EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000039705 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 3247 bases
Position: chr2:82235428-82238674
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000054148	Exo_endo_phos	PF03372.23	1.8e-06	1	1
ENSSSCP00000046349	Exo_endo_phos	PF03372.23	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000064150	-	738	-	ENSSSCP00000046349	245 (aa)	-	A0A287AQL4
ENSSSCT00000044840	-	729	-	ENSSSCP00000054148	242 (aa)	-	A0A287BDF1

Gene Model

Click here to download ENSSSCG00000039705's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039705's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000039705	-	100	57.407	ENSSSCG00000040060	-	100	57.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039705	-	92	59.155	ENSG00000100823	APEX1	97	62.275	Homo_sapiens
ENSSSCG00000039705	-	89	41.516	ENSAPOG00000017002	apex1	97	39.404	Acanthochromis_polyacanthus
ENSSSCG00000039705	-	96	57.419	ENSAMEG00000005418	APEX1	96	57.419	Ailuropoda_melanoleuca
ENSSSCG00000039705	-	89	42.599	ENSACIG00000010653	apex1	98	41.275	Amphilophus_citrinellus
ENSSSCG00000039705	-	89	41.877	ENSAOCG00000009649	apex1	95	39.867	Amphiprion_ocellaris
ENSSSCG00000039705	-	89	41.877	ENSAPEG00000021453	apex1	95	39.867	Amphiprion_percula
ENSSSCG00000039705	-	88	43.116	ENSATEG00000002883	apex1	93	41.060	Anabas_testudineus
ENSSSCG00000039705	-	92	43.972	ENSACAG00000008099	APEX1	92	42.761	Anolis_carolinensis
ENSSSCG00000039705	-	92	58.803	ENSANAG00000030117	APEX1	96	56.452	Aotus_nancymaae
ENSSSCG00000039705	-	89	42.238	ENSACLG00000018441	apex1	95	40.264	Astatotilapia_calliptera
ENSSSCG00000039705	-	89	41.155	ENSAMXG00000034699	apex1	87	41.155	Astyanax_mexicanus
ENSSSCG00000039705	-	100	55.247	ENSBTAG00000002745	APEX1	96	56.452	Bos_taurus
ENSSSCG00000039705	-	72	31.746	WBGene00001372	exo-3	63	31.746	Caenorhabditis_elegans
ENSSSCG00000039705	-	92	59.859	ENSCJAG00000009726	APEX1	96	56.452	Callithrix_jacchus
ENSSSCG00000039705	-	92	60.211	ENSCAFG00000032033	APEX1	93	59.603	Canis_familiaris
ENSSSCG00000039705	-	92	60.211	ENSCAFG00020014377	-	93	59.603	Canis_lupus_dingo
ENSSSCG00000039705	-	100	55.247	ENSCHIG00000007298	-	96	56.452	Capra_hircus
ENSSSCG00000039705	-	96	60.142	ENSCHIG00000014537	-	97	60.071	Capra_hircus
ENSSSCG00000039705	-	100	54.012	ENSTSYG00000034813	APEX1	100	54.012	Carlito_syrichta
ENSSSCG00000039705	-	79	60.744	ENSCAPG00000016235	APEX1	91	60.744	Cavia_aperea
ENSSSCG00000039705	-	98	57.718	ENSCPOG00000030909	APEX1	98	55.346	Cavia_porcellus
ENSSSCG00000039705	-	99	46.855	ENSCCAG00000031931	-	98	46.855	Cebus_capucinus
ENSSSCG00000039705	-	92	59.859	ENSCCAG00000033056	-	96	56.452	Cebus_capucinus
ENSSSCG00000039705	-	99	57.947	ENSCATG00000015580	APEX1	96	56.129	Cercocebus_atys
ENSSSCG00000039705	-	99	57.947	ENSCLAG00000001002	APEX1	98	55.346	Chinchilla_lanigera
ENSSSCG00000039705	-	99	57.947	ENSCSAG00000016685	-	96	56.129	Chlorocebus_sabaeus
ENSSSCG00000039705	-	99	57.947	ENSCSAG00000016670	-	96	56.129	Chlorocebus_sabaeus
ENSSSCG00000039705	-	90	43.956	ENSCPBG00000009567	APEX1	84	43.956	Chrysemys_picta_bellii
ENSSSCG00000039705	-	83	38.554	ENSCING00000008137	-	78	38.554	Ciona_intestinalis
ENSSSCG00000039705	-	99	58.278	ENSCANG00000030726	APEX1	96	56.452	Colobus_angolensis_palliatus
ENSSSCG00000039705	-	100	53.251	ENSCGRG00001017046	Apex1	100	53.251	Cricetulus_griseus_chok1gshd
ENSSSCG00000039705	-	100	53.251	ENSCGRG00000008984	Apex1	100	53.251	Cricetulus_griseus_crigri
ENSSSCG00000039705	-	98	38.870	ENSCSEG00000017499	apex1	95	39.535	Cynoglossus_semilaevis
ENSSSCG00000039705	-	89	41.516	ENSCVAG00000022075	apex1	95	39.934	Cyprinodon_variegatus
ENSSSCG00000039705	-	83	43.426	ENSDARG00000045843	apex1	94	40.067	Danio_rerio
ENSSSCG00000039705	-	96	52.769	ENSDNOG00000042234	APEX1	90	52.769	Dasypus_novemcinctus
ENSSSCG00000039705	-	100	55.556	ENSDORG00000001616	Apex1	100	55.556	Dipodomys_ordii
ENSSSCG00000039705	-	96	54.870	ENSETEG00000004855	-	96	54.839	Echinops_telfairi
ENSSSCG00000039705	-	70	45.604	ENSEBUG00000000622	-	68	45.604	Eptatretus_burgeri
ENSSSCG00000039705	-	100	55.864	ENSEASG00005017489	APEX1	74	55.864	Equus_asinus_asinus
ENSSSCG00000039705	-	100	55.864	ENSECAG00000022325	APEX1	82	55.864	Equus_caballus
ENSSSCG00000039705	-	82	65.919	ENSEEUG00000012569	APEX1	81	64.315	Erinaceus_europaeus
ENSSSCG00000039705	-	89	41.155	ENSELUG00000021706	apex1	87	41.155	Esox_lucius
ENSSSCG00000039705	-	99	58.609	ENSFCAG00000030869	APEX1	96	56.774	Felis_catus
ENSSSCG00000039705	-	99	56.954	ENSFDAG00000006120	APEX1	98	54.403	Fukomys_damarensis
ENSSSCG00000039705	-	89	42.238	ENSFHEG00000009031	apex1	78	40.604	Fundulus_heteroclitus
ENSSSCG00000039705	-	83	41.036	ENSGMOG00000007943	apex1	78	41.036	Gadus_morhua
ENSSSCG00000039705	-	89	42.960	ENSGAFG00000005311	apex1	95	40.594	Gambusia_affinis
ENSSSCG00000039705	-	89	40.433	ENSGACG00000019497	apex1	91	43.028	Gasterosteus_aculeatus
ENSSSCG00000039705	-	90	43.590	ENSGAGG00000014999	APEX1	84	43.590	Gopherus_agassizii
ENSSSCG00000039705	-	96	56.129	ENSGGOG00000002128	APEX1	96	56.129	Gorilla_gorilla
ENSSSCG00000039705	-	89	41.877	ENSHBUG00000005894	apex1	96	39.934	Haplochromis_burtoni
ENSSSCG00000039705	-	99	57.616	ENSHGLG00000002848	APEX1	98	55.346	Heterocephalus_glaber_female
ENSSSCG00000039705	-	99	57.616	ENSHGLG00100017878	APEX1	98	55.346	Heterocephalus_glaber_male
ENSSSCG00000039705	-	98	40.532	ENSHCOG00000009961	apex1	93	40.532	Hippocampus_comes
ENSSSCG00000039705	-	99	38.436	ENSIPUG00000005799	apex1	93	38.762	Ictalurus_punctatus
ENSSSCG00000039705	-	100	54.321	ENSSTOG00000010096	APEX1	100	54.321	Ictidomys_tridecemlineatus
ENSSSCG00000039705	-	99	57.947	ENSJJAG00000012067	-	95	56.634	Jaculus_jaculus
ENSSSCG00000039705	-	89	54.513	ENSJJAG00000003660	-	93	52.649	Jaculus_jaculus
ENSSSCG00000039705	-	92	51.408	ENSJJAG00000020465	-	95	50.662	Jaculus_jaculus
ENSSSCG00000039705	-	89	41.155	ENSKMAG00000021171	apex1	95	39.735	Kryptolebias_marmoratus
ENSSSCG00000039705	-	89	40.794	ENSLBEG00000010248	apex1	96	38.361	Labrus_bergylta
ENSSSCG00000039705	-	99	40.924	ENSLACG00000008617	APEX1	95	40.924	Latimeria_chalumnae
ENSSSCG00000039705	-	98	40.984	ENSLOCG00000015516	apex1	94	40.984	Lepisosteus_oculatus
ENSSSCG00000039705	-	99	54.403	ENSLAFG00000021872	APEX1	98	54.403	Loxodonta_africana
ENSSSCG00000039705	-	99	57.616	ENSMFAG00000002565	APEX1	96	56.129	Macaca_fascicularis
ENSSSCG00000039705	-	99	57.616	ENSMMUG00000048039	APEX1	96	56.129	Macaca_mulatta
ENSSSCG00000039705	-	99	57.616	ENSMNEG00000036944	APEX1	96	56.129	Macaca_nemestrina
ENSSSCG00000039705	-	99	57.947	ENSMLEG00000042125	APEX1	96	56.129	Mandrillus_leucophaeus
ENSSSCG00000039705	-	89	41.877	ENSMAMG00000023526	apex1	95	39.604	Mastacembelus_armatus
ENSSSCG00000039705	-	89	42.238	ENSMZEG00005014187	apex1	95	40.264	Maylandia_zebra
ENSSSCG00000039705	-	100	54.037	ENSMAUG00000013994	Apex1	100	54.037	Mesocricetus_auratus
ENSSSCG00000039705	-	99	58.278	ENSMICG00000043554	APEX1	96	56.129	Microcebus_murinus
ENSSSCG00000039705	-	99	57.285	ENSMOCG00000013721	Apex1	98	55.031	Microtus_ochrogaster
ENSSSCG00000039705	-	89	41.007	ENSMMOG00000010031	apex1	92	39.073	Mola_mola
ENSSSCG00000039705	-	92	54.577	ENSMODG00000007125	APEX1	92	52.824	Monodelphis_domestica
ENSSSCG00000039705	-	89	36.823	ENSMALG00000011699	apex1	72	36.823	Monopterus_albus
ENSSSCG00000039705	-	99	55.590	MGP_CAROLIEiJ_G0019209	Apex1	100	58.192	Mus_caroli
ENSSSCG00000039705	-	100	56.037	ENSMUSG00000035960	Apex1	100	62.150	Mus_musculus
ENSSSCG00000039705	-	100	55.728	MGP_PahariEiJ_G0030232	Apex1	100	58.192	Mus_pahari
ENSSSCG00000039705	-	100	56.037	MGP_SPRETEiJ_G0020101	Apex1	100	58.192	Mus_spretus
ENSSSCG00000039705	-	99	57.756	ENSMLUG00000028957	APEX1	96	56.410	Myotis_lucifugus
ENSSSCG00000039705	-	99	57.285	ENSNGAG00000002725	-	96	55.484	Nannospalax_galili
ENSSSCG00000039705	-	90	55.983	ENSNGAG00000021748	-	73	53.306	Nannospalax_galili
ENSSSCG00000039705	-	89	41.877	ENSNBRG00000005334	apex1	87	39.934	Neolamprologus_brichardi
ENSSSCG00000039705	-	96	56.129	ENSNLEG00000010839	APEX1	96	56.129	Nomascus_leucogenys
ENSSSCG00000039705	-	99	53.135	ENSMEUG00000014519	APEX1	96	53.074	Notamacropus_eugenii
ENSSSCG00000039705	-	98	58.054	ENSOPRG00000014029	APEX1	98	54.890	Ochotona_princeps
ENSSSCG00000039705	-	99	58.140	ENSODEG00000001703	-	98	55.521	Octodon_degus
ENSSSCG00000039705	-	88	57.940	ENSODEG00000004777	-	97	54.307	Octodon_degus
ENSSSCG00000039705	-	89	50.787	ENSODEG00000006583	-	80	50.787	Octodon_degus
ENSSSCG00000039705	-	89	42.238	ENSONIG00000012089	apex1	95	40.264	Oreochromis_niloticus
ENSSSCG00000039705	-	89	50.542	ENSOANG00000008836	APEX1	74	47.883	Ornithorhynchus_anatinus
ENSSSCG00000039705	-	100	55.247	ENSOCUG00000005022	APEX1	98	55.346	Oryctolagus_cuniculus
ENSSSCG00000039705	-	89	42.960	ENSORLG00000012378	apex1	95	40.924	Oryzias_latipes
ENSSSCG00000039705	-	89	42.960	ENSORLG00020021371	apex1	95	40.924	Oryzias_latipes_hni
ENSSSCG00000039705	-	89	42.960	ENSORLG00015020089	apex1	95	40.924	Oryzias_latipes_hsok
ENSSSCG00000039705	-	89	42.960	ENSOMEG00000018876	apex1	95	40.594	Oryzias_melastigma
ENSSSCG00000039705	-	99	57.285	ENSOGAG00000013335	-	96	55.161	Otolemur_garnettii
ENSSSCG00000039705	-	96	49.032	ENSOGAG00000029355	-	97	49.032	Otolemur_garnettii
ENSSSCG00000039705	-	90	57.795	ENSOARG00000001876	-	79	59.438	Ovis_aries
ENSSSCG00000039705	-	100	54.630	ENSOARG00000019740	-	96	55.806	Ovis_aries
ENSSSCG00000039705	-	96	54.882	ENSOARG00000014424	-	96	54.849	Ovis_aries
ENSSSCG00000039705	-	92	59.507	ENSPPAG00000038760	APEX1	94	58.278	Pan_paniscus
ENSSSCG00000039705	-	96	56.774	ENSPPRG00000011794	APEX1	96	56.774	Panthera_pardus
ENSSSCG00000039705	-	99	58.609	ENSPTIG00000014829	APEX1	96	56.774	Panthera_tigris_altaica
ENSSSCG00000039705	-	92	59.507	ENSPTRG00000006093	APEX1	94	58.278	Pan_troglodytes
ENSSSCG00000039705	-	99	57.947	ENSPANG00000022757	APEX1	96	56.129	Papio_anubis
ENSSSCG00000039705	-	89	40.794	ENSPKIG00000003504	apex1	94	38.944	Paramormyrops_kingsleyae
ENSSSCG00000039705	-	81	40.964	ENSPMGG00000016596	apex1	73	40.964	Periophthalmus_magnuspinnatus
ENSSSCG00000039705	-	100	55.728	ENSPEMG00000019097	Apex1	100	55.728	Peromyscus_maniculatus_bairdii
ENSSSCG00000039705	-	86	39.850	ENSPMAG00000007275	-	88	39.850	Petromyzon_marinus
ENSSSCG00000039705	-	92	53.873	ENSPCIG00000023274	APEX1	87	53.873	Phascolarctos_cinereus
ENSSSCG00000039705	-	89	42.238	ENSPFOG00000004178	apex1	95	40.594	Poecilia_formosa
ENSSSCG00000039705	-	86	42.322	ENSPLAG00000012779	apex1	95	40.264	Poecilia_latipinna
ENSSSCG00000039705	-	89	42.238	ENSPMEG00000019623	apex1	95	40.594	Poecilia_mexicana
ENSSSCG00000039705	-	86	42.322	ENSPREG00000014298	apex1	95	40.264	Poecilia_reticulata
ENSSSCG00000039705	-	96	55.484	ENSPPYG00000005565	APEX1	96	55.484	Pongo_abelii
ENSSSCG00000039705	-	99	54.305	ENSPCAG00000010376	APEX1	96	52.258	Procavia_capensis
ENSSSCG00000039705	-	99	57.947	ENSPCOG00000021564	APEX1	96	55.806	Propithecus_coquereli
ENSSSCG00000039705	-	100	54.908	ENSPVAG00000010736	APEX1	100	54.908	Pteropus_vampyrus
ENSSSCG00000039705	-	89	42.238	ENSPNYG00000023940	apex1	95	40.264	Pundamilia_nyererei
ENSSSCG00000039705	-	79	47.222	ENSPNAG00000020897	apex1	70	47.222	Pygocentrus_nattereri
ENSSSCG00000039705	-	100	55.418	ENSRNOG00000009663	Apex1	100	55.418	Rattus_norvegicus
ENSSSCG00000039705	-	99	58.278	ENSRBIG00000038325	APEX1	94	56.452	Rhinopithecus_bieti
ENSSSCG00000039705	-	99	52.980	ENSSBOG00000031372	-	97	52.145	Saimiri_boliviensis_boliviensis
ENSSSCG00000039705	-	92	59.859	ENSSBOG00000018921	-	96	56.452	Saimiri_boliviensis_boliviensis
ENSSSCG00000039705	-	92	53.659	ENSSHAG00000013524	APEX1	95	50.318	Sarcophilus_harrisii
ENSSSCG00000039705	-	89	38.628	ENSSFOG00015001948	apex1	96	37.171	Scleropages_formosus
ENSSSCG00000039705	-	89	41.155	ENSSMAG00000013348	apex1	92	39.394	Scophthalmus_maximus
ENSSSCG00000039705	-	89	40.072	ENSSDUG00000016377	apex1	95	38.614	Seriola_dumerili
ENSSSCG00000039705	-	89	40.794	ENSSLDG00000023005	apex1	95	39.274	Seriola_lalandi_dorsalis
ENSSSCG00000039705	-	99	42.282	ENSSPUG00000000531	APEX1	99	42.282	Sphenodon_punctatus
ENSSSCG00000039705	-	89	41.155	ENSSPAG00000000458	apex1	94	40.333	Stegastes_partitus
ENSSSCG00000039705	-	69	43.094	ENSTGUG00000014378	APEX1	74	43.094	Taeniopygia_guttata
ENSSSCG00000039705	-	89	39.711	ENSTRUG00000004268	apex1	90	37.624	Takifugu_rubripes
ENSSSCG00000039705	-	98	39.203	ENSTNIG00000005778	apex1	95	39.203	Tetraodon_nigroviridis
ENSSSCG00000039705	-	96	52.903	ENSTBEG00000006405	APEX1	100	51.852	Tupaia_belangeri
ENSSSCG00000039705	-	79	60.331	ENSTTRG00000007860	APEX1	100	60.331	Tursiops_truncatus
ENSSSCG00000039705	-	99	58.940	ENSUAMG00000010457	APEX1	96	57.419	Ursus_americanus
ENSSSCG00000039705	-	99	58.940	ENSUMAG00000009178	APEX1	96	57.419	Ursus_maritimus
ENSSSCG00000039705	-	79	59.336	ENSVPAG00000005083	APEX1	100	59.336	Vicugna_pacos
ENSSSCG00000039705	-	92	59.859	ENSVVUG00000009010	APEX1	93	59.272	Vulpes_vulpes
ENSSSCG00000039705	-	86	41.573	ENSXETG00000024773	apex1	91	39.189	Xenopus_tropicalis
ENSSSCG00000039705	-	89	42.960	ENSXCOG00000015233	apex1	95	40.594	Xiphophorus_couchianus
ENSSSCG00000039705	-	89	42.960	ENSXMAG00000006195	apex1	95	40.594	Xiphophorus_maculatus