EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000040194 (Gene tree)
Gene ID: 100518351
Gene Symbol: PABPC5
Alias: PABP5
Full Name: polyadenylate-binding protein 5
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 3312 bases
Position: chrX:74142589-74145900
Accession: 100518351
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000049719	RRM_5	PF13893.6	1.1e-11	1	2
ENSSSCP00000049719	RRM_5	PF13893.6	1.1e-11	2	2
ENSSSCP00000049719	RRM_1	PF00076.22	7e-79	1	4
ENSSSCP00000049719	RRM_1	PF00076.22	7e-79	2	4
ENSSSCP00000049719	RRM_1	PF00076.22	7e-79	3	4
ENSSSCP00000049719	RRM_1	PF00076.22	7e-79	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000056151	PABPC5-201	3312	XM_005674568	ENSSSCP00000049719	382 (aa)	XP_005674625	A0A287AZY8

Gene Model

Click here to download ENSSSCG00000040194's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000040194's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000040194	PABPC5	96	67.769	ENSSSCG00000003660	-	58	67.978
ENSSSCG00000040194	PABPC5	96	57.692	ENSSSCG00000009067	PABPC4L	97	57.584
ENSSSCG00000040194	PABPC5	96	60.882	ENSSSCG00000007382	PABPC1L	62	60.955
ENSSSCG00000040194	PABPC5	60	36.709	ENSSSCG00000006618	CELF3	50	35.616
ENSSSCG00000040194	PABPC5	77	36.486	ENSSSCG00000036170	-	51	35.738
ENSSSCG00000040194	PABPC5	53	55.479	ENSSSCG00000033638	-	91	54.930
ENSSSCG00000040194	PABPC5	94	35.802	ENSSSCG00000005130	ELAVL2	89	35.802
ENSSSCG00000040194	PABPC5	98	64.690	ENSSSCG00000006063	PABPC1	69	65.730
ENSSSCG00000040194	PABPC5	78	39.597	ENSSSCG00000036199	-	51	39.262
ENSSSCG00000040194	PABPC5	93	60.204	ENSSSCG00000032167	-	98	59.896
ENSSSCG00000040194	PABPC5	93	60.204	ENSSSCG00000036336	-	98	59.896
ENSSSCG00000040194	PABPC5	70	34.483	ENSSSCG00000001928	-	51	34.524

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000040194	PABPC5	99	96.850	ENSG00000174740	PABPC5	99	96.850	Homo_sapiens
ENSSSCG00000040194	PABPC5	99	97.638	ENSAMEG00000020114	PABPC5	100	97.638	Ailuropoda_melanoleuca
ENSSSCG00000040194	PABPC5	99	96.850	ENSANAG00000005063	PABPC5	99	96.850	Aotus_nancymaae
ENSSSCG00000040194	PABPC5	100	96.859	ENSBTAG00000019942	PABPC5	100	96.859	Bos_taurus
ENSSSCG00000040194	PABPC5	99	96.850	ENSCJAG00000003665	PABPC5	99	96.850	Callithrix_jacchus
ENSSSCG00000040194	PABPC5	100	97.382	ENSCAFG00000017452	PABPC5	100	97.382	Canis_familiaris
ENSSSCG00000040194	PABPC5	100	96.859	ENSCHIG00000019004	PABPC5	100	96.859	Capra_hircus
ENSSSCG00000040194	PABPC5	100	96.335	ENSTSYG00000036351	PABPC5	100	96.335	Carlito_syrichta
ENSSSCG00000040194	PABPC5	99	86.911	ENSCAPG00000010714	PABPC5	100	86.911	Cavia_aperea
ENSSSCG00000040194	PABPC5	100	93.455	ENSCPOG00000002555	PABPC5	100	93.455	Cavia_porcellus
ENSSSCG00000040194	PABPC5	99	96.850	ENSCCAG00000032154	PABPC5	99	96.850	Cebus_capucinus
ENSSSCG00000040194	PABPC5	99	97.113	ENSCATG00000043083	PABPC5	99	97.113	Cercocebus_atys
ENSSSCG00000040194	PABPC5	100	95.288	ENSCLAG00000000647	PABPC5	100	95.288	Chinchilla_lanigera
ENSSSCG00000040194	PABPC5	99	97.113	ENSCSAG00000000065	PABPC5	99	97.113	Chlorocebus_sabaeus
ENSSSCG00000040194	PABPC5	99	97.113	ENSCANG00000011473	PABPC5	99	97.113	Colobus_angolensis_palliatus
ENSSSCG00000040194	PABPC5	100	93.717	ENSCGRG00000018699	Pabpc5	100	93.717	Cricetulus_griseus_crigri
ENSSSCG00000040194	PABPC5	100	77.807	ENSETEG00000011832	PABPC5	100	77.807	Echinops_telfairi
ENSSSCG00000040194	PABPC5	100	97.644	ENSEASG00005014396	PABPC5	100	97.644	Equus_asinus_asinus
ENSSSCG00000040194	PABPC5	100	97.644	ENSECAG00000003452	PABPC5	100	97.644	Equus_caballus
ENSSSCG00000040194	PABPC5	100	97.382	ENSFCAG00000004998	PABPC5	100	97.382	Felis_catus
ENSSSCG00000040194	PABPC5	100	95.812	ENSFDAG00000000126	PABPC5	100	95.812	Fukomys_damarensis
ENSSSCG00000040194	PABPC5	99	96.850	ENSGGOG00000007622	PABPC5	99	96.850	Gorilla_gorilla
ENSSSCG00000040194	PABPC5	95	96.330	ENSJJAG00000011960	Pabpc5	100	96.330	Jaculus_jaculus
ENSSSCG00000040194	PABPC5	99	97.113	ENSMFAG00000024561	PABPC5	99	97.113	Macaca_fascicularis
ENSSSCG00000040194	PABPC5	99	97.113	ENSMMUG00000011562	PABPC5	99	97.113	Macaca_mulatta
ENSSSCG00000040194	PABPC5	99	97.113	ENSMNEG00000037604	PABPC5	99	97.113	Macaca_nemestrina
ENSSSCG00000040194	PABPC5	99	97.113	ENSMLEG00000028318	PABPC5	99	97.113	Mandrillus_leucophaeus
ENSSSCG00000040194	PABPC5	100	95.550	ENSMICG00000041706	PABPC5	100	95.550	Microcebus_murinus
ENSSSCG00000040194	PABPC5	100	95.550	ENSMOCG00000001554	Pabpc5	100	95.550	Microtus_ochrogaster
ENSSSCG00000040194	PABPC5	99	93.158	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	Mus_caroli
ENSSSCG00000040194	PABPC5	99	93.421	ENSMUSG00000034732	Pabpc5	99	93.421	Mus_musculus
ENSSSCG00000040194	PABPC5	100	93.717	MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	Mus_pahari
ENSSSCG00000040194	PABPC5	99	93.421	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	Mus_spretus
ENSSSCG00000040194	PABPC5	100	96.597	ENSMPUG00000018465	PABPC5	100	96.597	Mustela_putorius_furo
ENSSSCG00000040194	PABPC5	100	96.073	ENSMLUG00000008244	PABPC5	100	96.073	Myotis_lucifugus
ENSSSCG00000040194	PABPC5	95	95.872	ENSNGAG00000004371	Pabpc5	100	95.872	Nannospalax_galili
ENSSSCG00000040194	PABPC5	99	96.850	ENSNLEG00000035086	PABPC5	99	96.850	Nomascus_leucogenys
ENSSSCG00000040194	PABPC5	98	97.285	ENSOPRG00000000856	PABPC5	100	97.285	Ochotona_princeps
ENSSSCG00000040194	PABPC5	100	96.597	ENSOCUG00000010919	PABPC5	100	96.597	Oryctolagus_cuniculus
ENSSSCG00000040194	PABPC5	100	95.812	ENSOGAG00000006882	PABPC5	100	95.812	Otolemur_garnettii
ENSSSCG00000040194	PABPC5	100	97.120	ENSOARG00000010260	PABPC5	100	97.120	Ovis_aries
ENSSSCG00000040194	PABPC5	99	96.588	ENSPPAG00000007378	PABPC5	99	96.588	Pan_paniscus
ENSSSCG00000040194	PABPC5	100	97.382	ENSPPRG00000010742	PABPC5	100	97.382	Panthera_pardus
ENSSSCG00000040194	PABPC5	100	97.382	ENSPTIG00000001480	PABPC5	100	97.382	Panthera_tigris_altaica
ENSSSCG00000040194	PABPC5	99	96.850	ENSPTRG00000022078	PABPC5	99	96.850	Pan_troglodytes
ENSSSCG00000040194	PABPC5	99	97.113	ENSPANG00000018282	PABPC5	99	97.113	Papio_anubis
ENSSSCG00000040194	PABPC5	100	94.503	ENSPEMG00000000171	Pabpc5	100	94.503	Peromyscus_maniculatus_bairdii
ENSSSCG00000040194	PABPC5	99	96.850	ENSPPYG00000020526	PABPC5	99	96.850	Pongo_abelii
ENSSSCG00000040194	PABPC5	99	97.455	ENSPCAG00000015577	PABPC5	100	97.455	Procavia_capensis
ENSSSCG00000040194	PABPC5	100	96.335	ENSPCOG00000000676	PABPC5	100	96.335	Propithecus_coquereli
ENSSSCG00000040194	PABPC5	100	97.382	ENSPVAG00000006465	PABPC5	100	97.382	Pteropus_vampyrus
ENSSSCG00000040194	PABPC5	100	93.979	ENSRNOG00000003354	Pabpc5	100	93.979	Rattus_norvegicus
ENSSSCG00000040194	PABPC5	99	97.113	ENSRBIG00000011760	PABPC5	99	97.113	Rhinopithecus_bieti
ENSSSCG00000040194	PABPC5	99	97.113	ENSRROG00000036708	PABPC5	99	97.113	Rhinopithecus_roxellana
ENSSSCG00000040194	PABPC5	99	96.850	ENSSBOG00000008658	PABPC5	99	96.850	Saimiri_boliviensis_boliviensis
ENSSSCG00000040194	PABPC5	100	95.026	ENSSARG00000014012	PABPC5	100	95.026	Sorex_araneus
ENSSSCG00000040194	PABPC5	100	97.644	ENSTBEG00000016482	PABPC5	100	97.644	Tupaia_belangeri
ENSSSCG00000040194	PABPC5	100	97.120	ENSUAMG00000013627	PABPC5	100	97.120	Ursus_americanus
ENSSSCG00000040194	PABPC5	100	96.859	ENSUMAG00000023934	PABPC5	100	96.859	Ursus_maritimus
ENSSSCG00000040194	PABPC5	100	97.644	ENSVPAG00000001063	PABPC5	100	97.644	Vicugna_pacos
ENSSSCG00000040194	PABPC5	100	97.382	ENSVVUG00000013172	PABPC5	100	97.382	Vulpes_vulpes