EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000039915 (Gene tree)
Gene ID: 110256692
Gene Symbol: -
Alias: -
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 31601 bases
Position: chr14:7405818-7437418
Accession: 110256692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000042168	R3H	PF01424.22	1.6e-15	1	1
ENSSSCP00000034267	R3H	PF01424.22	1.7e-15	1	1
ENSSSCP00000057169	R3H	PF01424.22	1.7e-15	1	1
ENSSSCP00000036319	R3H	PF01424.22	2.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000050239	-	4086	XM_021073022	ENSSSCP00000034267	474 (aa)	XP_020928681	A0A286ZRR9
ENSSSCT00000053430	-	4123	-	ENSSSCP00000057169	486 (aa)	-	A0A287BM77
ENSSSCT00000056352	-	4431	-	ENSSSCP00000042168	473 (aa)	-	A0A287AE53
ENSSSCT00000061075	-	4889	-	ENSSSCP00000036319	438 (aa)	-	A0A286ZXS4

Gene Model

Click here to download ENSSSCG00000039915's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000039915's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000039915	-	97	91.304	ENSSSCG00000037347	-	95	91.304

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000039915	-	98	79.095	ENSG00000104679	R3HCC1	100	100.000	Homo_sapiens
ENSSSCG00000039915	-	64	44.643	ENSAPOG00000003616	r3hcc1	91	30.858	Acanthochromis_polyacanthus
ENSSSCG00000039915	-	99	80.761	ENSAMEG00000002963	R3HCC1	98	80.550	Ailuropoda_melanoleuca
ENSSSCG00000039915	-	90	30.472	ENSACIG00000017144	r3hcc1	84	38.889	Amphilophus_citrinellus
ENSSSCG00000039915	-	89	34.171	ENSAOCG00000003945	r3hcc1	97	33.570	Amphiprion_ocellaris
ENSSSCG00000039915	-	89	33.166	ENSAPEG00000003613	r3hcc1	68	44.295	Amphiprion_percula
ENSSSCG00000039915	-	90	50.224	ENSACAG00000016627	R3HCC1	96	49.890	Anolis_carolinensis
ENSSSCG00000039915	-	94	81.081	ENSANAG00000036169	R3HCC1	96	81.081	Aotus_nancymaae
ENSSSCG00000039915	-	95	84.187	ENSBTAG00000025830	R3HCC1	100	82.700	Bos_taurus
ENSSSCG00000039915	-	93	79.638	ENSCJAG00000020118	R3HCC1	99	71.396	Callithrix_jacchus
ENSSSCG00000039915	-	95	78.795	ENSCAFG00000009210	R3HCC1	100	77.440	Canis_familiaris
ENSSSCG00000039915	-	84	74.242	ENSCAFG00020012870	R3HCC1	92	73.990	Canis_lupus_dingo
ENSSSCG00000039915	-	93	77.293	ENSCHIG00000009107	R3HCC1	100	77.293	Capra_hircus
ENSSSCG00000039915	-	94	83.559	ENSTSYG00000000511	R3HCC1	78	83.559	Carlito_syrichta
ENSSSCG00000039915	-	89	57.407	ENSCAPG00000015813	R3HCC1	99	56.845	Cavia_aperea
ENSSSCG00000039915	-	92	65.116	ENSCPOG00000009696	R3HCC1	99	64.842	Cavia_porcellus
ENSSSCG00000039915	-	98	78.664	ENSCCAG00000037811	R3HCC1	96	78.664	Cebus_capucinus
ENSSSCG00000039915	-	99	79.104	ENSCATG00000032971	R3HCC1	94	79.318	Cercocebus_atys
ENSSSCG00000039915	-	93	74.429	ENSCLAG00000015556	R3HCC1	89	71.983	Chinchilla_lanigera
ENSSSCG00000039915	-	98	79.095	ENSCSAG00000016250	R3HCC1	96	79.310	Chlorocebus_sabaeus
ENSSSCG00000039915	-	93	76.818	ENSCHOG00000000396	R3HCC1	96	76.818	Choloepus_hoffmanni
ENSSSCG00000039915	-	98	78.879	ENSCANG00000029441	R3HCC1	98	76.709	Colobus_angolensis_palliatus
ENSSSCG00000039915	-	92	64.523	ENSCGRG00001014977	R3hcc1	99	64.523	Cricetulus_griseus_chok1gshd
ENSSSCG00000039915	-	92	64.523	ENSCGRG00000004454	R3hcc1	99	64.523	Cricetulus_griseus_crigri
ENSSSCG00000039915	-	89	33.747	ENSCSEG00000005748	r3hcc1	99	32.414	Cynoglossus_semilaevis
ENSSSCG00000039915	-	80	32.323	ENSCVAG00000002640	r3hcc1	98	31.566	Cyprinodon_variegatus
ENSSSCG00000039915	-	94	80.856	ENSDNOG00000007168	R3HCC1	93	80.856	Dasypus_novemcinctus
ENSSSCG00000039915	-	92	65.762	ENSDORG00000026365	R3hcc1	99	65.328	Dipodomys_ordii
ENSSSCG00000039915	-	96	68.860	ENSETEG00000001147	R3HCC1	98	69.507	Echinops_telfairi
ENSSSCG00000039915	-	94	83.857	ENSEASG00005018782	R3HCC1	81	83.857	Equus_asinus_asinus
ENSSSCG00000039915	-	95	83.111	ENSECAG00000025013	R3HCC1	99	83.632	Equus_caballus
ENSSSCG00000039915	-	94	76.854	ENSEEUG00000011918	R3HCC1	98	76.404	Erinaceus_europaeus
ENSSSCG00000039915	-	95	36.117	ENSELUG00000023650	r3hcc1	76	47.059	Esox_lucius
ENSSSCG00000039915	-	97	81.385	ENSFCAG00000012395	R3HCC1	99	82.040	Felis_catus
ENSSSCG00000039915	-	92	66.161	ENSFDAG00000001572	R3HCC1	98	66.161	Fukomys_damarensis
ENSSSCG00000039915	-	62	37.423	ENSGMOG00000017590	-	88	37.423	Gadus_morhua
ENSSSCG00000039915	-	90	35.099	ENSGAFG00000008747	-	91	35.541	Gambusia_affinis
ENSSSCG00000039915	-	94	34.725	ENSGACG00000008447	r3hcc1	100	33.626	Gasterosteus_aculeatus
ENSSSCG00000039915	-	98	79.310	ENSGGOG00000013817	R3HCC1	99	79.634	Gorilla_gorilla
ENSSSCG00000039915	-	97	68.103	ENSHGLG00000010517	R3HCC1	96	68.058	Heterocephalus_glaber_female
ENSSSCG00000039915	-	97	68.103	ENSHGLG00100006388	R3HCC1	96	68.058	Heterocephalus_glaber_male
ENSSSCG00000039915	-	90	33.255	ENSHCOG00000011745	r3hcc1	94	34.253	Hippocampus_comes
ENSSSCG00000039915	-	95	34.812	ENSIPUG00000024504	r3hcc1	92	35.619	Ictalurus_punctatus
ENSSSCG00000039915	-	93	68.694	ENSSTOG00000027130	R3HCC1	96	68.527	Ictidomys_tridecemlineatus
ENSSSCG00000039915	-	92	69.063	ENSJJAG00000013075	R3hcc1	99	69.717	Jaculus_jaculus
ENSSSCG00000039915	-	89	34.063	ENSKMAG00000000286	r3hcc1	98	32.706	Kryptolebias_marmoratus
ENSSSCG00000039915	-	90	39.868	ENSLACG00000011894	R3HCC1	97	38.987	Latimeria_chalumnae
ENSSSCG00000039915	-	90	34.921	ENSLOCG00000015442	r3hcc1	99	34.679	Lepisosteus_oculatus
ENSSSCG00000039915	-	96	70.800	ENSLAFG00000016137	R3HCC1	99	70.400	Loxodonta_africana
ENSSSCG00000039915	-	98	79.526	ENSMFAG00000032894	R3HCC1	94	79.741	Macaca_fascicularis
ENSSSCG00000039915	-	99	78.891	ENSMMUG00000016655	R3HCC1	96	79.104	Macaca_mulatta
ENSSSCG00000039915	-	99	78.678	ENSMNEG00000043283	R3HCC1	99	72.540	Macaca_nemestrina
ENSSSCG00000039915	-	98	79.741	ENSMLEG00000030147	R3HCC1	96	79.957	Mandrillus_leucophaeus
ENSSSCG00000039915	-	89	32.203	ENSMAMG00000018146	r3hcc1	99	33.176	Mastacembelus_armatus
ENSSSCG00000039915	-	93	46.916	ENSMGAG00000001356	R3HCC1	93	46.841	Meleagris_gallopavo
ENSSSCG00000039915	-	92	64.894	ENSMAUG00000016096	R3hcc1	99	65.745	Mesocricetus_auratus
ENSSSCG00000039915	-	95	78.271	ENSMICG00000011146	R3HCC1	95	78.348	Microcebus_murinus
ENSSSCG00000039915	-	92	63.636	ENSMOCG00000018508	R3hcc1	99	63.017	Microtus_ochrogaster
ENSSSCG00000039915	-	91	51.111	ENSMODG00000016809	-	100	50.554	Monodelphis_domestica
ENSSSCG00000039915	-	89	31.311	ENSMALG00000000731	r3hcc1	98	31.354	Monopterus_albus
ENSSSCG00000039915	-	93	62.348	MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.514	Mus_caroli
ENSSSCG00000039915	-	93	61.943	ENSMUSG00000034194	R3hcc1	99	59.312	Mus_musculus
ENSSSCG00000039915	-	93	60.400	MGP_PahariEiJ_G0030484	R3hcc1	84	75.449	Mus_pahari
ENSSSCG00000039915	-	93	61.569	MGP_SPRETEiJ_G0020359	R3hcc1	99	58.954	Mus_spretus
ENSSSCG00000039915	-	99	81.064	ENSMPUG00000003457	R3HCC1	93	80.851	Mustela_putorius_furo
ENSSSCG00000039915	-	99	78.013	ENSMLUG00000000266	R3HCC1	98	79.193	Myotis_lucifugus
ENSSSCG00000039915	-	92	71.302	ENSNGAG00000016747	R3hcc1	98	70.861	Nannospalax_galili
ENSSSCG00000039915	-	91	77.622	ENSNLEG00000015944	R3HCC1	92	78.089	Nomascus_leucogenys
ENSSSCG00000039915	-	93	60.360	ENSMEUG00000010587	R3HCC1	99	60.045	Notamacropus_eugenii
ENSSSCG00000039915	-	96	69.063	ENSOPRG00000013390	R3HCC1	97	69.623	Ochotona_princeps
ENSSSCG00000039915	-	91	67.024	ENSODEG00000007529	R3HCC1	99	67.804	Octodon_degus
ENSSSCG00000039915	-	93	58.170	ENSOANG00000013877	R3HCC1	97	60.044	Ornithorhynchus_anatinus
ENSSSCG00000039915	-	94	72.870	ENSOCUG00000023554	R3HCC1	87	72.566	Oryctolagus_cuniculus
ENSSSCG00000039915	-	67	41.304	ENSORLG00000016816	r3hcc1	73	44.586	Oryzias_latipes
ENSSSCG00000039915	-	90	33.584	ENSORLG00020012005	r3hcc1	99	33.172	Oryzias_latipes_hni
ENSSSCG00000039915	-	90	33.333	ENSORLG00015007018	r3hcc1	99	32.692	Oryzias_latipes_hsok
ENSSSCG00000039915	-	90	34.963	ENSOMEG00000000816	r3hcc1	99	33.492	Oryzias_melastigma
ENSSSCG00000039915	-	94	75.450	ENSOGAG00000001291	R3HCC1	92	75.283	Otolemur_garnettii
ENSSSCG00000039915	-	95	82.405	ENSOARG00000010146	R3HCC1	98	82.483	Ovis_aries
ENSSSCG00000039915	-	98	79.095	ENSPPAG00000033165	R3HCC1	99	79.634	Pan_paniscus
ENSSSCG00000039915	-	92	82.028	ENSPPRG00000002522	R3HCC1	99	82.719	Panthera_pardus
ENSSSCG00000039915	-	92	80.446	ENSPTIG00000011230	R3HCC1	96	81.188	Panthera_tigris_altaica
ENSSSCG00000039915	-	97	80.043	ENSPTRG00000020076	R3HCC1	96	80.260	Pan_troglodytes
ENSSSCG00000039915	-	98	79.526	ENSPANG00000000453	R3HCC1	96	79.741	Papio_anubis
ENSSSCG00000039915	-	90	37.500	ENSPKIG00000014426	-	95	37.250	Paramormyrops_kingsleyae
ENSSSCG00000039915	-	90	37.037	ENSPKIG00000020397	-	96	36.658	Paramormyrops_kingsleyae
ENSSSCG00000039915	-	92	50.109	ENSPSIG00000017664	R3HCC1	98	48.276	Pelodiscus_sinensis
ENSSSCG00000039915	-	93	64.815	ENSPEMG00000007118	R3hcc1	100	64.815	Peromyscus_maniculatus_bairdii
ENSSSCG00000039915	-	95	52.326	ENSPCIG00000022718	-	89	53.226	Phascolarctos_cinereus
ENSSSCG00000039915	-	90	34.633	ENSPFOG00000022301	r3hcc1	90	33.864	Poecilia_formosa
ENSSSCG00000039915	-	90	34.091	ENSPLAG00000010794	r3hcc1	90	34.318	Poecilia_latipinna
ENSSSCG00000039915	-	90	34.633	ENSPMEG00000022515	r3hcc1	90	33.864	Poecilia_mexicana
ENSSSCG00000039915	-	90	34.325	ENSPREG00000000713	r3hcc1	90	35.000	Poecilia_reticulata
ENSSSCG00000039915	-	92	78.412	ENSPPYG00000018436	R3HCC1	99	78.908	Pongo_abelii
ENSSSCG00000039915	-	73	86.093	ENSPCAG00000012229	R3HCC1	74	86.093	Procavia_capensis
ENSSSCG00000039915	-	93	77.828	ENSPCOG00000027554	R3HCC1	100	77.828	Propithecus_coquereli
ENSSSCG00000039915	-	96	80.396	ENSPVAG00000009829	R3HCC1	97	81.306	Pteropus_vampyrus
ENSSSCG00000039915	-	60	44.444	ENSPNAG00000023875	r3hcc1	75	44.444	Pygocentrus_nattereri
ENSSSCG00000039915	-	94	62.978	ENSRNOG00000016777	AABR07018321.1	83	63.821	Rattus_norvegicus
ENSSSCG00000039915	-	92	81.007	ENSRBIG00000028045	R3HCC1	99	81.007	Rhinopithecus_bieti
ENSSSCG00000039915	-	99	79.531	ENSRROG00000031126	R3HCC1	94	79.318	Rhinopithecus_roxellana
ENSSSCG00000039915	-	92	78.851	ENSSBOG00000022590	R3HCC1	99	78.851	Saimiri_boliviensis_boliviensis
ENSSSCG00000039915	-	93	54.545	ENSSHAG00000016526	-	99	54.545	Sarcophilus_harrisii
ENSSSCG00000039915	-	89	39.086	ENSSFOG00015013507	r3hcc1	98	37.469	Scleropages_formosus
ENSSSCG00000039915	-	89	33.493	ENSSMAG00000008647	r3hcc1	98	31.935	Scophthalmus_maximus
ENSSSCG00000039915	-	62	48.855	ENSSDUG00000022786	r3hcc1	71	45.890	Seriola_dumerili
ENSSSCG00000039915	-	65	46.853	ENSSLDG00000019031	r3hcc1	71	45.890	Seriola_lalandi_dorsalis
ENSSSCG00000039915	-	65	82.517	ENSSARG00000013514	-	70	82.517	Sorex_araneus
ENSSSCG00000039915	-	89	32.710	ENSSPAG00000013497	r3hcc1	97	32.373	Stegastes_partitus
ENSSSCG00000039915	-	89	32.506	ENSTRUG00000015880	r3hcc1	98	32.394	Takifugu_rubripes
ENSSSCG00000039915	-	96	80.306	ENSTTRG00000012247	R3HCC1	99	80.306	Tursiops_truncatus
ENSSSCG00000039915	-	93	80.317	ENSUAMG00000007344	R3HCC1	100	80.090	Ursus_americanus
ENSSSCG00000039915	-	98	78.788	ENSVVUG00000005056	R3HCC1	98	80.222	Vulpes_vulpes
ENSSSCG00000039915	-	89	34.739	ENSXCOG00000017626	r3hcc1	89	34.752	Xiphophorus_couchianus
ENSSSCG00000039915	-	90	34.763	ENSXMAG00000018375	r3hcc1	91	34.901	Xiphophorus_maculatus