EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000040825 (Gene tree)
Gene ID: 100151875
Gene Symbol: PYM1
Alias: PYM|WIBG
Full Name: PYM homolog 1%2C exon junction complex associated factor
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 23047 bases
Position: chr5:21306155-21329201
Accession: 100151875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000053084	Mago-bind	PF09282.10	1.2e-13	1	1
ENSSSCP00000033664	Mago-bind	PF09282.10	1.3e-13	1	1
ENSSSCP00000042906	Mago-bind	PF09282.10	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000052685	PYM1-203	1094	XM_005663884	ENSSSCP00000053084	203 (aa)	XP_005663941	A0A287B9S4
ENSSSCT00000042089	PYM1-202	1456	XM_005663885	ENSSSCP00000033664	218 (aa)	XP_005663942	A0A286ZPX7
ENSSSCT00000043664	PYM1-201	3898	-	ENSSSCP00000042906	218 (aa)	-	A0A286ZPX7

Gene Model

Click here to download ENSSSCG00000040825's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000040825's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000040825	PYM1	94	94.764	ENSG00000170473	PYM1	94	94.764	Homo_sapiens
ENSSSCG00000040825	PYM1	99	58.411	ENSAPOG00000023045	pym1	94	58.537	Acanthochromis_polyacanthus
ENSSSCG00000040825	PYM1	92	89.305	ENSAMEG00000003091	PYM1	93	88.830	Ailuropoda_melanoleuca
ENSSSCG00000040825	PYM1	99	58.716	ENSACIG00000012769	pym1	94	60.287	Amphilophus_citrinellus
ENSSSCG00000040825	PYM1	99	58.768	ENSAOCG00000021358	pym1	94	59.314	Amphiprion_ocellaris
ENSSSCG00000040825	PYM1	99	58.768	ENSAPEG00000022679	pym1	94	59.314	Amphiprion_percula
ENSSSCG00000040825	PYM1	99	56.542	ENSATEG00000024022	pym1	94	59.314	Anabas_testudineus
ENSSSCG00000040825	PYM1	94	71.707	ENSACAG00000005714	PYM1	94	71.707	Anolis_carolinensis
ENSSSCG00000040825	PYM1	94	93.717	ENSANAG00000036967	PYM1	94	93.717	Aotus_nancymaae
ENSSSCG00000040825	PYM1	100	56.881	ENSAMXG00000007650	pym1	94	58.738	Astyanax_mexicanus
ENSSSCG00000040825	PYM1	94	95.812	ENSBTAG00000031146	PYM1	94	95.812	Bos_taurus
ENSSSCG00000040825	PYM1	94	93.717	ENSCJAG00000041077	PYM1	94	93.717	Callithrix_jacchus
ENSSSCG00000040825	PYM1	94	95.812	ENSCAFG00000000076	PYM1	94	95.812	Canis_familiaris
ENSSSCG00000040825	PYM1	94	95.812	ENSCAFG00020026099	PYM1	94	95.812	Canis_lupus_dingo
ENSSSCG00000040825	PYM1	94	94.241	ENSCHIG00000026207	PYM1	94	94.241	Capra_hircus
ENSSSCG00000040825	PYM1	94	91.099	ENSTSYG00000000787	PYM1	94	91.099	Carlito_syrichta
ENSSSCG00000040825	PYM1	88	88.827	ENSCAPG00000010374	PYM1	94	88.827	Cavia_aperea
ENSSSCG00000040825	PYM1	94	89.529	ENSCPOG00000031546	PYM1	94	89.529	Cavia_porcellus
ENSSSCG00000040825	PYM1	94	94.241	ENSCCAG00000026187	PYM1	94	94.241	Cebus_capucinus
ENSSSCG00000040825	PYM1	94	94.241	ENSCATG00000018801	PYM1	94	94.241	Cercocebus_atys
ENSSSCG00000040825	PYM1	94	85.864	ENSCLAG00000007964	PYM1	94	85.864	Chinchilla_lanigera
ENSSSCG00000040825	PYM1	89	93.889	ENSCSAG00000005291	PYM1	92	93.889	Chlorocebus_sabaeus
ENSSSCG00000040825	PYM1	98	38.389	ENSCING00000006448	-	93	41.089	Ciona_intestinalis
ENSSSCG00000040825	PYM1	98	39.336	ENSCSAVG00000009805	-	89	39.500	Ciona_savignyi
ENSSSCG00000040825	PYM1	98	85.859	ENSCANG00000019757	-	86	90.526	Colobus_angolensis_palliatus
ENSSSCG00000040825	PYM1	94	94.241	ENSCANG00000020338	-	94	94.241	Colobus_angolensis_palliatus
ENSSSCG00000040825	PYM1	88	74.860	ENSCGRG00001004231	-	93	72.251	Cricetulus_griseus_chok1gshd
ENSSSCG00000040825	PYM1	94	88.482	ENSCGRG00001018051	-	94	88.482	Cricetulus_griseus_chok1gshd
ENSSSCG00000040825	PYM1	88	74.860	ENSCGRG00000018933	-	93	72.251	Cricetulus_griseus_crigri
ENSSSCG00000040825	PYM1	94	88.482	ENSCGRG00000012495	-	94	88.482	Cricetulus_griseus_crigri
ENSSSCG00000040825	PYM1	94	55.500	ENSCSEG00000021531	pym1	94	58.500	Cynoglossus_semilaevis
ENSSSCG00000040825	PYM1	94	60.697	ENSCVAG00000017360	pym1	81	60.417	Cyprinodon_variegatus
ENSSSCG00000040825	PYM1	99	57.500	ENSDARG00000046024	pym1	94	53.140	Danio_rerio
ENSSSCG00000040825	PYM1	94	90.576	ENSDNOG00000048414	PYM1	86	90.576	Dasypus_novemcinctus
ENSSSCG00000040825	PYM1	94	92.147	ENSDORG00000029448	Pym1	94	92.147	Dipodomys_ordii
ENSSSCG00000040825	PYM1	93	33.019	FBgn0034918	Pym	90	32.212	Drosophila_melanogaster
ENSSSCG00000040825	PYM1	89	86.667	ENSETEG00000004461	-	94	86.667	Echinops_telfairi
ENSSSCG00000040825	PYM1	93	90.426	ENSEASG00005002271	PYM1	85	90.426	Equus_asinus_asinus
ENSSSCG00000040825	PYM1	94	94.764	ENSECAG00000011870	PYM1	94	94.764	Equus_caballus
ENSSSCG00000040825	PYM1	96	58.291	ENSELUG00000024250	pym1	94	59.694	Esox_lucius
ENSSSCG00000040825	PYM1	94	93.717	ENSFCAG00000013967	PYM1	94	93.717	Felis_catus
ENSSSCG00000040825	PYM1	94	90.052	ENSFDAG00000006314	PYM1	94	90.052	Fukomys_damarensis
ENSSSCG00000040825	PYM1	94	59.406	ENSFHEG00000005884	pym1	94	59.406	Fundulus_heteroclitus
ENSSSCG00000040825	PYM1	94	56.373	ENSGMOG00000007239	pym1	93	56.373	Gadus_morhua
ENSSSCG00000040825	PYM1	94	70.769	ENSGALG00000046169	PYM1	94	71.500	Gallus_gallus
ENSSSCG00000040825	PYM1	99	60.563	ENSGAFG00000003280	pym1	93	60.199	Gambusia_affinis
ENSSSCG00000040825	PYM1	100	54.854	ENSGACG00000010703	pym1	94	56.410	Gasterosteus_aculeatus
ENSSSCG00000040825	PYM1	92	66.337	ENSGAGG00000001973	PYM1	88	66.337	Gopherus_agassizii
ENSSSCG00000040825	PYM1	94	94.241	ENSGGOG00000043246	PYM1	94	94.241	Gorilla_gorilla
ENSSSCG00000040825	PYM1	94	60.591	ENSHBUG00000012719	pym1	94	60.784	Haplochromis_burtoni
ENSSSCG00000040825	PYM1	94	91.099	ENSHGLG00000017155	PYM1	94	91.099	Heterocephalus_glaber_female
ENSSSCG00000040825	PYM1	94	91.099	ENSHGLG00100015341	PYM1	94	91.099	Heterocephalus_glaber_male
ENSSSCG00000040825	PYM1	99	57.477	ENSHCOG00000007987	pym1	80	57.921	Hippocampus_comes
ENSSSCG00000040825	PYM1	100	58.986	ENSIPUG00000005975	wibga	94	59.709	Ictalurus_punctatus
ENSSSCG00000040825	PYM1	94	93.717	ENSSTOG00000014206	PYM1	94	93.717	Ictidomys_tridecemlineatus
ENSSSCG00000040825	PYM1	94	89.529	ENSJJAG00000013338	Pym1	94	89.529	Jaculus_jaculus
ENSSSCG00000040825	PYM1	99	57.207	ENSKMAG00000006351	pym1	95	56.338	Kryptolebias_marmoratus
ENSSSCG00000040825	PYM1	99	59.615	ENSLBEG00000015707	pym1	94	59.296	Labrus_bergylta
ENSSSCG00000040825	PYM1	89	60.733	ENSLACG00000014398	PYM1	90	60.622	Latimeria_chalumnae
ENSSSCG00000040825	PYM1	94	93.194	ENSLAFG00000002369	PYM1	94	93.194	Loxodonta_africana
ENSSSCG00000040825	PYM1	94	94.241	ENSMFAG00000003048	PYM1	94	94.241	Macaca_fascicularis
ENSSSCG00000040825	PYM1	94	94.241	ENSMMUG00000011002	PYM1	94	94.241	Macaca_mulatta
ENSSSCG00000040825	PYM1	94	94.241	ENSMNEG00000034677	PYM1	94	94.241	Macaca_nemestrina
ENSSSCG00000040825	PYM1	94	94.241	ENSMLEG00000007971	PYM1	94	94.241	Mandrillus_leucophaeus
ENSSSCG00000040825	PYM1	99	57.991	ENSMAMG00000001588	pym1	94	59.524	Mastacembelus_armatus
ENSSSCG00000040825	PYM1	94	60.099	ENSMZEG00005026458	pym1	94	60.294	Maylandia_zebra
ENSSSCG00000040825	PYM1	94	87.958	ENSMAUG00000007318	Pym1	94	87.958	Mesocricetus_auratus
ENSSSCG00000040825	PYM1	94	92.670	ENSMICG00000032962	PYM1	94	92.670	Microcebus_murinus
ENSSSCG00000040825	PYM1	94	87.435	ENSMOCG00000010208	Pym1	94	87.435	Microtus_ochrogaster
ENSSSCG00000040825	PYM1	99	59.512	ENSMMOG00000009301	pym1	92	62.176	Mola_mola
ENSSSCG00000040825	PYM1	99	58.571	ENSMALG00000013496	pym1	94	58.706	Monopterus_albus
ENSSSCG00000040825	PYM1	94	88.482	MGP_CAROLIEiJ_G0015953	Pym1	94	88.482	Mus_caroli
ENSSSCG00000040825	PYM1	94	89.529	ENSMUSG00000064030	Pym1	94	89.529	Mus_musculus
ENSSSCG00000040825	PYM1	94	87.958	MGP_PahariEiJ_G0031131	Pym1	94	87.958	Mus_pahari
ENSSSCG00000040825	PYM1	94	89.529	MGP_SPRETEiJ_G0016778	Pym1	94	89.529	Mus_spretus
ENSSSCG00000040825	PYM1	94	94.764	ENSMPUG00000000931	PYM1	94	94.764	Mustela_putorius_furo
ENSSSCG00000040825	PYM1	94	86.387	ENSMLUG00000003586	PYM1	90	90.608	Myotis_lucifugus
ENSSSCG00000040825	PYM1	89	89.444	ENSNGAG00000019207	Pym1	93	85.417	Nannospalax_galili
ENSSSCG00000040825	PYM1	99	61.321	ENSNBRG00000006951	pym1	94	60.784	Neolamprologus_brichardi
ENSSSCG00000040825	PYM1	94	94.764	ENSNLEG00000017588	PYM1	94	94.764	Nomascus_leucogenys
ENSSSCG00000040825	PYM1	88	79.213	ENSMEUG00000001017	PYM1	93	79.096	Notamacropus_eugenii
ENSSSCG00000040825	PYM1	89	88.889	ENSOPRG00000007797	PYM1	89	88.398	Ochotona_princeps
ENSSSCG00000040825	PYM1	94	91.623	ENSODEG00000004289	PYM1	94	91.623	Octodon_degus
ENSSSCG00000040825	PYM1	94	59.709	ENSONIG00000016740	pym1	94	59.903	Oreochromis_niloticus
ENSSSCG00000040825	PYM1	89	90.000	ENSOCUG00000025969	PYM1	91	82.927	Oryctolagus_cuniculus
ENSSSCG00000040825	PYM1	99	61.792	ENSORLG00000030592	pym1	94	61.386	Oryzias_latipes
ENSSSCG00000040825	PYM1	99	61.215	ENSORLG00020011264	pym1	94	61.275	Oryzias_latipes_hni
ENSSSCG00000040825	PYM1	99	62.559	ENSORLG00015005287	pym1	94	62.189	Oryzias_latipes_hsok
ENSSSCG00000040825	PYM1	99	61.650	ENSOMEG00000022250	pym1	94	60.914	Oryzias_melastigma
ENSSSCG00000040825	PYM1	89	94.444	ENSOGAG00000007038	PYM1	88	94.444	Otolemur_garnettii
ENSSSCG00000040825	PYM1	94	94.764	ENSOARG00000010856	PYM1	94	94.764	Ovis_aries
ENSSSCG00000040825	PYM1	94	94.764	ENSPPAG00000043630	PYM1	94	94.764	Pan_paniscus
ENSSSCG00000040825	PYM1	94	92.147	ENSPPRG00000013243	PYM1	94	92.147	Panthera_pardus
ENSSSCG00000040825	PYM1	94	91.623	ENSPTIG00000017380	PYM1	94	91.623	Panthera_tigris_altaica
ENSSSCG00000040825	PYM1	94	94.764	ENSPTRG00000005067	PYM1	94	94.764	Pan_troglodytes
ENSSSCG00000040825	PYM1	94	93.717	ENSPANG00000009562	PYM1	94	93.717	Papio_anubis
ENSSSCG00000040825	PYM1	100	62.911	ENSPKIG00000006301	pym1	94	62.189	Paramormyrops_kingsleyae
ENSSSCG00000040825	PYM1	89	67.010	ENSPSIG00000003043	PYM1	90	67.010	Pelodiscus_sinensis
ENSSSCG00000040825	PYM1	100	61.244	ENSPMGG00000023161	pym1	94	61.421	Periophthalmus_magnuspinnatus
ENSSSCG00000040825	PYM1	94	86.387	ENSPEMG00000009372	Pym1	94	86.387	Peromyscus_maniculatus_bairdii
ENSSSCG00000040825	PYM1	92	78.495	ENSPCIG00000024658	PYM1	91	78.191	Phascolarctos_cinereus
ENSSSCG00000040825	PYM1	99	60.664	ENSPFOG00000008193	pym1	93	60.804	Poecilia_formosa
ENSSSCG00000040825	PYM1	99	60.190	ENSPLAG00000009228	pym1	93	60.302	Poecilia_latipinna
ENSSSCG00000040825	PYM1	99	60.190	ENSPMEG00000001505	pym1	93	60.302	Poecilia_mexicana
ENSSSCG00000040825	PYM1	89	92.778	ENSPPYG00000004635	PYM1	92	92.778	Pongo_abelii
ENSSSCG00000040825	PYM1	94	93.194	ENSPCOG00000019706	PYM1	94	93.194	Propithecus_coquereli
ENSSSCG00000040825	PYM1	89	95.000	ENSPVAG00000011437	PYM1	92	95.000	Pteropus_vampyrus
ENSSSCG00000040825	PYM1	94	61.084	ENSPNYG00000012871	pym1	94	60.591	Pundamilia_nyererei
ENSSSCG00000040825	PYM1	99	59.174	ENSPNAG00000018833	pym1	94	59.809	Pygocentrus_nattereri
ENSSSCG00000040825	PYM1	92	66.310	ENSRNOG00000049415	AABR07055413.1	91	61.170	Rattus_norvegicus
ENSSSCG00000040825	PYM1	94	83.333	ENSRNOG00000058130	Pym1	94	83.333	Rattus_norvegicus
ENSSSCG00000040825	PYM1	94	89.529	ENSRBIG00000033362	PYM1	94	89.529	Rhinopithecus_bieti
ENSSSCG00000040825	PYM1	94	94.241	ENSRROG00000043620	PYM1	94	94.241	Rhinopithecus_roxellana
ENSSSCG00000040825	PYM1	94	94.241	ENSSBOG00000029393	PYM1	94	94.241	Saimiri_boliviensis_boliviensis
ENSSSCG00000040825	PYM1	93	80.423	ENSSHAG00000008280	PYM1	93	80.423	Sarcophilus_harrisii
ENSSSCG00000040825	PYM1	93	64.249	ENSSFOG00015021475	pym1	94	63.776	Scleropages_formosus
ENSSSCG00000040825	PYM1	99	57.346	ENSSMAG00000020912	pym1	94	58.911	Scophthalmus_maximus
ENSSSCG00000040825	PYM1	99	56.744	ENSSDUG00000001807	pym1	94	58.852	Seriola_dumerili
ENSSSCG00000040825	PYM1	99	60.000	ENSSLDG00000013730	pym1	94	61.307	Seriola_lalandi_dorsalis
ENSSSCG00000040825	PYM1	89	88.889	ENSSARG00000009569	PYM1	94	88.889	Sorex_araneus
ENSSSCG00000040825	PYM1	89	66.492	ENSSPUG00000015059	PYM1	90	66.492	Sphenodon_punctatus
ENSSSCG00000040825	PYM1	99	58.411	ENSSPAG00000020100	pym1	94	59.135	Stegastes_partitus
ENSSSCG00000040825	PYM1	99	61.058	ENSTRUG00000021367	pym1	93	62.245	Takifugu_rubripes
ENSSSCG00000040825	PYM1	99	50.495	ENSTNIG00000012534	pym1	92	56.477	Tetraodon_nigroviridis
ENSSSCG00000040825	PYM1	89	86.111	ENSTBEG00000004208	PYM1	94	86.111	Tupaia_belangeri
ENSSSCG00000040825	PYM1	89	95.000	ENSTTRG00000014971	PYM1	92	95.000	Tursiops_truncatus
ENSSSCG00000040825	PYM1	94	93.194	ENSUAMG00000014521	PYM1	94	93.194	Ursus_americanus
ENSSSCG00000040825	PYM1	91	90.761	ENSUMAG00000016241	PYM1	84	90.270	Ursus_maritimus
ENSSSCG00000040825	PYM1	94	95.288	ENSVVUG00000022749	PYM1	94	95.288	Vulpes_vulpes
ENSSSCG00000040825	PYM1	94	63.452	ENSXETG00000021850	pym1	94	64.322	Xenopus_tropicalis
ENSSSCG00000040825	PYM1	99	60.190	ENSXMAG00000011649	pym1	93	60.302	Xiphophorus_maculatus