EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000040060 (Gene tree)
Gene ID: 100154728
Gene Symbol: -
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 4665 bases
Position: chr7:78450381-78455045
Accession: 100154728
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000059451	Exo_endo_phos	PF03372.23	7.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000059621	-	3569	XM_021098038	ENSSSCP00000059451	318 (aa)	XP_020953697	A0A287BTC2

Gene Model

Click here to download ENSSSCG00000040060's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000040060's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000040060	-	100	57.407	ENSSSCG00000039705	-	100	57.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000040060	-	100	94.340	ENSG00000100823	APEX1	100	94.340	Homo_sapiens
ENSSSCG00000040060	-	88	69.176	ENSAPOG00000017002	apex1	93	68.182	Acanthochromis_polyacanthus
ENSSSCG00000040060	-	100	97.484	ENSAMEG00000005418	APEX1	100	97.484	Ailuropoda_melanoleuca
ENSSSCG00000040060	-	87	71.377	ENSACIG00000010653	apex1	96	69.580	Amphilophus_citrinellus
ENSSSCG00000040060	-	87	69.565	ENSAOCG00000009649	apex1	99	65.300	Amphiprion_ocellaris
ENSSSCG00000040060	-	87	69.565	ENSAPEG00000021453	apex1	99	65.300	Amphiprion_percula
ENSSSCG00000040060	-	99	66.984	ENSATEG00000002883	apex1	97	66.984	Anabas_testudineus
ENSSSCG00000040060	-	100	70.186	ENSACAG00000008099	APEX1	100	70.186	Anolis_carolinensis
ENSSSCG00000040060	-	100	94.654	ENSANAG00000030117	APEX1	100	94.654	Aotus_nancymaae
ENSSSCG00000040060	-	87	71.377	ENSACLG00000018441	apex1	99	66.981	Astatotilapia_calliptera
ENSSSCG00000040060	-	100	65.312	ENSAMXG00000034699	apex1	100	64.062	Astyanax_mexicanus
ENSSSCG00000040060	-	100	95.597	ENSBTAG00000002745	APEX1	100	95.597	Bos_taurus
ENSSSCG00000040060	-	80	44.922	WBGene00001372	exo-3	88	44.922	Caenorhabditis_elegans
ENSSSCG00000040060	-	100	95.283	ENSCJAG00000009726	APEX1	100	95.283	Callithrix_jacchus
ENSSSCG00000040060	-	100	95.283	ENSCAFG00000032033	APEX1	100	95.283	Canis_familiaris
ENSSSCG00000040060	-	100	95.283	ENSCAFG00020014377	-	100	95.283	Canis_lupus_dingo
ENSSSCG00000040060	-	54	91.860	ENSCAFG00020023002	-	96	91.860	Canis_lupus_dingo
ENSSSCG00000040060	-	98	76.923	ENSCHIG00000014537	-	99	76.923	Capra_hircus
ENSSSCG00000040060	-	100	95.597	ENSCHIG00000007298	-	100	95.597	Capra_hircus
ENSSSCG00000040060	-	100	94.340	ENSTSYG00000034813	APEX1	100	94.340	Carlito_syrichta
ENSSSCG00000040060	-	85	88.930	ENSCAPG00000016235	APEX1	91	97.458	Cavia_aperea
ENSSSCG00000040060	-	100	94.654	ENSCPOG00000030909	APEX1	100	94.654	Cavia_porcellus
ENSSSCG00000040060	-	100	82.390	ENSCCAG00000031931	-	100	82.390	Cebus_capucinus
ENSSSCG00000040060	-	100	95.283	ENSCCAG00000033056	-	100	95.283	Cebus_capucinus
ENSSSCG00000040060	-	100	94.025	ENSCATG00000015580	APEX1	100	94.025	Cercocebus_atys
ENSSSCG00000040060	-	100	94.654	ENSCLAG00000001002	APEX1	100	94.654	Chinchilla_lanigera
ENSSSCG00000040060	-	100	93.711	ENSCSAG00000016685	-	100	93.711	Chlorocebus_sabaeus
ENSSSCG00000040060	-	100	93.711	ENSCSAG00000016670	-	100	93.711	Chlorocebus_sabaeus
ENSSSCG00000040060	-	100	70.846	ENSCPBG00000009567	APEX1	100	70.846	Chrysemys_picta_bellii
ENSSSCG00000040060	-	98	52.532	ENSCING00000008137	-	84	58.113	Ciona_intestinalis
ENSSSCG00000040060	-	94	49.498	ENSCSAVG00000007144	-	100	52.124	Ciona_savignyi
ENSSSCG00000040060	-	100	94.340	ENSCANG00000030726	APEX1	100	94.340	Colobus_angolensis_palliatus
ENSSSCG00000040060	-	100	91.509	ENSCGRG00001017046	Apex1	100	91.509	Cricetulus_griseus_chok1gshd
ENSSSCG00000040060	-	100	91.509	ENSCGRG00000008984	Apex1	100	91.509	Cricetulus_griseus_crigri
ENSSSCG00000040060	-	99	64.465	ENSCSEG00000017499	apex1	99	65.094	Cynoglossus_semilaevis
ENSSSCG00000040060	-	87	71.739	ENSCVAG00000022075	apex1	99	66.139	Cyprinodon_variegatus
ENSSSCG00000040060	-	100	65.409	ENSDARG00000045843	apex1	100	65.409	Danio_rerio
ENSSSCG00000040060	-	100	89.937	ENSDNOG00000042234	APEX1	95	89.937	Dasypus_novemcinctus
ENSSSCG00000040060	-	100	95.283	ENSDORG00000001616	Apex1	100	95.283	Dipodomys_ordii
ENSSSCG00000040060	-	100	93.396	ENSETEG00000004855	-	100	93.396	Echinops_telfairi
ENSSSCG00000040060	-	75	64.854	ENSEBUG00000000622	-	92	64.854	Eptatretus_burgeri
ENSSSCG00000040060	-	100	96.226	ENSEASG00005017489	APEX1	74	96.226	Equus_asinus_asinus
ENSSSCG00000040060	-	100	96.226	ENSECAG00000022325	APEX1	82	96.226	Equus_caballus
ENSSSCG00000040060	-	91	94.097	ENSEEUG00000012569	APEX1	100	94.097	Erinaceus_europaeus
ENSSSCG00000040060	-	100	65.723	ENSELUG00000021706	apex1	100	65.723	Esox_lucius
ENSSSCG00000040060	-	100	96.226	ENSFCAG00000030869	APEX1	100	96.226	Felis_catus
ENSSSCG00000040060	-	100	93.711	ENSFDAG00000006120	APEX1	100	93.711	Fukomys_damarensis
ENSSSCG00000040060	-	99	67.722	ENSFHEG00000009031	apex1	83	67.722	Fundulus_heteroclitus
ENSSSCG00000040060	-	99	62.264	ENSGMOG00000007943	apex1	99	62.025	Gadus_morhua
ENSSSCG00000040060	-	99	67.722	ENSGAFG00000005311	apex1	99	67.722	Gambusia_affinis
ENSSSCG00000040060	-	99	65.300	ENSGACG00000019497	apex1	99	69.549	Gasterosteus_aculeatus
ENSSSCG00000040060	-	100	70.533	ENSGAGG00000014999	APEX1	100	70.533	Gopherus_agassizii
ENSSSCG00000040060	-	100	94.654	ENSGGOG00000002128	APEX1	100	94.654	Gorilla_gorilla
ENSSSCG00000040060	-	99	65.823	ENSHBUG00000005894	apex1	99	65.823	Haplochromis_burtoni
ENSSSCG00000040060	-	100	95.597	ENSHGLG00000002848	APEX1	100	95.597	Heterocephalus_glaber_female
ENSSSCG00000040060	-	100	95.597	ENSHGLG00100017878	APEX1	100	95.597	Heterocephalus_glaber_male
ENSSSCG00000040060	-	99	66.981	ENSHCOG00000009961	apex1	99	65.723	Hippocampus_comes
ENSSSCG00000040060	-	100	67.398	ENSIPUG00000005799	apex1	100	66.144	Ictalurus_punctatus
ENSSSCG00000040060	-	100	93.711	ENSSTOG00000010096	APEX1	100	93.711	Ictidomys_tridecemlineatus
ENSSSCG00000040060	-	100	94.969	ENSJJAG00000012067	-	100	94.969	Jaculus_jaculus
ENSSSCG00000040060	-	100	85.220	ENSJJAG00000003660	-	100	85.220	Jaculus_jaculus
ENSSSCG00000040060	-	94	85.906	ENSJJAG00000020465	-	96	85.906	Jaculus_jaculus
ENSSSCG00000040060	-	87	71.739	ENSKMAG00000021171	apex1	99	66.139	Kryptolebias_marmoratus
ENSSSCG00000040060	-	88	67.742	ENSLBEG00000010248	apex1	99	64.353	Labrus_bergylta
ENSSSCG00000040060	-	100	66.875	ENSLACG00000008617	APEX1	100	66.352	Latimeria_chalumnae
ENSSSCG00000040060	-	100	65.839	ENSLOCG00000015516	apex1	99	65.409	Lepisosteus_oculatus
ENSSSCG00000040060	-	100	92.453	ENSLAFG00000021872	APEX1	100	92.453	Loxodonta_africana
ENSSSCG00000040060	-	100	94.025	ENSMFAG00000002565	APEX1	100	94.025	Macaca_fascicularis
ENSSSCG00000040060	-	100	94.025	ENSMMUG00000048039	APEX1	100	94.025	Macaca_mulatta
ENSSSCG00000040060	-	100	94.025	ENSMNEG00000036944	APEX1	100	94.025	Macaca_nemestrina
ENSSSCG00000040060	-	100	94.025	ENSMLEG00000042125	APEX1	100	94.025	Mandrillus_leucophaeus
ENSSSCG00000040060	-	93	66.139	ENSMAMG00000023526	apex1	99	66.456	Mastacembelus_armatus
ENSSSCG00000040060	-	87	71.377	ENSMZEG00005014187	apex1	99	66.981	Maylandia_zebra
ENSSSCG00000040060	-	100	92.138	ENSMAUG00000013994	Apex1	100	92.138	Mesocricetus_auratus
ENSSSCG00000040060	-	100	95.283	ENSMICG00000043554	APEX1	100	95.283	Microcebus_murinus
ENSSSCG00000040060	-	100	93.082	ENSMOCG00000013721	Apex1	100	93.082	Microtus_ochrogaster
ENSSSCG00000040060	-	91	63.754	ENSMMOG00000010031	apex1	97	61.755	Mola_mola
ENSSSCG00000040060	-	100	83.750	ENSMODG00000007125	APEX1	100	84.375	Monodelphis_domestica
ENSSSCG00000040060	-	88	63.441	ENSMALG00000011699	apex1	77	62.587	Monopterus_albus
ENSSSCG00000040060	-	99	94.953	MGP_CAROLIEiJ_G0019209	Apex1	99	94.953	Mus_caroli
ENSSSCG00000040060	-	100	95.597	ENSMUSG00000035960	Apex1	100	95.597	Mus_musculus
ENSSSCG00000040060	-	100	94.654	MGP_PahariEiJ_G0030232	Apex1	100	94.654	Mus_pahari
ENSSSCG00000040060	-	100	95.597	MGP_SPRETEiJ_G0020101	Apex1	100	95.597	Mus_spretus
ENSSSCG00000040060	-	100	95.312	ENSMLUG00000028957	APEX1	100	95.000	Myotis_lucifugus
ENSSSCG00000040060	-	100	70.126	ENSNGAG00000021748	-	99	70.126	Nannospalax_galili
ENSSSCG00000040060	-	100	94.340	ENSNGAG00000002725	-	100	94.340	Nannospalax_galili
ENSSSCG00000040060	-	87	71.014	ENSNBRG00000005334	apex1	91	66.667	Neolamprologus_brichardi
ENSSSCG00000040060	-	100	94.340	ENSNLEG00000010839	APEX1	100	94.340	Nomascus_leucogenys
ENSSSCG00000040060	-	100	86.478	ENSMEUG00000014519	APEX1	100	84.953	Notamacropus_eugenii
ENSSSCG00000040060	-	100	93.396	ENSOPRG00000014029	APEX1	100	92.767	Ochotona_princeps
ENSSSCG00000040060	-	97	76.375	ENSODEG00000004777	-	99	76.375	Octodon_degus
ENSSSCG00000040060	-	100	95.912	ENSODEG00000001703	-	100	95.912	Octodon_degus
ENSSSCG00000040060	-	100	71.914	ENSODEG00000006583	-	100	71.914	Octodon_degus
ENSSSCG00000040060	-	87	71.223	ENSONIG00000012089	apex1	99	66.456	Oreochromis_niloticus
ENSSSCG00000040060	-	90	83.509	ENSOANG00000008836	APEX1	80	78.086	Ornithorhynchus_anatinus
ENSSSCG00000040060	-	100	94.340	ENSOCUG00000005022	APEX1	100	94.340	Oryctolagus_cuniculus
ENSSSCG00000040060	-	99	66.981	ENSORLG00000012378	apex1	99	66.981	Oryzias_latipes
ENSSSCG00000040060	-	99	66.981	ENSORLG00020021371	apex1	99	66.981	Oryzias_latipes_hni
ENSSSCG00000040060	-	99	66.981	ENSORLG00015020089	apex1	99	66.981	Oryzias_latipes_hsok
ENSSSCG00000040060	-	99	66.667	ENSOMEG00000018876	apex1	99	67.296	Oryzias_melastigma
ENSSSCG00000040060	-	100	94.340	ENSOGAG00000013335	-	100	94.340	Otolemur_garnettii
ENSSSCG00000040060	-	98	83.974	ENSOGAG00000029355	-	100	83.974	Otolemur_garnettii
ENSSSCG00000040060	-	97	91.234	ENSOARG00000001876	-	100	91.234	Ovis_aries
ENSSSCG00000040060	-	99	80.696	ENSOARG00000014424	-	100	80.696	Ovis_aries
ENSSSCG00000040060	-	100	94.654	ENSOARG00000019740	-	100	94.654	Ovis_aries
ENSSSCG00000040060	-	100	94.654	ENSPPAG00000038760	APEX1	100	94.654	Pan_paniscus
ENSSSCG00000040060	-	100	95.912	ENSPPRG00000011794	APEX1	100	95.912	Panthera_pardus
ENSSSCG00000040060	-	100	96.226	ENSPTIG00000014829	APEX1	100	96.226	Panthera_tigris_altaica
ENSSSCG00000040060	-	100	94.654	ENSPTRG00000006093	APEX1	100	94.654	Pan_troglodytes
ENSSSCG00000040060	-	100	94.025	ENSPANG00000022757	APEX1	100	94.025	Papio_anubis
ENSSSCG00000040060	-	87	68.841	ENSPKIG00000003504	apex1	100	64.486	Paramormyrops_kingsleyae
ENSSSCG00000040060	-	76	67.078	ENSPMGG00000016596	apex1	73	67.078	Periophthalmus_magnuspinnatus
ENSSSCG00000040060	-	100	94.340	ENSPEMG00000019097	Apex1	100	94.340	Peromyscus_maniculatus_bairdii
ENSSSCG00000040060	-	94	65.449	ENSPMAG00000007275	-	93	68.116	Petromyzon_marinus
ENSSSCG00000040060	-	100	83.699	ENSPCIG00000023274	APEX1	100	85.358	Phascolarctos_cinereus
ENSSSCG00000040060	-	99	67.722	ENSPFOG00000004178	apex1	99	67.722	Poecilia_formosa
ENSSSCG00000040060	-	99	67.405	ENSPLAG00000012779	apex1	99	67.405	Poecilia_latipinna
ENSSSCG00000040060	-	99	67.722	ENSPMEG00000019623	apex1	99	67.722	Poecilia_mexicana
ENSSSCG00000040060	-	99	67.089	ENSPREG00000014298	apex1	99	67.089	Poecilia_reticulata
ENSSSCG00000040060	-	100	94.340	ENSPPYG00000005565	APEX1	100	94.340	Pongo_abelii
ENSSSCG00000040060	-	100	90.252	ENSPCAG00000010376	APEX1	100	90.252	Procavia_capensis
ENSSSCG00000040060	-	100	95.283	ENSPCOG00000021564	APEX1	100	95.283	Propithecus_coquereli
ENSSSCG00000040060	-	100	95.000	ENSPVAG00000010736	APEX1	100	95.000	Pteropus_vampyrus
ENSSSCG00000040060	-	87	71.377	ENSPNYG00000023940	apex1	99	66.981	Pundamilia_nyererei
ENSSSCG00000040060	-	93	65.203	ENSPNAG00000020897	apex1	96	63.729	Pygocentrus_nattereri
ENSSSCG00000040060	-	100	94.654	ENSRNOG00000009663	Apex1	100	94.654	Rattus_norvegicus
ENSSSCG00000040060	-	100	94.025	ENSRBIG00000038325	APEX1	99	94.025	Rhinopithecus_bieti
ENSSSCG00000040060	-	100	80.503	ENSSBOG00000031372	-	100	79.245	Saimiri_boliviensis_boliviensis
ENSSSCG00000040060	-	100	94.969	ENSSBOG00000018921	-	100	94.969	Saimiri_boliviensis_boliviensis
ENSSSCG00000040060	-	100	82.407	ENSSHAG00000013524	APEX1	100	82.407	Sarcophilus_harrisii
ENSSSCG00000040060	-	100	61.950	ENSSFOG00015001948	apex1	100	61.321	Scleropages_formosus
ENSSSCG00000040060	-	87	69.565	ENSSMAG00000013348	apex1	99	65.615	Scophthalmus_maximus
ENSSSCG00000040060	-	99	65.506	ENSSDUG00000016377	apex1	99	65.506	Seriola_dumerili
ENSSSCG00000040060	-	99	66.139	ENSSLDG00000023005	apex1	99	66.139	Seriola_lalandi_dorsalis
ENSSSCG00000040060	-	99	68.139	ENSSPUG00000000531	APEX1	99	68.139	Sphenodon_punctatus
ENSSSCG00000040060	-	99	65.506	ENSSPAG00000000458	apex1	99	64.873	Stegastes_partitus
ENSSSCG00000040060	-	74	59.746	ENSTGUG00000014378	APEX1	100	59.746	Taeniopygia_guttata
ENSSSCG00000040060	-	87	67.754	ENSTRUG00000004268	apex1	95	62.305	Takifugu_rubripes
ENSSSCG00000040060	-	99	63.291	ENSTNIG00000005778	apex1	99	62.975	Tetraodon_nigroviridis
ENSSSCG00000040060	-	100	90.881	ENSTBEG00000006405	APEX1	100	90.881	Tupaia_belangeri
ENSSSCG00000040060	-	74	96.186	ENSTTRG00000007860	APEX1	100	96.186	Tursiops_truncatus
ENSSSCG00000040060	-	100	96.855	ENSUAMG00000010457	APEX1	100	96.855	Ursus_americanus
ENSSSCG00000040060	-	100	96.855	ENSUMAG00000009178	APEX1	100	96.855	Ursus_maritimus
ENSSSCG00000040060	-	74	91.525	ENSVPAG00000005083	APEX1	100	91.525	Vicugna_pacos
ENSSSCG00000040060	-	100	94.654	ENSVVUG00000009010	APEX1	100	94.654	Vulpes_vulpes
ENSSSCG00000040060	-	100	64.706	ENSXETG00000024773	apex1	100	66.667	Xenopus_tropicalis
ENSSSCG00000040060	-	99	67.405	ENSXCOG00000015233	apex1	99	67.405	Xiphophorus_couchianus
ENSSSCG00000040060	-	99	67.405	ENSXMAG00000006195	apex1	99	67.405	Xiphophorus_maculatus