EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000039440 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 1398 bases
Position: chr14:75290956-75292353
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000054334	RRM_1	PF00076.22	9.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000042757	-	957	-	ENSSSCP00000054334	318 (aa)	-	A0A287BDD1

Gene Model

Click here to download ENSSSCG00000039440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039440's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000039440	-	89	30.508	ENSSSCG00000006063	PABPC1	59	30.508
ENSSSCG00000039440	-	79	66.049	ENSSSCG00000006665	-	85	66.575

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039440	-	79	65.741	ENSG00000143368	SF3B4	100	61.579	Homo_sapiens
ENSSSCG00000039440	-	79	65.741	ENSAMEG00000010073	SF3B4	85	66.298	Ailuropoda_melanoleuca
ENSSSCG00000039440	-	56	63.043	ENSACIG00000018455	sf3b4	70	62.712	Amphilophus_citrinellus
ENSSSCG00000039440	-	51	64.953	ENSACAG00000010019	SF3B4	85	57.542	Anolis_carolinensis
ENSSSCG00000039440	-	79	65.741	ENSANAG00000031025	SF3B4	85	64.365	Aotus_nancymaae
ENSSSCG00000039440	-	58	62.447	ENSACLG00000014260	sf3b4	79	55.000	Astatotilapia_calliptera
ENSSSCG00000039440	-	56	63.478	ENSAMXG00000008282	sf3b4	99	51.117	Astyanax_mexicanus
ENSSSCG00000039440	-	70	64.094	ENSBTAG00000012793	-	82	65.075	Bos_taurus
ENSSSCG00000039440	-	79	65.741	ENSBTAG00000012495	SF3B4	85	66.298	Bos_taurus
ENSSSCG00000039440	-	61	50.000	WBGene00004723	sap-49	55	53.953	Caenorhabditis_elegans
ENSSSCG00000039440	-	79	50.179	ENSCJAG00000042351	SF3B4	81	51.735	Callithrix_jacchus
ENSSSCG00000039440	-	79	65.432	ENSCAFG00000011617	SF3B4	85	65.746	Canis_familiaris
ENSSSCG00000039440	-	79	65.432	ENSCAFG00020019775	SF3B4	85	65.746	Canis_lupus_dingo
ENSSSCG00000039440	-	79	65.741	ENSCHIG00000025663	-	85	66.298	Capra_hircus
ENSSSCG00000039440	-	79	48.734	ENSCHIG00000006654	-	98	43.291	Capra_hircus
ENSSSCG00000039440	-	79	65.741	ENSTSYG00000009295	SF3B4	85	64.365	Carlito_syrichta
ENSSSCG00000039440	-	61	64.851	ENSCAPG00000006451	SF3B4	64	65.106	Cavia_aperea
ENSSSCG00000039440	-	79	65.432	ENSCPOG00000008267	SF3B4	85	66.022	Cavia_porcellus
ENSSSCG00000039440	-	79	61.111	ENSCCAG00000021751	-	78	61.864	Cebus_capucinus
ENSSSCG00000039440	-	76	59.621	ENSCCAG00000019823	-	74	57.188	Cebus_capucinus
ENSSSCG00000039440	-	79	65.741	ENSCATG00000033114	SF3B4	85	64.365	Cercocebus_atys
ENSSSCG00000039440	-	79	65.432	ENSCLAG00000015851	SF3B4	85	66.022	Chinchilla_lanigera
ENSSSCG00000039440	-	79	65.741	ENSCSAG00000018129	SF3B4	85	64.365	Chlorocebus_sabaeus
ENSSSCG00000039440	-	51	64.953	ENSCPBG00000008041	SF3B4	86	58.217	Chrysemys_picta_bellii
ENSSSCG00000039440	-	51	59.722	ENSCING00000002337	-	65	56.667	Ciona_intestinalis
ENSSSCG00000039440	-	79	65.741	ENSCANG00000035579	SF3B4	85	64.365	Colobus_angolensis_palliatus
ENSSSCG00000039440	-	58	87.097	ENSCGRG00001003590	Sf3b4	85	66.022	Cricetulus_griseus_chok1gshd
ENSSSCG00000039440	-	58	87.097	ENSCGRG00000016914	Sf3b4	85	66.022	Cricetulus_griseus_crigri
ENSSSCG00000039440	-	58	61.181	ENSCVAG00000005536	sf3b4	100	48.866	Cyprinodon_variegatus
ENSSSCG00000039440	-	56	63.478	ENSDARG00000018574	sf3b4	79	57.188	Danio_rerio
ENSSSCG00000039440	-	73	64.169	ENSDNOG00000048908	-	83	64.368	Dasypus_novemcinctus
ENSSSCG00000039440	-	97	54.250	ENSDNOG00000037231	-	84	58.258	Dasypus_novemcinctus
ENSSSCG00000039440	-	79	65.741	ENSDORG00000016366	Sf3b4	85	66.298	Dipodomys_ordii
ENSSSCG00000039440	-	53	55.656	FBgn0015818	Spx	62	56.744	Drosophila_melanogaster
ENSSSCG00000039440	-	79	58.951	ENSETEG00000008963	SF3B4	78	59.940	Echinops_telfairi
ENSSSCG00000039440	-	79	65.741	ENSEASG00005001477	SF3B4	85	66.298	Equus_asinus_asinus
ENSSSCG00000039440	-	79	65.741	ENSECAG00000024737	SF3B4	85	66.298	Equus_caballus
ENSSSCG00000039440	-	79	65.741	ENSFCAG00000010106	SF3B4	85	66.298	Felis_catus
ENSSSCG00000039440	-	79	65.432	ENSFDAG00000009286	SF3B4	85	66.022	Fukomys_damarensis
ENSSSCG00000039440	-	51	64.953	ENSGALG00000013352	SF3B4	85	57.542	Gallus_gallus
ENSSSCG00000039440	-	64	59.623	ENSGAFG00000010181	sf3b4	80	55.625	Gambusia_affinis
ENSSSCG00000039440	-	51	64.953	ENSGAGG00000025055	SF3B4	75	58.380	Gopherus_agassizii
ENSSSCG00000039440	-	83	61.165	ENSGGOG00000038845	-	85	61.963	Gorilla_gorilla
ENSSSCG00000039440	-	79	65.741	ENSGGOG00000004761	SF3B4	85	64.365	Gorilla_gorilla
ENSSSCG00000039440	-	58	62.447	ENSHBUG00000002028	sf3b4	79	55.000	Haplochromis_burtoni
ENSSSCG00000039440	-	79	65.432	ENSHGLG00000012360	SF3B4	85	66.022	Heterocephalus_glaber_female
ENSSSCG00000039440	-	58	83.871	ENSHGLG00100008533	SF3B4	85	64.345	Heterocephalus_glaber_male
ENSSSCG00000039440	-	50	64.319	ENSHCOG00000003014	sf3b4	78	55.486	Hippocampus_comes
ENSSSCG00000039440	-	71	51.724	ENSSTOG00000029627	-	75	50.158	Ictidomys_tridecemlineatus
ENSSSCG00000039440	-	79	65.741	ENSSTOG00000000684	-	85	66.298	Ictidomys_tridecemlineatus
ENSSSCG00000039440	-	58	87.097	ENSJJAG00000022500	Sf3b4	98	57.840	Jaculus_jaculus
ENSSSCG00000039440	-	58	62.869	ENSKMAG00000008154	sf3b4	81	55.937	Kryptolebias_marmoratus
ENSSSCG00000039440	-	56	64.224	ENSLBEG00000026818	sf3b4	79	57.680	Labrus_bergylta
ENSSSCG00000039440	-	55	63.158	ENSLACG00000004436	SF3B4	91	54.103	Latimeria_chalumnae
ENSSSCG00000039440	-	79	61.846	ENSLAFG00000008531	SF3B4	85	66.391	Loxodonta_africana
ENSSSCG00000039440	-	85	54.819	ENSMFAG00000039067	-	80	57.718	Macaca_fascicularis
ENSSSCG00000039440	-	79	65.741	ENSMFAG00000042395	SF3B4	85	64.365	Macaca_fascicularis
ENSSSCG00000039440	-	79	65.741	ENSMMUG00000007256	SF3B4	85	64.365	Macaca_mulatta
ENSSSCG00000039440	-	79	58.389	ENSMNEG00000031526	-	80	58.054	Macaca_nemestrina
ENSSSCG00000039440	-	79	65.741	ENSMNEG00000031839	SF3B4	85	64.365	Macaca_nemestrina
ENSSSCG00000039440	-	79	65.741	ENSMLEG00000038667	SF3B4	85	64.365	Mandrillus_leucophaeus
ENSSSCG00000039440	-	58	63.713	ENSMAMG00000014692	sf3b4	79	57.321	Mastacembelus_armatus
ENSSSCG00000039440	-	58	62.447	ENSMZEG00005026741	sf3b4	79	55.000	Maylandia_zebra
ENSSSCG00000039440	-	51	64.953	ENSMGAG00000000653	SF3B4	86	57.703	Meleagris_gallopavo
ENSSSCG00000039440	-	58	87.097	ENSMAUG00000015266	Sf3b4	85	66.022	Mesocricetus_auratus
ENSSSCG00000039440	-	79	65.741	ENSMICG00000044961	SF3B4	85	66.298	Microcebus_murinus
ENSSSCG00000039440	-	81	61.818	ENSMOCG00000014155	-	89	63.333	Microtus_ochrogaster
ENSSSCG00000039440	-	58	87.097	ENSMOCG00000013658	-	85	66.022	Microtus_ochrogaster
ENSSSCG00000039440	-	56	63.913	ENSMMOG00000018032	sf3b4	78	56.230	Mola_mola
ENSSSCG00000039440	-	79	65.741	ENSMODG00000018767	SF3B4	85	64.365	Monodelphis_domestica
ENSSSCG00000039440	-	50	64.789	ENSMALG00000006174	sf3b4	79	56.698	Monopterus_albus
ENSSSCG00000039440	-	58	87.097	MGP_CAROLIEiJ_G0025365	Sf3b4	85	66.022	Mus_caroli
ENSSSCG00000039440	-	58	87.097	ENSMUSG00000068856	Sf3b4	85	66.022	Mus_musculus
ENSSSCG00000039440	-	58	87.097	MGP_PahariEiJ_G0026809	Sf3b4	85	66.022	Mus_pahari
ENSSSCG00000039440	-	58	87.097	MGP_SPRETEiJ_G0026309	Sf3b4	85	66.022	Mus_spretus
ENSSSCG00000039440	-	79	65.741	ENSMPUG00000005563	SF3B4	85	66.298	Mustela_putorius_furo
ENSSSCG00000039440	-	79	65.432	ENSMLUG00000010789	SF3B4	85	66.022	Myotis_lucifugus
ENSSSCG00000039440	-	63	91.111	ENSNGAG00000016337	Sf3b4	85	66.298	Nannospalax_galili
ENSSSCG00000039440	-	58	62.869	ENSNBRG00000013865	sf3b4	79	55.312	Neolamprologus_brichardi
ENSSSCG00000039440	-	100	58.690	ENSNLEG00000000537	-	83	63.323	Nomascus_leucogenys
ENSSSCG00000039440	-	65	87.097	ENSOPRG00000010808	SF3B4	86	64.266	Ochotona_princeps
ENSSSCG00000039440	-	91	57.550	ENSODEG00000003597	-	91	61.254	Octodon_degus
ENSSSCG00000039440	-	100	50.532	ENSODEG00000008916	-	85	54.072	Octodon_degus
ENSSSCG00000039440	-	58	62.025	ENSONIG00000002730	sf3b4	79	55.312	Oreochromis_niloticus
ENSSSCG00000039440	-	79	65.741	ENSOCUG00000004614	SF3B4	85	66.298	Oryctolagus_cuniculus
ENSSSCG00000039440	-	56	63.362	ENSORLG00000003062	sf3b4	81	55.660	Oryzias_latipes
ENSSSCG00000039440	-	56	63.362	ENSORLG00020000687	sf3b4	79	55.660	Oryzias_latipes_hni
ENSSSCG00000039440	-	56	63.362	ENSORLG00015010989	sf3b4	79	55.660	Oryzias_latipes_hsok
ENSSSCG00000039440	-	56	63.362	ENSOMEG00000013694	sf3b4	79	56.646	Oryzias_melastigma
ENSSSCG00000039440	-	79	65.741	ENSOGAG00000006265	SF3B4	85	66.298	Otolemur_garnettii
ENSSSCG00000039440	-	77	54.088	ENSOARG00000007368	-	79	54.462	Ovis_aries
ENSSSCG00000039440	-	79	65.741	ENSOARG00000020718	-	85	66.298	Ovis_aries
ENSSSCG00000039440	-	79	65.741	ENSPPAG00000040904	SF3B4	85	64.365	Pan_paniscus
ENSSSCG00000039440	-	79	62.939	ENSPPAG00000030024	-	86	64.723	Pan_paniscus
ENSSSCG00000039440	-	79	65.741	ENSPPRG00000007384	SF3B4	85	66.298	Panthera_pardus
ENSSSCG00000039440	-	79	65.741	ENSPTIG00000014530	SF3B4	85	66.298	Panthera_tigris_altaica
ENSSSCG00000039440	-	79	60.191	ENSPTRG00000049727	-	80	64.744	Pan_troglodytes
ENSSSCG00000039440	-	79	65.741	ENSPTRG00000001243	SF3B4	85	64.365	Pan_troglodytes
ENSSSCG00000039440	-	79	65.741	ENSPANG00000005126	SF3B4	85	64.365	Papio_anubis
ENSSSCG00000039440	-	57	63.948	ENSPKIG00000020669	sf3b4	99	51.870	Paramormyrops_kingsleyae
ENSSSCG00000039440	-	58	87.097	ENSPEMG00000017568	Sf3b4	85	66.022	Peromyscus_maniculatus_bairdii
ENSSSCG00000039440	-	50	60.563	ENSPMAG00000007842	-	78	50.303	Petromyzon_marinus
ENSSSCG00000039440	-	79	65.741	ENSPCIG00000008765	SF3B4	85	64.365	Phascolarctos_cinereus
ENSSSCG00000039440	-	58	62.025	ENSPFOG00000005754	sf3b4	80	55.108	Poecilia_formosa
ENSSSCG00000039440	-	58	62.025	ENSPLAG00000001401	sf3b4	88	55.108	Poecilia_latipinna
ENSSSCG00000039440	-	79	65.741	ENSPCOG00000015399	SF3B4	85	66.298	Propithecus_coquereli
ENSSSCG00000039440	-	79	65.741	ENSPVAG00000014171	SF3B4	85	66.298	Pteropus_vampyrus
ENSSSCG00000039440	-	58	62.447	ENSPNYG00000012700	sf3b4	79	55.000	Pundamilia_nyererei
ENSSSCG00000039440	-	56	63.478	ENSPNAG00000000686	sf3b4	81	56.289	Pygocentrus_nattereri
ENSSSCG00000039440	-	58	87.097	ENSRNOG00000021181	Sf3b4	85	66.022	Rattus_norvegicus
ENSSSCG00000039440	-	79	65.741	ENSRBIG00000043392	SF3B4	85	64.365	Rhinopithecus_bieti
ENSSSCG00000039440	-	83	59.295	ENSRROG00000028213	-	97	54.678	Rhinopithecus_roxellana
ENSSSCG00000039440	-	79	65.741	ENSRROG00000029366	SF3B4	85	64.365	Rhinopithecus_roxellana
ENSSSCG00000039440	-	79	65.432	ENSSBOG00000012310	-	85	64.088	Saimiri_boliviensis_boliviensis
ENSSSCG00000039440	-	77	52.830	ENSSBOG00000025174	-	74	53.846	Saimiri_boliviensis_boliviensis
ENSSSCG00000039440	-	79	62.654	ENSSHAG00000004043	SF3B4	85	61.602	Sarcophilus_harrisii
ENSSSCG00000039440	-	58	63.291	ENSSFOG00015008864	sf3b4	78	58.567	Scleropages_formosus
ENSSSCG00000039440	-	60	62.857	ENSSPUG00000001028	SF3B4	84	58.140	Sphenodon_punctatus
ENSSSCG00000039440	-	56	64.348	ENSSPAG00000019219	sf3b4	79	57.632	Stegastes_partitus
ENSSSCG00000039440	-	58	63.559	ENSTGUG00000004470	SF3B4	93	63.559	Taeniopygia_guttata
ENSSSCG00000039440	-	55	62.996	ENSTRUG00000004516	sf3b4	78	56.688	Takifugu_rubripes
ENSSSCG00000039440	-	79	65.741	ENSTTRG00000005217	SF3B4	85	66.298	Tursiops_truncatus
ENSSSCG00000039440	-	79	65.741	ENSUAMG00000022468	SF3B4	85	66.298	Ursus_americanus
ENSSSCG00000039440	-	58	87.097	ENSUMAG00000003802	SF3B4	86	65.746	Ursus_maritimus
ENSSSCG00000039440	-	75	65.064	ENSVPAG00000008152	SF3B4	85	65.714	Vicugna_pacos
ENSSSCG00000039440	-	77	60.815	ENSVVUG00000007732	-	97	60.847	Vulpes_vulpes
ENSSSCG00000039440	-	56	59.914	ENSXETG00000011038	sf3b4	58	61.991	Xenopus_tropicalis