EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000039653 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 371 bases
Position: chr5:20854495-20854865
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000051519	RNA_pol_Rpb4	PF03874.16	4e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000065299	-	297	-	ENSSSCP00000051519	98 (aa)	-	A0A287B5G1

Gene Model

Click here to download ENSSSCG00000039653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039653's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000039653	-	91	94.382	ENSSSCG00000031397	-	78	94.382
ENSSSCG00000039653	-	91	86.517	ENSSSCG00000034001	-	77	86.517
ENSSSCG00000039653	-	100	62.838	ENSSSCG00000032119	-	100	62.838

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039653	-	100	57.432	ENSG00000241258	CRCP	76	69.643	Homo_sapiens
ENSSSCG00000039653	-	86	67.327	ENSAPOG00000016572	crcp	72	65.094	Acanthochromis_polyacanthus
ENSSSCG00000039653	-	97	59.028	ENSAMEG00000015954	CRCP	99	59.722	Ailuropoda_melanoleuca
ENSSSCG00000039653	-	80	63.158	ENSACIG00000020248	crcp	71	58.491	Amphilophus_citrinellus
ENSSSCG00000039653	-	86	67.327	ENSAOCG00000021389	crcp	72	65.094	Amphiprion_ocellaris
ENSSSCG00000039653	-	65	61.728	ENSAPEG00000016688	crcp	59	61.728	Amphiprion_percula
ENSSSCG00000039653	-	86	65.347	ENSATEG00000008670	crcp	76	60.714	Anabas_testudineus
ENSSSCG00000039653	-	85	77.000	ENSANAG00000032466	CRCP	76	70.536	Aotus_nancymaae
ENSSSCG00000039653	-	86	66.337	ENSACLG00000007588	crcp	72	64.151	Astatotilapia_calliptera
ENSSSCG00000039653	-	88	59.223	ENSAMXG00000043940	crcp	71	59.223	Astyanax_mexicanus
ENSSSCG00000039653	-	100	57.432	ENSBTAG00000049986	-	76	68.750	Bos_taurus
ENSSSCG00000039653	-	100	58.784	ENSBTAG00000037489	CRCP	100	58.784	Bos_taurus
ENSSSCG00000039653	-	99	34.513	WBGene00044924	M106.7	87	34.513	Caenorhabditis_elegans
ENSSSCG00000039653	-	85	76.000	ENSCJAG00000004225	CRCP	76	69.643	Callithrix_jacchus
ENSSSCG00000039653	-	85	77.000	ENSCAFG00000010756	CRCP	76	70.536	Canis_familiaris
ENSSSCG00000039653	-	85	77.000	ENSCAFG00020005322	CRCP	76	70.536	Canis_lupus_dingo
ENSSSCG00000039653	-	80	69.792	ENSCHIG00000015299	CRCP	68	64.486	Capra_hircus
ENSSSCG00000039653	-	85	76.000	ENSTSYG00000005933	CRCP	76	69.643	Carlito_syrichta
ENSSSCG00000039653	-	86	59.524	ENSCATG00000036957	CRCP	69	54.737	Cercocebus_atys
ENSSSCG00000039653	-	85	75.000	ENSCLAG00000007249	CRCP	100	53.846	Chinchilla_lanigera
ENSSSCG00000039653	-	85	54.135	ENSCSAG00000018288	CRCP	55	67.010	Chlorocebus_sabaeus
ENSSSCG00000039653	-	86	69.307	ENSCPBG00000014854	CRCP	76	64.286	Chrysemys_picta_bellii
ENSSSCG00000039653	-	70	39.535	ENSCING00000003588	cgrp-rcp	78	36.735	Ciona_intestinalis
ENSSSCG00000039653	-	100	58.784	ENSCANG00000038796	CRCP	100	46.565	Colobus_angolensis_palliatus
ENSSSCG00000039653	-	86	72.277	ENSCGRG00001009376	Crcp	76	66.964	Cricetulus_griseus_chok1gshd
ENSSSCG00000039653	-	86	71.287	ENSCGRG00000003194	Crcp	76	66.071	Cricetulus_griseus_crigri
ENSSSCG00000039653	-	83	61.224	ENSCSEG00000018814	crcp	74	56.881	Cynoglossus_semilaevis
ENSSSCG00000039653	-	86	59.406	ENSCVAG00000013625	crcp	76	55.357	Cyprinodon_variegatus
ENSSSCG00000039653	-	86	65.347	ENSDARG00000069373	crcp	78	60.714	Danio_rerio
ENSSSCG00000039653	-	86	77.228	ENSDNOG00000002751	CRCP	76	71.429	Dasypus_novemcinctus
ENSSSCG00000039653	-	82	75.258	ENSDORG00000013712	Crcp	75	68.807	Dipodomys_ordii
ENSSSCG00000039653	-	100	59.459	ENSEASG00005008835	CRCP	100	59.459	Equus_asinus_asinus
ENSSSCG00000039653	-	97	58.621	ENSECAG00000011060	CRCP	98	58.621	Equus_caballus
ENSSSCG00000039653	-	68	66.667	ENSEEUG00000005796	-	73	60.417	Erinaceus_europaeus
ENSSSCG00000039653	-	85	66.000	ENSELUG00000019916	crcp	71	63.208	Esox_lucius
ENSSSCG00000039653	-	100	59.184	ENSFCAG00000022099	CRCP	100	59.864	Felis_catus
ENSSSCG00000039653	-	86	69.307	ENSFALG00000006720	CRCP	79	64.286	Ficedula_albicollis
ENSSSCG00000039653	-	86	74.257	ENSFDAG00000014337	CRCP	77	67.544	Fukomys_damarensis
ENSSSCG00000039653	-	86	63.366	ENSFHEG00000021283	crcp	76	58.929	Fundulus_heteroclitus
ENSSSCG00000039653	-	82	67.010	ENSGMOG00000011351	crcp	78	61.468	Gadus_morhua
ENSSSCG00000039653	-	86	69.307	ENSGALG00000002587	CRCP	77	64.286	Gallus_gallus
ENSSSCG00000039653	-	86	63.366	ENSGAFG00000002307	crcp	72	61.321	Gambusia_affinis
ENSSSCG00000039653	-	86	67.327	ENSGACG00000020468	crcp	78	62.500	Gasterosteus_aculeatus
ENSSSCG00000039653	-	86	69.307	ENSGAGG00000011445	CRCP	73	63.063	Gopherus_agassizii
ENSSSCG00000039653	-	100	57.432	ENSGGOG00000039733	CRCP	76	69.643	Gorilla_gorilla
ENSSSCG00000039653	-	86	67.327	ENSHBUG00000004779	crcp	72	65.094	Haplochromis_burtoni
ENSSSCG00000039653	-	86	72.277	ENSHGLG00000011719	CRCP	77	65.789	Heterocephalus_glaber_female
ENSSSCG00000039653	-	87	66.667	ENSHGLG00100005071	CRCP	69	66.667	Heterocephalus_glaber_male
ENSSSCG00000039653	-	83	61.224	ENSHCOG00000009105	crcp	77	56.881	Hippocampus_comes
ENSSSCG00000039653	-	86	64.356	ENSIPUG00000024520	CRCP	77	59.821	Ictalurus_punctatus
ENSSSCG00000039653	-	85	54.135	ENSSTOG00000008885	CRCP	73	67.010	Ictidomys_tridecemlineatus
ENSSSCG00000039653	-	100	58.784	ENSJJAG00000016893	Crcp	76	70.536	Jaculus_jaculus
ENSSSCG00000039653	-	86	63.366	ENSKMAG00000007300	crcp	76	58.929	Kryptolebias_marmoratus
ENSSSCG00000039653	-	91	61.321	ENSLBEG00000000804	crcp	74	61.321	Labrus_bergylta
ENSSSCG00000039653	-	83	67.347	ENSLOCG00000005302	crcp	75	62.385	Lepisosteus_oculatus
ENSSSCG00000039653	-	82	77.320	ENSLAFG00000027377	CRCP	76	70.642	Loxodonta_africana
ENSSSCG00000039653	-	85	76.000	ENSMFAG00000037828	CRCP	76	69.643	Macaca_fascicularis
ENSSSCG00000039653	-	85	76.000	ENSMMUG00000014524	CRCP	76	69.643	Macaca_mulatta
ENSSSCG00000039653	-	84	64.646	ENSMNEG00000030945	CRCP	97	64.646	Macaca_nemestrina
ENSSSCG00000039653	-	85	76.000	ENSMLEG00000043904	CRCP	76	69.643	Mandrillus_leucophaeus
ENSSSCG00000039653	-	86	66.337	ENSMAMG00000021168	crcp	73	64.151	Mastacembelus_armatus
ENSSSCG00000039653	-	86	66.337	ENSMZEG00005025255	crcp	72	64.151	Maylandia_zebra
ENSSSCG00000039653	-	85	68.000	ENSMGAG00000004593	CRCP	77	63.063	Meleagris_gallopavo
ENSSSCG00000039653	-	68	69.048	ENSMAUG00000018383	Crcp	100	69.048	Mesocricetus_auratus
ENSSSCG00000039653	-	100	58.784	ENSMICG00000004191	CRCP	76	71.429	Microcebus_murinus
ENSSSCG00000039653	-	97	53.793	ENSMOCG00000002717	Crcp	74	65.138	Microtus_ochrogaster
ENSSSCG00000039653	-	83	65.306	ENSMMOG00000011491	crcp	69	60.550	Mola_mola
ENSSSCG00000039653	-	83	62.245	ENSMALG00000020309	crcp	75	57.798	Monopterus_albus
ENSSSCG00000039653	-	86	72.277	MGP_CAROLIEiJ_G0027795	Crcp	76	66.964	Mus_caroli
ENSSSCG00000039653	-	86	72.277	ENSMUSG00000025532	Crcp	76	66.964	Mus_musculus
ENSSSCG00000039653	-	86	72.277	MGP_PahariEiJ_G0024389	Crcp	76	66.964	Mus_pahari
ENSSSCG00000039653	-	86	71.287	MGP_SPRETEiJ_G0028793	Crcp	76	66.071	Mus_spretus
ENSSSCG00000039653	-	83	76.531	ENSMPUG00000016198	CRCP	76	70.000	Mustela_putorius_furo
ENSSSCG00000039653	-	97	57.931	ENSMLUG00000012217	CRCP	75	69.725	Myotis_lucifugus
ENSSSCG00000039653	-	100	59.459	ENSNGAG00000021687	Crcp	100	59.459	Nannospalax_galili
ENSSSCG00000039653	-	97	57.241	ENSNLEG00000001437	CRCP	100	45.802	Nomascus_leucogenys
ENSSSCG00000039653	-	82	57.778	ENSODEG00000003432	-	67	57.143	Octodon_degus
ENSSSCG00000039653	-	83	74.490	ENSODEG00000014255	-	77	67.568	Octodon_degus
ENSSSCG00000039653	-	86	74.257	ENSODEG00000020033	-	77	67.544	Octodon_degus
ENSSSCG00000039653	-	86	55.340	ENSONIG00000008677	crcp	72	53.704	Oreochromis_niloticus
ENSSSCG00000039653	-	87	69.903	ENSOANG00000009026	-	75	69.903	Ornithorhynchus_anatinus
ENSSSCG00000039653	-	85	75.000	ENSOCUG00000014827	CRCP	76	68.750	Oryctolagus_cuniculus
ENSSSCG00000039653	-	86	62.376	ENSORLG00000028784	crcp	76	58.036	Oryzias_latipes
ENSSSCG00000039653	-	86	62.376	ENSORLG00020017373	crcp	76	58.036	Oryzias_latipes_hni
ENSSSCG00000039653	-	86	61.386	ENSORLG00015001859	crcp	76	57.143	Oryzias_latipes_hsok
ENSSSCG00000039653	-	86	61.386	ENSOMEG00000008006	crcp	76	57.143	Oryzias_melastigma
ENSSSCG00000039653	-	83	63.918	ENSOGAG00000001914	CRCP	74	59.259	Otolemur_garnettii
ENSSSCG00000039653	-	100	57.432	ENSPPAG00000030427	CRCP	76	69.643	Pan_paniscus
ENSSSCG00000039653	-	100	59.184	ENSPPRG00000012841	CRCP	100	59.864	Panthera_pardus
ENSSSCG00000039653	-	97	54.795	ENSPTIG00000009335	CRCP	100	55.479	Panthera_tigris_altaica
ENSSSCG00000039653	-	97	56.552	ENSPTRG00000019246	-	74	68.807	Pan_troglodytes
ENSSSCG00000039653	-	100	57.432	ENSPTRG00000046581	CRCP	76	69.643	Pan_troglodytes
ENSSSCG00000039653	-	85	76.000	ENSPANG00000023118	CRCP	76	69.643	Papio_anubis
ENSSSCG00000039653	-	86	68.317	ENSPKIG00000011467	crcp	76	63.393	Paramormyrops_kingsleyae
ENSSSCG00000039653	-	83	65.306	ENSPSIG00000008385	CRCP	73	60.550	Pelodiscus_sinensis
ENSSSCG00000039653	-	82	65.979	ENSPMGG00000005986	crcp	77	61.062	Periophthalmus_magnuspinnatus
ENSSSCG00000039653	-	86	72.277	ENSPEMG00000010829	Crcp	76	66.964	Peromyscus_maniculatus_bairdii
ENSSSCG00000039653	-	86	63.366	ENSPFOG00000008626	crcp	76	58.929	Poecilia_formosa
ENSSSCG00000039653	-	86	63.366	ENSPLAG00000005996	crcp	76	58.929	Poecilia_latipinna
ENSSSCG00000039653	-	86	63.366	ENSPMEG00000020035	crcp	76	58.929	Poecilia_mexicana
ENSSSCG00000039653	-	88	62.136	ENSPREG00000008487	crcp	76	62.136	Poecilia_reticulata
ENSSSCG00000039653	-	85	76.000	ENSPPYG00000017525	CRCP	76	69.643	Pongo_abelii
ENSSSCG00000039653	-	86	67.327	ENSPNYG00000016988	crcp	72	65.094	Pundamilia_nyererei
ENSSSCG00000039653	-	85	67.000	ENSPNAG00000004712	crcp	77	61.607	Pygocentrus_nattereri
ENSSSCG00000039653	-	84	71.717	ENSRNOG00000000901	Crcp	76	65.766	Rattus_norvegicus
ENSSSCG00000039653	-	97	57.931	ENSRBIG00000039256	CRCP	74	69.725	Rhinopithecus_bieti
ENSSSCG00000039653	-	97	57.931	ENSRROG00000037982	CRCP	74	69.725	Rhinopithecus_roxellana
ENSSSCG00000039653	-	82	76.289	ENSSBOG00000025998	-	75	69.725	Saimiri_boliviensis_boliviensis
ENSSSCG00000039653	-	85	73.000	ENSSBOG00000011617	-	76	66.964	Saimiri_boliviensis_boliviensis
ENSSSCG00000039653	-	83	71.429	ENSSHAG00000007315	CRCP	78	66.372	Sarcophilus_harrisii
ENSSSCG00000039653	-	91	65.094	ENSSFOG00015013799	crcp	71	65.094	Scleropages_formosus
ENSSSCG00000039653	-	86	65.347	ENSSMAG00000019004	crcp	76	60.714	Scophthalmus_maximus
ENSSSCG00000039653	-	85	68.000	ENSSDUG00000019628	crcp	69	65.094	Seriola_dumerili
ENSSSCG00000039653	-	85	68.000	ENSSLDG00000016367	crcp	76	62.500	Seriola_lalandi_dorsalis
ENSSSCG00000039653	-	91	65.094	ENSSPUG00000002367	CRCP	73	65.094	Sphenodon_punctatus
ENSSSCG00000039653	-	86	67.327	ENSSPAG00000010443	crcp	76	62.500	Stegastes_partitus
ENSSSCG00000039653	-	81	68.750	ENSTGUG00000005354	CRCP	100	68.750	Taeniopygia_guttata
ENSSSCG00000039653	-	86	64.356	ENSTRUG00000025161	crcp	72	62.264	Takifugu_rubripes
ENSSSCG00000039653	-	86	62.136	ENSTNIG00000016137	crcp	72	60.185	Tetraodon_nigroviridis
ENSSSCG00000039653	-	100	57.432	ENSTTRG00000002888	CRCP	100	57.432	Tursiops_truncatus
ENSSSCG00000039653	-	100	61.224	ENSUMAG00000015406	CRCP	100	59.864	Ursus_maritimus
ENSSSCG00000039653	-	97	58.621	ENSVPAG00000006107	CRCP	100	58.621	Vicugna_pacos
ENSSSCG00000039653	-	85	77.000	ENSVVUG00000016521	CRCP	76	70.536	Vulpes_vulpes
ENSSSCG00000039653	-	83	64.286	ENSXETG00000025028	crcp	76	59.633	Xenopus_tropicalis
ENSSSCG00000039653	-	70	61.628	ENSXCOG00000007013	crcp	62	56.701	Xiphophorus_couchianus
ENSSSCG00000039653	-	86	63.366	ENSXMAG00000022222	crcp	76	58.929	Xiphophorus_maculatus