EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000039331 (Gene tree)
Gene ID: 100515656
Gene Symbol: -
Alias: -
Full Name: C1D nuclear receptor corepressor
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 17191 bases
Position: chr3:74136608-74153798
Accession: 100515656
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000042677	Sas10_Utp3	PF04000.15	2.3e-17	1	1
ENSSSCP00000057254	Sas10_Utp3	PF04000.15	2.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000058895	-	2643	XM_021087427	ENSSSCP00000042677	141 (aa)	XP_020943086	A0A287BKX0
ENSSSCT00000040202	-	2365	XM_003125076	ENSSSCP00000057254	141 (aa)	XP_003125124	A0A287BKX0

Gene Model

Click here to download ENSSSCG00000039331's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039331's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000039331	-	100	68.794	ENSSSCG00000035701	-	100	68.794

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039331	-	100	97.163	ENSG00000197223	C1D	100	97.163	Homo_sapiens
ENSSSCG00000039331	-	99	63.121	ENSAPOG00000005466	c1d	95	63.121	Acanthochromis_polyacanthus
ENSSSCG00000039331	-	99	98.561	ENSAMEG00000004859	C1D	95	98.561	Ailuropoda_melanoleuca
ENSSSCG00000039331	-	94	65.152	ENSACIG00000012684	c1d	86	65.152	Amphilophus_citrinellus
ENSSSCG00000039331	-	97	60.584	ENSAOCG00000020354	c1d	93	60.584	Amphiprion_ocellaris
ENSSSCG00000039331	-	94	64.662	ENSAPEG00000001403	c1d	86	64.662	Amphiprion_percula
ENSSSCG00000039331	-	96	64.234	ENSATEG00000012922	c1d	88	64.234	Anabas_testudineus
ENSSSCG00000039331	-	97	75.714	ENSAPLG00000009320	C1D	97	75.714	Anas_platyrhynchos
ENSSSCG00000039331	-	87	80.328	ENSACAG00000001337	C1D	100	80.328	Anolis_carolinensis
ENSSSCG00000039331	-	100	97.163	ENSANAG00000035972	-	100	97.163	Aotus_nancymaae
ENSSSCG00000039331	-	100	93.617	ENSANAG00000005773	-	100	93.617	Aotus_nancymaae
ENSSSCG00000039331	-	87	66.393	ENSACLG00000026206	c1d	93	61.429	Astatotilapia_calliptera
ENSSSCG00000039331	-	100	62.411	ENSAMXG00000043212	c1d	93	62.411	Astyanax_mexicanus
ENSSSCG00000039331	-	100	98.582	ENSBTAG00000049002	C1D	100	98.582	Bos_taurus
ENSSSCG00000039331	-	100	97.872	ENSCJAG00000006589	C1D	93	97.163	Callithrix_jacchus
ENSSSCG00000039331	-	83	88.034	ENSCJAG00000044668	-	91	88.034	Callithrix_jacchus
ENSSSCG00000039331	-	100	97.163	ENSCAFG00000030099	C1D	100	97.163	Canis_familiaris
ENSSSCG00000039331	-	100	97.163	ENSCAFG00020026997	C1D	100	97.163	Canis_lupus_dingo
ENSSSCG00000039331	-	100	97.872	ENSCHIG00000025729	C1D	100	97.872	Capra_hircus
ENSSSCG00000039331	-	100	98.582	ENSTSYG00000035739	-	100	98.582	Carlito_syrichta
ENSSSCG00000039331	-	99	87.857	ENSTSYG00000026573	-	85	87.857	Carlito_syrichta
ENSSSCG00000039331	-	100	73.759	ENSCAPG00000011523	-	100	73.759	Cavia_aperea
ENSSSCG00000039331	-	99	94.286	ENSCPOG00000037986	-	99	94.286	Cavia_porcellus
ENSSSCG00000039331	-	100	74.468	ENSCPOG00000020112	-	100	74.468	Cavia_porcellus
ENSSSCG00000039331	-	100	97.872	ENSCCAG00000030405	-	100	97.872	Cebus_capucinus
ENSSSCG00000039331	-	100	97.163	ENSCATG00000045336	C1D	100	97.163	Cercocebus_atys
ENSSSCG00000039331	-	100	94.326	ENSCATG00000043348	-	100	94.326	Cercocebus_atys
ENSSSCG00000039331	-	100	95.745	ENSCLAG00000011883	C1D	100	95.745	Chinchilla_lanigera
ENSSSCG00000039331	-	100	95.745	ENSCSAG00000014811	C1D	100	95.745	Chlorocebus_sabaeus
ENSSSCG00000039331	-	100	98.582	ENSCHOG00000006719	C1D	79	98.582	Choloepus_hoffmanni
ENSSSCG00000039331	-	94	79.699	ENSCPBG00000014451	C1D	90	79.699	Chrysemys_picta_bellii
ENSSSCG00000039331	-	86	42.149	ENSCING00000020906	-	64	41.803	Ciona_intestinalis
ENSSSCG00000039331	-	83	47.009	ENSCSAVG00000000150	-	67	47.009	Ciona_savignyi
ENSSSCG00000039331	-	100	96.454	ENSCANG00000035564	C1D	100	96.454	Colobus_angolensis_palliatus
ENSSSCG00000039331	-	87	83.740	ENSCANG00000036599	-	100	83.740	Colobus_angolensis_palliatus
ENSSSCG00000039331	-	100	90.780	ENSCGRG00001023376	C1d	100	90.780	Cricetulus_griseus_chok1gshd
ENSSSCG00000039331	-	100	90.780	ENSCGRG00000010245	C1d	100	90.780	Cricetulus_griseus_crigri
ENSSSCG00000039331	-	92	61.538	ENSCSEG00000000587	c1d	91	61.538	Cynoglossus_semilaevis
ENSSSCG00000039331	-	96	61.765	ENSCVAG00000004603	c1d	87	63.359	Cyprinodon_variegatus
ENSSSCG00000039331	-	87	65.041	ENSDARG00000021112	c1d	95	60.284	Danio_rerio
ENSSSCG00000039331	-	100	90.071	ENSDNOG00000046068	-	100	90.071	Dasypus_novemcinctus
ENSSSCG00000039331	-	100	94.326	ENSDORG00000003300	C1d	100	94.326	Dipodomys_ordii
ENSSSCG00000039331	-	67	92.632	ENSETEG00000014857	C1D	100	92.632	Echinops_telfairi
ENSSSCG00000039331	-	87	56.557	ENSEBUG00000006874	c1d	77	56.557	Eptatretus_burgeri
ENSSSCG00000039331	-	100	98.582	ENSEASG00005007307	C1D	92	98.582	Equus_asinus_asinus
ENSSSCG00000039331	-	99	97.842	ENSECAG00000002187	C1D	99	98.551	Equus_caballus
ENSSSCG00000039331	-	100	63.830	ENSELUG00000014823	c1d	96	63.830	Esox_lucius
ENSSSCG00000039331	-	100	99.291	ENSFCAG00000028933	C1D	100	99.291	Felis_catus
ENSSSCG00000039331	-	93	80.451	ENSFALG00000013640	C1D	81	80.451	Ficedula_albicollis
ENSSSCG00000039331	-	100	96.454	ENSFDAG00000010462	-	100	96.454	Fukomys_damarensis
ENSSSCG00000039331	-	100	76.761	ENSFDAG00000014175	-	100	76.761	Fukomys_damarensis
ENSSSCG00000039331	-	99	64.286	ENSFHEG00000010545	c1d	97	64.286	Fundulus_heteroclitus
ENSSSCG00000039331	-	83	64.957	ENSGMOG00000013911	-	93	64.957	Gadus_morhua
ENSSSCG00000039331	-	90	81.250	ENSGALG00000008765	C1D	89	81.250	Gallus_gallus
ENSSSCG00000039331	-	92	65.385	ENSGAFG00000012578	c1d	83	65.385	Gambusia_affinis
ENSSSCG00000039331	-	89	63.200	ENSGACG00000011981	c1d	98	63.200	Gasterosteus_aculeatus
ENSSSCG00000039331	-	86	81.818	ENSGAGG00000013383	C1D	90	76.692	Gopherus_agassizii
ENSSSCG00000039331	-	100	98.582	ENSGGOG00000025982	-	78	98.582	Gorilla_gorilla
ENSSSCG00000039331	-	100	95.745	ENSGGOG00000022296	-	100	95.745	Gorilla_gorilla
ENSSSCG00000039331	-	100	89.362	ENSGGOG00000025808	-	80	89.362	Gorilla_gorilla
ENSSSCG00000039331	-	82	67.241	ENSHBUG00000018531	c1d	76	64.567	Haplochromis_burtoni
ENSSSCG00000039331	-	92	96.154	ENSHGLG00000012332	-	99	94.286	Heterocephalus_glaber_female
ENSSSCG00000039331	-	100	84.397	ENSHGLG00000021219	-	100	84.397	Heterocephalus_glaber_female
ENSSSCG00000039331	-	100	85.106	ENSHGLG00100019951	-	100	85.106	Heterocephalus_glaber_male
ENSSSCG00000039331	-	100	92.199	ENSHGLG00100000221	-	100	92.199	Heterocephalus_glaber_male
ENSSSCG00000039331	-	95	61.194	ENSHCOG00000014568	C1D	91	61.194	Hippocampus_comes
ENSSSCG00000039331	-	95	61.194	ENSHCOG00000014589	c1d	91	61.194	Hippocampus_comes
ENSSSCG00000039331	-	92	60.150	ENSIPUG00000018661	c1d	92	60.150	Ictalurus_punctatus
ENSSSCG00000039331	-	100	97.163	ENSSTOG00000012346	C1D	100	97.163	Ictidomys_tridecemlineatus
ENSSSCG00000039331	-	98	82.609	ENSJJAG00000005044	-	100	82.609	Jaculus_jaculus
ENSSSCG00000039331	-	98	76.087	ENSJJAG00000016086	-	100	76.087	Jaculus_jaculus
ENSSSCG00000039331	-	89	82.308	ENSJJAG00000023186	-	99	82.308	Jaculus_jaculus
ENSSSCG00000039331	-	98	84.058	ENSJJAG00000009540	-	100	84.058	Jaculus_jaculus
ENSSSCG00000039331	-	96	65.441	ENSKMAG00000015077	c1d	88	65.441	Kryptolebias_marmoratus
ENSSSCG00000039331	-	95	64.925	ENSLBEG00000008351	c1d	85	64.925	Labrus_bergylta
ENSSSCG00000039331	-	95	73.881	ENSLACG00000007516	C1D	83	78.226	Latimeria_chalumnae
ENSSSCG00000039331	-	88	71.200	ENSLOCG00000016024	c1d	85	71.200	Lepisosteus_oculatus
ENSSSCG00000039331	-	100	96.454	ENSLAFG00000002083	C1D	100	96.454	Loxodonta_africana
ENSSSCG00000039331	-	100	97.163	ENSMFAG00000034261	C1D	100	97.163	Macaca_fascicularis
ENSSSCG00000039331	-	100	93.617	ENSMFAG00000034034	-	100	93.617	Macaca_fascicularis
ENSSSCG00000039331	-	100	95.745	ENSMFAG00000028681	-	100	95.745	Macaca_fascicularis
ENSSSCG00000039331	-	100	92.908	ENSMMUG00000043184	-	100	92.908	Macaca_mulatta
ENSSSCG00000039331	-	98	97.826	ENSMMUG00000041557	C1D	99	97.826	Macaca_mulatta
ENSSSCG00000039331	-	100	95.035	ENSMMUG00000017209	-	100	95.035	Macaca_mulatta
ENSSSCG00000039331	-	100	92.908	ENSMNEG00000020626	-	100	92.908	Macaca_nemestrina
ENSSSCG00000039331	-	100	97.163	ENSMNEG00000040612	C1D	100	97.163	Macaca_nemestrina
ENSSSCG00000039331	-	100	94.326	ENSMLEG00000028412	-	100	94.326	Mandrillus_leucophaeus
ENSSSCG00000039331	-	100	97.163	ENSMLEG00000027619	C1D	100	97.163	Mandrillus_leucophaeus
ENSSSCG00000039331	-	91	65.625	ENSMAMG00000022156	c1d	90	65.468	Mastacembelus_armatus
ENSSSCG00000039331	-	82	67.241	ENSMZEG00005027343	c1d	92	61.940	Maylandia_zebra
ENSSSCG00000039331	-	99	76.429	ENSMGAG00000004517	C1D	99	76.429	Meleagris_gallopavo
ENSSSCG00000039331	-	100	90.071	ENSMAUG00000008974	C1d	100	90.071	Mesocricetus_auratus
ENSSSCG00000039331	-	100	97.163	ENSMICG00000032141	C1D	100	97.163	Microcebus_murinus
ENSSSCG00000039331	-	100	90.780	ENSMOCG00000010860	C1d	100	90.780	Microtus_ochrogaster
ENSSSCG00000039331	-	94	65.909	ENSMMOG00000007332	c1d	85	65.909	Mola_mola
ENSSSCG00000039331	-	99	80.851	ENSMODG00000003561	C1D	99	80.851	Monodelphis_domestica
ENSSSCG00000039331	-	94	63.636	ENSMALG00000020864	c1d	95	64.800	Monopterus_albus
ENSSSCG00000039331	-	100	89.362	MGP_CAROLIEiJ_G0016110	C1d	100	91.525	Mus_caroli
ENSSSCG00000039331	-	100	89.362	ENSMUSG00000000581	C1d	100	91.525	Mus_musculus
ENSSSCG00000039331	-	100	90.071	MGP_PahariEiJ_G0016781	C1d	100	92.373	Mus_pahari
ENSSSCG00000039331	-	100	89.362	MGP_SPRETEiJ_G0016952	C1d	100	91.525	Mus_spretus
ENSSSCG00000039331	-	100	98.582	ENSMPUG00000006224	C1D	100	98.582	Mustela_putorius_furo
ENSSSCG00000039331	-	99	92.143	ENSMLUG00000024947	-	99	92.143	Myotis_lucifugus
ENSSSCG00000039331	-	99	90.714	ENSMLUG00000029990	-	99	90.714	Myotis_lucifugus
ENSSSCG00000039331	-	99	94.286	ENSMLUG00000010791	-	99	94.286	Myotis_lucifugus
ENSSSCG00000039331	-	100	89.362	ENSNGAG00000011872	-	100	89.362	Nannospalax_galili
ENSSSCG00000039331	-	100	81.560	ENSNGAG00000016675	-	100	81.560	Nannospalax_galili
ENSSSCG00000039331	-	89	81.746	ENSNGAG00000012482	-	100	81.746	Nannospalax_galili
ENSSSCG00000039331	-	82	66.379	ENSNBRG00000010704	c1d	92	61.194	Neolamprologus_brichardi
ENSSSCG00000039331	-	100	96.454	ENSNLEG00000032919	-	78	96.454	Nomascus_leucogenys
ENSSSCG00000039331	-	100	95.745	ENSOPRG00000009586	C1D	100	95.745	Ochotona_princeps
ENSSSCG00000039331	-	99	96.429	ENSODEG00000011242	-	99	96.429	Octodon_degus
ENSSSCG00000039331	-	100	85.816	ENSODEG00000018525	-	100	85.816	Octodon_degus
ENSSSCG00000039331	-	98	96.377	ENSODEG00000018885	-	99	96.377	Octodon_degus
ENSSSCG00000039331	-	87	66.667	ENSONIG00000001233	c1d	89	64.179	Oreochromis_niloticus
ENSSSCG00000039331	-	78	86.364	ENSOANG00000008385	C1D	99	86.364	Ornithorhynchus_anatinus
ENSSSCG00000039331	-	100	94.326	ENSOCUG00000009771	-	100	94.326	Oryctolagus_cuniculus
ENSSSCG00000039331	-	100	94.326	ENSOCUG00000025587	-	100	94.326	Oryctolagus_cuniculus
ENSSSCG00000039331	-	94	66.667	ENSORLG00000021968	c1d	83	66.667	Oryzias_latipes
ENSSSCG00000039331	-	94	66.667	ENSORLG00020000507	c1d	84	66.667	Oryzias_latipes_hni
ENSSSCG00000039331	-	89	68.000	ENSORLG00015004594	c1d	80	68.000	Oryzias_latipes_hsok
ENSSSCG00000039331	-	94	66.667	ENSOMEG00000004672	c1d	85	66.667	Oryzias_melastigma
ENSSSCG00000039331	-	100	96.454	ENSOGAG00000027934	-	100	96.454	Otolemur_garnettii
ENSSSCG00000039331	-	100	97.872	ENSOARG00000019931	C1D	99	97.872	Ovis_aries
ENSSSCG00000039331	-	100	90.071	ENSPPAG00000040091	-	80	90.071	Pan_paniscus
ENSSSCG00000039331	-	100	97.872	ENSPPAG00000037847	-	100	97.872	Pan_paniscus
ENSSSCG00000039331	-	100	98.582	ENSPPRG00000017045	-	100	98.582	Panthera_pardus
ENSSSCG00000039331	-	100	66.667	ENSPPRG00000022830	-	100	66.667	Panthera_pardus
ENSSSCG00000039331	-	100	99.291	ENSPTIG00000009414	C1D	100	99.291	Panthera_tigris_altaica
ENSSSCG00000039331	-	100	97.872	ENSPTRG00000023558	C1D	100	97.872	Pan_troglodytes
ENSSSCG00000039331	-	100	93.617	ENSPANG00000000501	-	100	93.617	Papio_anubis
ENSSSCG00000039331	-	100	97.163	ENSPANG00000002886	C1D	78	97.163	Papio_anubis
ENSSSCG00000039331	-	99	60.284	ENSPKIG00000004877	c1d	95	60.284	Paramormyrops_kingsleyae
ENSSSCG00000039331	-	94	81.955	ENSPSIG00000010015	C1D	92	81.955	Pelodiscus_sinensis
ENSSSCG00000039331	-	91	63.566	ENSPMGG00000009326	c1d	85	62.879	Periophthalmus_magnuspinnatus
ENSSSCG00000039331	-	100	75.887	ENSPCIG00000006831	-	98	75.887	Phascolarctos_cinereus
ENSSSCG00000039331	-	99	82.270	ENSPCIG00000018629	-	99	82.270	Phascolarctos_cinereus
ENSSSCG00000039331	-	96	65.441	ENSPFOG00000003686	c1d	88	65.441	Poecilia_formosa
ENSSSCG00000039331	-	96	65.441	ENSPLAG00000000228	c1d	96	65.441	Poecilia_latipinna
ENSSSCG00000039331	-	96	65.441	ENSPMEG00000023213	c1d	88	65.441	Poecilia_mexicana
ENSSSCG00000039331	-	99	64.748	ENSPREG00000000742	c1d	98	64.748	Poecilia_reticulata
ENSSSCG00000039331	-	100	90.780	ENSPPYG00000002294	-	100	90.780	Pongo_abelii
ENSSSCG00000039331	-	100	97.872	ENSPPYG00000012354	C1D	77	97.872	Pongo_abelii
ENSSSCG00000039331	-	100	85.106	ENSPCAG00000010088	C1D	79	85.106	Procavia_capensis
ENSSSCG00000039331	-	100	97.163	ENSPCOG00000016112	C1D	100	97.163	Propithecus_coquereli
ENSSSCG00000039331	-	100	97.872	ENSPVAG00000012692	C1D	79	97.872	Pteropus_vampyrus
ENSSSCG00000039331	-	82	67.241	ENSPNYG00000008789	c1d	92	61.940	Pundamilia_nyererei
ENSSSCG00000039331	-	99	62.937	ENSPNAG00000004219	c1d	98	62.937	Pygocentrus_nattereri
ENSSSCG00000039331	-	100	90.780	ENSRNOG00000005982	C1d	100	90.780	Rattus_norvegicus
ENSSSCG00000039331	-	100	92.908	ENSRBIG00000026211	-	100	92.908	Rhinopithecus_bieti
ENSSSCG00000039331	-	100	92.908	ENSRROG00000005944	-	100	92.908	Rhinopithecus_roxellana
ENSSSCG00000039331	-	100	97.163	ENSRROG00000029013	C1D	100	97.163	Rhinopithecus_roxellana
ENSSSCG00000039331	-	100	97.872	ENSSBOG00000025275	C1D	100	97.872	Saimiri_boliviensis_boliviensis
ENSSSCG00000039331	-	99	81.560	ENSSHAG00000008352	C1D	68	81.560	Sarcophilus_harrisii
ENSSSCG00000039331	-	88	68.000	ENSSFOG00015010861	c1d	89	68.000	Scleropages_formosus
ENSSSCG00000039331	-	100	58.865	ENSSMAG00000019230	c1d	91	58.865	Scophthalmus_maximus
ENSSSCG00000039331	-	100	62.411	ENSSDUG00000020213	c1d	91	62.411	Seriola_dumerili
ENSSSCG00000039331	-	100	62.411	ENSSLDG00000017371	c1d	91	62.411	Seriola_lalandi_dorsalis
ENSSSCG00000039331	-	89	78.571	ENSSPUG00000006525	C1D	92	75.556	Sphenodon_punctatus
ENSSSCG00000039331	-	92	66.923	ENSSPAG00000008574	c1d	91	63.830	Stegastes_partitus
ENSSSCG00000039331	-	93	79.699	ENSTGUG00000002367	C1D	92	79.699	Taeniopygia_guttata
ENSSSCG00000039331	-	94	61.594	ENSTRUG00000012245	c1d	83	61.594	Takifugu_rubripes
ENSSSCG00000039331	-	99	61.429	ENSTNIG00000009827	c1d	95	61.429	Tetraodon_nigroviridis
ENSSSCG00000039331	-	100	96.454	ENSTBEG00000009797	C1D	100	96.454	Tupaia_belangeri
ENSSSCG00000039331	-	100	97.163	ENSTTRG00000013982	C1D	81	97.163	Tursiops_truncatus
ENSSSCG00000039331	-	100	84.722	ENSUAMG00000025246	C1D	100	84.722	Ursus_americanus
ENSSSCG00000039331	-	100	99.291	ENSUMAG00000021118	-	100	99.291	Ursus_maritimus
ENSSSCG00000039331	-	72	75.000	ENSUMAG00000006451	-	91	74.561	Ursus_maritimus
ENSSSCG00000039331	-	100	96.454	ENSVPAG00000012080	C1D	79	96.454	Vicugna_pacos
ENSSSCG00000039331	-	100	96.454	ENSVVUG00000027629	C1D	88	96.454	Vulpes_vulpes
ENSSSCG00000039331	-	99	68.794	ENSXETG00000025934	c1d	97	68.794	Xenopus_tropicalis
ENSSSCG00000039331	-	89	67.200	ENSXCOG00000013813	c1d	88	64.706	Xiphophorus_couchianus
ENSSSCG00000039331	-	89	66.400	ENSXMAG00000022273	c1d	88	63.971	Xiphophorus_maculatus