EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000039301 (Gene tree)
Gene ID: 100738783
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 87337 bases
Position: chr2:58974167-59061503
Accession: 100738783
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000052892	UPF1_Zn_bind	PF09416.10	9.2e-75	1	1
ENSSSCP00000036535	UPF1_Zn_bind	PF09416.10	1.1e-74	1	1
ENSSSCP00000055353	UPF1_Zn_bind	PF09416.10	1.1e-74	1	1
ENSSSCP00000052892	ResIII	PF04851.15	3.4e-05	1	1
ENSSSCP00000036535	ResIII	PF04851.15	3.8e-05	1	1
ENSSSCP00000055353	ResIII	PF04851.15	3.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000047561	UPF1-202	5864	-	ENSSSCP00000052892	1043 (aa)	-	A0A287B9Y4
ENSSSCT00000043482	UPF1-203	5387	XM_021083469	ENSSSCP00000036535	1116 (aa)	XP_020939128	A0A286ZYJ8
ENSSSCT00000052691	UPF1-201	6477	XM_021083468	ENSSSCP00000055353	1127 (aa)	XP_020939127	A0A287BFP7

Gene Model

Click here to download ENSSSCG00000039301's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039301's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039301	UPF1	100	99.115	ENSG00000005007	UPF1	100	99.115	Homo_sapiens
ENSSSCG00000039301	UPF1	99	94.828	ENSAPOG00000010916	-	100	92.844	Acanthochromis_polyacanthus
ENSSSCG00000039301	UPF1	99	93.314	ENSAPOG00000023773	upf1	100	91.615	Acanthochromis_polyacanthus
ENSSSCG00000039301	UPF1	100	98.407	ENSAMEG00000011474	UPF1	100	98.407	Ailuropoda_melanoleuca
ENSSSCG00000039301	UPF1	98	94.927	ENSACIG00000010985	-	100	95.024	Amphilophus_citrinellus
ENSSSCG00000039301	UPF1	99	93.034	ENSACIG00000019949	upf1	100	91.704	Amphilophus_citrinellus
ENSSSCG00000039301	UPF1	99	92.802	ENSAOCG00000018519	upf1	100	91.608	Amphiprion_ocellaris
ENSSSCG00000039301	UPF1	99	94.732	ENSAOCG00000006352	-	100	92.844	Amphiprion_ocellaris
ENSSSCG00000039301	UPF1	99	94.732	ENSAPEG00000006292	-	100	92.844	Amphiprion_percula
ENSSSCG00000039301	UPF1	99	92.802	ENSAPEG00000016344	upf1	100	91.608	Amphiprion_percula
ENSSSCG00000039301	UPF1	99	91.887	ENSATEG00000017867	upf1	100	91.005	Anabas_testudineus
ENSSSCG00000039301	UPF1	99	94.828	ENSATEG00000016606	-	100	92.934	Anabas_testudineus
ENSSSCG00000039301	UPF1	99	97.911	ENSAPLG00000009175	UPF1	100	98.197	Anas_platyrhynchos
ENSSSCG00000039301	UPF1	99	97.336	ENSANAG00000024107	UPF1	97	96.840	Aotus_nancymaae
ENSSSCG00000039301	UPF1	99	92.844	ENSACLG00000007181	upf1	100	91.436	Astatotilapia_calliptera
ENSSSCG00000039301	UPF1	99	94.444	ENSACLG00000022630	-	100	92.487	Astatotilapia_calliptera
ENSSSCG00000039301	UPF1	99	95.024	ENSAMXG00000042187	upf1	100	93.744	Astyanax_mexicanus
ENSSSCG00000039301	UPF1	100	99.911	ENSBTAG00000020922	UPF1	100	99.911	Bos_taurus
ENSSSCG00000039301	UPF1	87	53.629	WBGene00004880	smg-2	99	48.205	Caenorhabditis_elegans
ENSSSCG00000039301	UPF1	100	99.115	ENSCJAG00000019627	UPF1	100	99.115	Callithrix_jacchus
ENSSSCG00000039301	UPF1	100	99.469	ENSCAFG00000014578	UPF1	100	99.469	Canis_familiaris
ENSSSCG00000039301	UPF1	100	99.464	ENSCAFG00020012347	UPF1	100	99.464	Canis_lupus_dingo
ENSSSCG00000039301	UPF1	100	99.910	ENSCHIG00000011018	UPF1	100	99.910	Capra_hircus
ENSSSCG00000039301	UPF1	99	98.478	ENSTSYG00000008877	UPF1	99	97.685	Carlito_syrichta
ENSSSCG00000039301	UPF1	99	97.907	ENSCAPG00000005758	UPF1	95	98.478	Cavia_aperea
ENSSSCG00000039301	UPF1	99	97.901	ENSCPOG00000025463	UPF1	100	96.460	Cavia_porcellus
ENSSSCG00000039301	UPF1	100	99.106	ENSCCAG00000032175	UPF1	100	99.106	Cebus_capucinus
ENSSSCG00000039301	UPF1	99	98.479	ENSCATG00000040306	UPF1	98	99.525	Cercocebus_atys
ENSSSCG00000039301	UPF1	99	98.478	ENSCLAG00000004037	UPF1	99	99.524	Chinchilla_lanigera
ENSSSCG00000039301	UPF1	100	99.017	ENSCSAG00000005276	UPF1	100	99.017	Chlorocebus_sabaeus
ENSSSCG00000039301	UPF1	99	98.469	ENSCPBG00000012513	UPF1	100	97.319	Chrysemys_picta_bellii
ENSSSCG00000039301	UPF1	73	83.681	ENSCING00000021399	-	99	78.416	Ciona_intestinalis
ENSSSCG00000039301	UPF1	99	74.187	ENSCSAVG00000006533	-	99	72.099	Ciona_savignyi
ENSSSCG00000039301	UPF1	99	98.668	ENSCANG00000029819	UPF1	99	98.690	Colobus_angolensis_palliatus
ENSSSCG00000039301	UPF1	100	98.566	ENSCGRG00001021067	Upf1	100	98.566	Cricetulus_griseus_chok1gshd
ENSSSCG00000039301	UPF1	99	98.097	ENSCGRG00000013480	Upf1	99	98.127	Cricetulus_griseus_crigri
ENSSSCG00000039301	UPF1	99	87.835	ENSCSEG00000017239	upf1	100	86.494	Cynoglossus_semilaevis
ENSSSCG00000039301	UPF1	99	94.823	ENSCSEG00000016159	-	100	92.748	Cynoglossus_semilaevis
ENSSSCG00000039301	UPF1	99	94.349	ENSCVAG00000010561	upf1	100	92.487	Cyprinodon_variegatus
ENSSSCG00000039301	UPF1	99	94.833	ENSDARG00000016302	upf1	100	93.566	Danio_rerio
ENSSSCG00000039301	UPF1	99	95.627	ENSDORG00000009984	Upf1	95	96.673	Dipodomys_ordii
ENSSSCG00000039301	UPF1	84	74.548	FBgn0030354	Upf1	84	67.562	Drosophila_melanogaster
ENSSSCG00000039301	UPF1	52	90.203	ENSEBUG00000010069	upf1	96	85.691	Eptatretus_burgeri
ENSSSCG00000039301	UPF1	100	99.552	ENSEASG00005006549	UPF1	100	99.552	Equus_asinus_asinus
ENSSSCG00000039301	UPF1	100	99.552	ENSECAG00000010639	UPF1	100	99.552	Equus_caballus
ENSSSCG00000039301	UPF1	99	92.381	ENSELUG00000020917	upf1	100	90.925	Esox_lucius
ENSSSCG00000039301	UPF1	99	93.720	ENSELUG00000012916	-	100	91.829	Esox_lucius
ENSSSCG00000039301	UPF1	100	99.381	ENSFCAG00000009757	UPF1	100	99.381	Felis_catus
ENSSSCG00000039301	UPF1	99	98.375	ENSFALG00000009312	UPF1	99	97.018	Ficedula_albicollis
ENSSSCG00000039301	UPF1	99	98.382	ENSFDAG00000014816	UPF1	99	99.429	Fukomys_damarensis
ENSSSCG00000039301	UPF1	99	90.485	ENSFHEG00000006428	upf1	100	88.642	Fundulus_heteroclitus
ENSSSCG00000039301	UPF1	91	94.750	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSSSCG00000039301	UPF1	99	93.175	ENSGMOG00000007541	upf1	100	91.940	Gadus_morhua
ENSSSCG00000039301	UPF1	99	98.944	ENSGALG00000003220	UPF1	100	97.676	Gallus_gallus
ENSSSCG00000039301	UPF1	66	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSSSCG00000039301	UPF1	99	94.247	ENSGAFG00000004831	upf1	100	92.301	Gambusia_affinis
ENSSSCG00000039301	UPF1	99	98.848	ENSGAGG00000022217	UPF1	100	97.493	Gopherus_agassizii
ENSSSCG00000039301	UPF1	99	99.712	ENSGGOG00000002608	UPF1	99	99.712	Gorilla_gorilla
ENSSSCG00000039301	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSSSCG00000039301	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSSCG00000039301	UPF1	100	98.584	ENSHGLG00000010900	UPF1	100	98.584	Heterocephalus_glaber_female
ENSSSCG00000039301	UPF1	99	96.480	ENSHGLG00100005904	UPF1	99	95.400	Heterocephalus_glaber_male
ENSSSCG00000039301	UPF1	99	93.672	ENSHCOG00000008918	upf1	100	93.907	Hippocampus_comes
ENSSSCG00000039301	UPF1	99	95.502	ENSIPUG00000005108	UPF1	100	94.102	Ictalurus_punctatus
ENSSSCG00000039301	UPF1	100	99.024	ENSSTOG00000009196	UPF1	100	99.024	Ictidomys_tridecemlineatus
ENSSSCG00000039301	UPF1	100	98.137	ENSJJAG00000023151	Upf1	100	98.137	Jaculus_jaculus
ENSSSCG00000039301	UPF1	99	94.732	ENSKMAG00000004962	upf1	100	92.755	Kryptolebias_marmoratus
ENSSSCG00000039301	UPF1	99	94.641	ENSLBEG00000027848	-	100	92.761	Labrus_bergylta
ENSSSCG00000039301	UPF1	99	91.493	ENSLBEG00000014862	upf1	100	90.813	Labrus_bergylta
ENSSSCG00000039301	UPF1	67	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSSSCG00000039301	UPF1	99	97.315	ENSLOCG00000002072	upf1	100	95.345	Lepisosteus_oculatus
ENSSSCG00000039301	UPF1	100	98.670	ENSLAFG00000014963	UPF1	100	98.670	Loxodonta_africana
ENSSSCG00000039301	UPF1	100	99.115	ENSMFAG00000037748	UPF1	100	99.115	Macaca_fascicularis
ENSSSCG00000039301	UPF1	100	99.115	ENSMMUG00000023286	UPF1	100	99.115	Macaca_mulatta
ENSSSCG00000039301	UPF1	100	99.115	ENSMNEG00000000046	UPF1	100	99.115	Macaca_nemestrina
ENSSSCG00000039301	UPF1	99	98.668	ENSMLEG00000028404	UPF1	99	99.715	Mandrillus_leucophaeus
ENSSSCG00000039301	UPF1	99	93.876	ENSMAMG00000006231	-	100	92.404	Mastacembelus_armatus
ENSSSCG00000039301	UPF1	99	91.604	ENSMAMG00000006229	upf1	100	90.917	Mastacembelus_armatus
ENSSSCG00000039301	UPF1	99	94.444	ENSMZEG00005016386	-	100	92.487	Maylandia_zebra
ENSSSCG00000039301	UPF1	99	91.706	ENSMZEG00005003489	upf1	100	91.231	Maylandia_zebra
ENSSSCG00000039301	UPF1	99	97.529	ENSMGAG00000004745	UPF1	100	97.814	Meleagris_gallopavo
ENSSSCG00000039301	UPF1	99	98.097	ENSMAUG00000011398	Upf1	97	97.403	Mesocricetus_auratus
ENSSSCG00000039301	UPF1	100	98.928	ENSMICG00000001659	UPF1	100	98.928	Microcebus_murinus
ENSSSCG00000039301	UPF1	100	98.492	ENSMOCG00000005699	Upf1	100	98.492	Microtus_ochrogaster
ENSSSCG00000039301	UPF1	99	92.433	ENSMMOG00000007537	-	99	92.536	Mola_mola
ENSSSCG00000039301	UPF1	99	93.057	ENSMMOG00000007881	upf1	100	91.316	Mola_mola
ENSSSCG00000039301	UPF1	100	98.058	ENSMODG00000003689	UPF1	100	98.058	Monodelphis_domestica
ENSSSCG00000039301	UPF1	99	92.802	ENSMALG00000000144	upf1	100	91.308	Monopterus_albus
ENSSSCG00000039301	UPF1	99	93.518	ENSMALG00000018100	-	100	91.630	Monopterus_albus
ENSSSCG00000039301	UPF1	100	98.492	MGP_CAROLIEiJ_G0031142	Upf1	100	98.492	Mus_caroli
ENSSSCG00000039301	UPF1	100	98.492	ENSMUSG00000058301	Upf1	100	98.492	Mus_musculus
ENSSSCG00000039301	UPF1	100	98.492	MGP_PahariEiJ_G0021607	Upf1	100	98.492	Mus_pahari
ENSSSCG00000039301	UPF1	100	98.492	MGP_SPRETEiJ_G0032260	Upf1	100	98.492	Mus_spretus
ENSSSCG00000039301	UPF1	100	99.464	ENSMPUG00000015516	UPF1	100	99.464	Mustela_putorius_furo
ENSSSCG00000039301	UPF1	99	99.712	ENSMLUG00000012122	UPF1	99	99.103	Myotis_lucifugus
ENSSSCG00000039301	UPF1	100	98.493	ENSNGAG00000024107	Upf1	100	98.493	Nannospalax_galili
ENSSSCG00000039301	UPF1	99	91.031	ENSNBRG00000000670	upf1	100	89.741	Neolamprologus_brichardi
ENSSSCG00000039301	UPF1	98	93.878	ENSNBRG00000022069	-	100	93.878	Neolamprologus_brichardi
ENSSSCG00000039301	UPF1	99	92.864	ENSNLEG00000006062	UPF1	99	93.911	Nomascus_leucogenys
ENSSSCG00000039301	UPF1	83	94.314	ENSMEUG00000014146	-	83	94.314	Notamacropus_eugenii
ENSSSCG00000039301	UPF1	99	91.731	ENSOPRG00000014018	UPF1	99	91.731	Ochotona_princeps
ENSSSCG00000039301	UPF1	100	97.604	ENSODEG00000012426	UPF1	100	97.604	Octodon_degus
ENSSSCG00000039301	UPF1	99	91.989	ENSONIG00000010452	upf1	100	91.497	Oreochromis_niloticus
ENSSSCG00000039301	UPF1	99	94.540	ENSONIG00000012729	-	100	92.576	Oreochromis_niloticus
ENSSSCG00000039301	UPF1	100	97.520	ENSOANG00000004568	UPF1	100	97.520	Ornithorhynchus_anatinus
ENSSSCG00000039301	UPF1	99	94.540	ENSORLG00000008453	upf1	100	92.755	Oryzias_latipes
ENSSSCG00000039301	UPF1	99	94.540	ENSORLG00020014758	upf1	100	92.672	Oryzias_latipes_hni
ENSSSCG00000039301	UPF1	99	94.540	ENSORLG00015010165	upf1	100	92.672	Oryzias_latipes_hsok
ENSSSCG00000039301	UPF1	99	94.636	ENSOMEG00000003665	upf1	100	92.755	Oryzias_melastigma
ENSSSCG00000039301	UPF1	100	99.196	ENSOGAG00000012866	UPF1	100	99.196	Otolemur_garnettii
ENSSSCG00000039301	UPF1	96	98.328	ENSOARG00000010739	UPF1	100	97.606	Ovis_aries
ENSSSCG00000039301	UPF1	99	98.668	ENSPPAG00000043884	UPF1	99	97.516	Pan_paniscus
ENSSSCG00000039301	UPF1	100	99.381	ENSPPRG00000023470	UPF1	100	99.381	Panthera_pardus
ENSSSCG00000039301	UPF1	100	97.699	ENSPTIG00000010159	UPF1	100	97.699	Panthera_tigris_altaica
ENSSSCG00000039301	UPF1	100	99.115	ENSPTRG00000010721	UPF1	100	99.115	Pan_troglodytes
ENSSSCG00000039301	UPF1	100	99.115	ENSPANG00000008847	UPF1	100	99.115	Papio_anubis
ENSSSCG00000039301	UPF1	94	94.393	ENSPKIG00000006069	upf1	99	92.512	Paramormyrops_kingsleyae
ENSSSCG00000039301	UPF1	73	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSSSCG00000039301	UPF1	99	91.117	ENSPMGG00000017327	upf1	100	89.492	Periophthalmus_magnuspinnatus
ENSSSCG00000039301	UPF1	100	98.580	ENSPEMG00000001085	Upf1	100	98.580	Peromyscus_maniculatus_bairdii
ENSSSCG00000039301	UPF1	99	89.303	ENSPMAG00000001206	upf1	100	86.844	Petromyzon_marinus
ENSSSCG00000039301	UPF1	100	98.479	ENSPCIG00000006156	UPF1	100	98.479	Phascolarctos_cinereus
ENSSSCG00000039301	UPF1	99	94.343	ENSPLAG00000016232	-	100	92.390	Poecilia_latipinna
ENSSSCG00000039301	UPF1	99	91.548	ENSPLAG00000018155	-	100	89.530	Poecilia_latipinna
ENSSSCG00000039301	UPF1	99	94.253	ENSPMEG00000016319	-	100	92.308	Poecilia_mexicana
ENSSSCG00000039301	UPF1	99	92.153	ENSPMEG00000011443	-	100	90.080	Poecilia_mexicana
ENSSSCG00000039301	UPF1	99	94.151	ENSPREG00000011247	-	100	92.211	Poecilia_reticulata
ENSSSCG00000039301	UPF1	99	92.023	ENSPREG00000009940	upf1	100	89.973	Poecilia_reticulata
ENSSSCG00000039301	UPF1	100	94.159	ENSPPYG00000009752	UPF1	100	94.159	Pongo_abelii
ENSSSCG00000039301	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSSSCG00000039301	UPF1	100	99.115	ENSPCOG00000023813	UPF1	100	99.115	Propithecus_coquereli
ENSSSCG00000039301	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSSCG00000039301	UPF1	99	94.444	ENSPNYG00000016731	-	100	92.487	Pundamilia_nyererei
ENSSSCG00000039301	UPF1	99	91.706	ENSPNYG00000003694	upf1	100	91.231	Pundamilia_nyererei
ENSSSCG00000039301	UPF1	99	95.024	ENSPNAG00000025614	upf1	100	93.744	Pygocentrus_nattereri
ENSSSCG00000039301	UPF1	100	98.492	ENSRNOG00000020134	Upf1	100	98.492	Rattus_norvegicus
ENSSSCG00000039301	UPF1	99	96.289	ENSRBIG00000013894	UPF1	98	99.562	Rhinopithecus_bieti
ENSSSCG00000039301	UPF1	99	98.668	ENSRROG00000040935	UPF1	99	98.690	Rhinopithecus_roxellana
ENSSSCG00000039301	UPF1	78	57.038	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSSSCG00000039301	UPF1	99	98.571	ENSSBOG00000023632	UPF1	99	96.895	Saimiri_boliviensis_boliviensis
ENSSSCG00000039301	UPF1	99	97.911	ENSSHAG00000010499	UPF1	100	98.955	Sarcophilus_harrisii
ENSSSCG00000039301	UPF1	100	97.414	ENSSFOG00015021095	upf1	99	97.414	Scleropages_formosus
ENSSSCG00000039301	UPF1	99	91.115	ENSSMAG00000005055	upf1	100	90.115	Scophthalmus_maximus
ENSSSCG00000039301	UPF1	99	94.545	ENSSMAG00000021018	-	100	92.672	Scophthalmus_maximus
ENSSSCG00000039301	UPF1	99	91.887	ENSSDUG00000013320	upf1	100	91.182	Seriola_dumerili
ENSSSCG00000039301	UPF1	99	94.833	ENSSDUG00000009629	-	100	92.940	Seriola_dumerili
ENSSSCG00000039301	UPF1	99	94.833	ENSSLDG00000006878	-	100	92.940	Seriola_lalandi_dorsalis
ENSSSCG00000039301	UPF1	99	92.762	ENSSLDG00000020868	upf1	100	91.474	Seriola_lalandi_dorsalis
ENSSSCG00000039301	UPF1	99	98.752	ENSSPUG00000010538	UPF1	100	97.140	Sphenodon_punctatus
ENSSSCG00000039301	UPF1	99	91.083	ENSSPAG00000000003	upf1	100	89.464	Stegastes_partitus
ENSSSCG00000039301	UPF1	99	94.823	ENSSPAG00000011521	-	100	92.838	Stegastes_partitus
ENSSSCG00000039301	UPF1	83	90.213	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSSSCG00000039301	UPF1	99	93.672	ENSTRUG00000005131	-	100	91.764	Takifugu_rubripes
ENSSSCG00000039301	UPF1	99	92.898	ENSTRUG00000000150	upf1	100	90.771	Takifugu_rubripes
ENSSSCG00000039301	UPF1	100	95.968	ENSTTRG00000011544	UPF1	100	95.968	Tursiops_truncatus
ENSSSCG00000039301	UPF1	100	99.374	ENSUAMG00000007093	UPF1	100	99.374	Ursus_americanus
ENSSSCG00000039301	UPF1	100	99.808	ENSUMAG00000006652	UPF1	99	99.896	Ursus_maritimus
ENSSSCG00000039301	UPF1	100	99.464	ENSVVUG00000007797	UPF1	100	99.464	Vulpes_vulpes
ENSSSCG00000039301	UPF1	100	83.459	ENSXETG00000013602	upf1	100	81.163	Xenopus_tropicalis
ENSSSCG00000039301	UPF1	96	91.750	ENSXCOG00000015275	-	96	89.815	Xiphophorus_couchianus
ENSSSCG00000039301	UPF1	99	94.762	ENSXCOG00000005764	-	100	94.762	Xiphophorus_couchianus
ENSSSCG00000039301	UPF1	99	91.946	ENSXMAG00000001703	-	100	90.063	Xiphophorus_maculatus
ENSSSCG00000039301	UPF1	99	94.061	ENSXMAG00000002540	-	100	92.129	Xiphophorus_maculatus