	96.241	ENSMEUG00000014077	LSM1	100	96.241	Notamacropus_eugenii
ENSSSCG00000039058	LSM1	88	95.726	ENSOPRG00000000333	LSM1	100	95.726	Ochotona_princeps
ENSSSCG00000039058	LSM1	100	98.496	ENSODEG00000004834	LSM1	100	98.496	Octodon_degus
ENSSSCG00000039058	LSM1	100	84.211	ENSONIG00000010782	lsm1	100	84.211	Oreochromis_niloticus
ENSSSCG00000039058	LSM1	100	95.489	ENSOANG00000003256	LSM1	100	95.489	Ornithorhynchus_anatinus
ENSSSCG00000039058	LSM1	100	98.496	ENSOCUG00000015399	LSM1	100	98.496	Oryctolagus_cuniculus
ENSSSCG00000039058	LSM1	100	85.714	ENSORLG00000030288	lsm1	100	85.714	Oryzias_latipes
ENSSSCG00000039058	LSM1	100	85.714	ENSORLG00020003941	lsm1	100	85.714	Oryzias_latipes_hni
ENSSSCG00000039058	LSM1	100	84.211	ENSORLG00020006213	-	86	84.211	Oryzias_latipes_hni
ENSSSCG00000039058	LSM1	100	85.714	ENSORLG00015018350	lsm1	100	85.714	Oryzias_latipes_hsok
ENSSSCG00000039058	LSM1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
ENSSSCG00000039058	LSM1	100	98.496	ENSOGAG00000015161	LSM1	100	98.496	Otolemur_garnettii
ENSSSCG00000039058	LSM1	100	98.496	ENSOARG00000001317	LSM1	100	98.496	Ovis_aries
ENSSSCG00000039058	LSM1	100	98.496	ENSPPAG00000032279	LSM1	100	98.496	Pan_paniscus
ENSSSCG00000039058	LSM1	100	98.496	ENSPPRG00000014172	-	100	98.496	Panthera_pardus
ENSSSCG00000039058	LSM1	100	98.496	ENSPTIG00000010289	LSM1	100	98.496	Panthera_tigris_altaica
ENSSSCG00000039058	LSM1	100	98.496	ENSPTRG00000020169	LSM1	100	98.496	Pan_troglodytes
ENSSSCG00000039058	LSM1	100	98.496	ENSPANG00000008814	LSM1	100	98.496	Papio_anubis
ENSSSCG00000039058	LSM1	100	82.707	ENSPKIG00000019409	LSM1	99	82.707	Paramormyrops_kingsleyae
ENSSSCG00000039058	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSSSCG00000039058	LSM1	98	89.231	ENSPSIG00000012563	LSM1	99	89.231	Pelodiscus_sinensis
ENSSSCG00000039058	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSSSCG00000039058	LSM1	85	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSSSCG00000039058	LSM1	100	94.737	ENSPCIG00000008880	LSM1	100	94.737	Phascolarctos_cinereus
ENSSSCG00000039058	LSM1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSSSCG00000039058	LSM1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSSSCG00000039058	LSM1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSSSCG00000039058	LSM1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSSSCG00000039058	LSM1	100	98.496	ENSPPYG00000018521	LSM1	100	98.496	Pongo_abelii
ENSSSCG00000039058	LSM1	100	98.496	ENSPCOG00000020901	-	100	98.496	Propithecus_coquereli
ENSSSCG00000039058	LSM1	100	98.496	ENSPVAG00000006016	LSM1	100	98.496	Pteropus_vampyrus
ENSSSCG00000039058	LSM1	100	84.211	ENSPNYG00000018067	lsm1	100	84.211	Pundamilia_nyererei
ENSSSCG00000039058	LSM1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSSSCG00000039058	LSM1	100	98.496	ENSRNOG00000015375	Lsm1	100	98.496	Rattus_norvegicus
ENSSSCG00000039058	LSM1	100	98.496	ENSRBIG00000027449	LSM1	100	98.496	Rhinopithecus_bieti
ENSSSCG00000039058	LSM1	100	98.496	ENSRROG00000036074	LSM1	100	98.496	Rhinopithecus_roxellana
ENSSSCG00000039058	LSM1	87	42.149	YJL124C	LSM1	70	42.149	Saccharomyces_cerevisiae
ENSSSCG00000039058	LSM1	100	96.241	ENSSHAG00000017260	LSM1	100	96.241	Sarcophilus_harrisii
ENSSSCG00000039058	LSM1	100	91.729	ENSSFOG00015019528	lsm1	100	91.729	Scleropages_formosus
ENSSSCG00000039058	LSM1	100	84.211	ENSSMAG00000004930	lsm1	100	84.211	Scophthalmus_maximus
ENSSSCG00000039058	LSM1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSSSCG00000039058	LSM1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSSSCG00000039058	LSM1	100	95.489	ENSSPUG00000014878	LSM1	100	95.489	Sphenodon_punctatus
ENSSSCG00000039058	LSM1	100	83.459	ENSSPAG00000020548	lsm1	100	83.459	Stegastes_partitus
ENSSSCG00000039058	LSM1	100	94.737	ENSTGUG00000004793	LSM1	100	94.737	Taeniopygia_guttata
ENSSSCG00000039058	LSM1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSSSCG00000039058	LSM1	100	86.466	ENSTNIG00000004055	lsm1	100	86.466	Tetraodon_nigroviridis
ENSSSCG00000039058	LSM1	88	97.436	ENSTBEG00000015884	LSM1	100	97.436	Tupaia_belangeri
ENSSSCG00000039058	LSM1	100	98.496	ENSTTRG00000004482	LSM1	100	98.496	Tursiops_truncatus
ENSSSCG00000039058	LSM1	100	98.496	ENSUAMG00000004103	LSM1	100	98.496	Ursus_americanus
ENSSSCG00000039058	LSM1	100	98.496	ENSUMAG00000009132	LSM1	100	98.496	Ursus_maritimus
ENSSSCG00000039058	LSM1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSSSCG00000039058	LSM1	100	98.496	ENSVVUG00000020191	LSM1	100	98.496	Vulpes_vulpes
ENSSSCG00000039058	LSM1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSSSCG00000039058	LSM1	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSSSCG00000039058	LSM1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
ENSSSCG00000039058	LSM1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus