EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000040857 (Gene tree)
Gene ID: 100624586
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 8837 bases
Position: chr17:33086005-33094841
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000042994	LSM	PF01423.22	1.1e-19	1	1
ENSSSCP00000042143	LSM	PF01423.22	1.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000038532	-	2449	-	ENSSSCP00000050194	208 (aa)	-	A0A287B1B3
ENSSSCT00000056681	-	1276	-	ENSSSCP00000042994	231 (aa)	-	A0A287AG39
ENSSSCT00000060609	-	3480	-	ENSSSCP00000042143	262 (aa)	-	A0A287AE99

Gene Model

Click here to download ENSSSCG00000040857's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000040857's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000040857	-	100	80.519	ENSSSCG00000011966	-	91	76.415
ENSSSCG00000040857	-	100	91.342	ENSSSCG00000028124	SNRPN	95	91.855

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000040857	-	100	99.567	ENSG00000125835	SNRPB	100	99.567	Homo_sapiens
ENSSSCG00000040857	-	78	92.818	ENSAPOG00000019606	snrpb	56	94.643	Acanthochromis_polyacanthus
ENSSSCG00000040857	-	99	99.561	ENSAMEG00000011353	SNRPB	95	99.138	Ailuropoda_melanoleuca
ENSSSCG00000040857	-	76	92.571	ENSACIG00000014480	snrpb	71	94.444	Amphilophus_citrinellus
ENSSSCG00000040857	-	78	92.818	ENSAOCG00000006876	snrpb	69	94.643	Amphiprion_ocellaris
ENSSSCG00000040857	-	78	92.818	ENSAPEG00000021585	snrpb	71	94.643	Amphiprion_percula
ENSSSCG00000040857	-	78	92.265	ENSATEG00000009836	snrpb	69	94.048	Anabas_testudineus
ENSSSCG00000040857	-	92	94.836	ENSACAG00000002053	SNRPB	92	94.836	Anolis_carolinensis
ENSSSCG00000040857	-	99	92.609	ENSANAG00000036271	-	76	92.593	Aotus_nancymaae
ENSSSCG00000040857	-	100	99.567	ENSANAG00000024443	-	100	99.567	Aotus_nancymaae
ENSSSCG00000040857	-	78	92.818	ENSACLG00000014707	snrpb	69	94.643	Astatotilapia_calliptera
ENSSSCG00000040857	-	79	93.443	ENSAMXG00000029434	snrpb	76	94.536	Astyanax_mexicanus
ENSSSCG00000040857	-	100	100.000	ENSBTAG00000001038	SNRPB	100	100.000	Bos_taurus
ENSSSCG00000040857	-	100	99.567	ENSCJAG00000020971	-	100	99.567	Callithrix_jacchus
ENSSSCG00000040857	-	93	92.056	ENSCJAG00000023097	-	79	92.063	Callithrix_jacchus
ENSSSCG00000040857	-	100	99.567	ENSCAFG00000006693	-	100	99.567	Canis_familiaris
ENSSSCG00000040857	-	81	87.895	ENSCAFG00000031109	-	79	84.211	Canis_familiaris
ENSSSCG00000040857	-	99	99.563	ENSCAFG00020016981	-	95	99.563	Canis_lupus_dingo
ENSSSCG00000040857	-	100	100.000	ENSCHIG00000025449	-	100	100.000	Capra_hircus
ENSSSCG00000040857	-	97	76.444	ENSTSYG00000032303	-	55	79.333	Carlito_syrichta
ENSSSCG00000040857	-	100	99.567	ENSTSYG00000014498	-	100	99.567	Carlito_syrichta
ENSSSCG00000040857	-	99	99.565	ENSCAPG00000012669	SNRPB	100	99.565	Cavia_aperea
ENSSSCG00000040857	-	100	99.567	ENSCPOG00000039408	SNRPB	100	99.567	Cavia_porcellus
ENSSSCG00000040857	-	55	88.189	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSSSCG00000040857	-	100	99.567	ENSCCAG00000026002	SNRPB	100	99.567	Cebus_capucinus
ENSSSCG00000040857	-	100	99.567	ENSCATG00000030230	SNRPB	100	99.567	Cercocebus_atys
ENSSSCG00000040857	-	98	99.558	ENSCLAG00000012442	SNRPB	95	99.558	Chinchilla_lanigera
ENSSSCG00000040857	-	100	99.567	ENSCSAG00000010840	SNRPB	100	99.567	Chlorocebus_sabaeus
ENSSSCG00000040857	-	99	96.070	ENSCPBG00000026801	SNRPB	99	96.070	Chrysemys_picta_bellii
ENSSSCG00000040857	-	100	99.567	ENSCANG00000019461	SNRPB	100	99.567	Colobus_angolensis_palliatus
ENSSSCG00000040857	-	100	99.567	ENSCGRG00001023046	Snrpb	100	99.567	Cricetulus_griseus_chok1gshd
ENSSSCG00000040857	-	96	99.548	ENSCGRG00000010423	Snrpb	98	99.548	Cricetulus_griseus_crigri
ENSSSCG00000040857	-	79	92.896	ENSCSEG00000020328	snrpb	70	94.643	Cynoglossus_semilaevis
ENSSSCG00000040857	-	73	93.452	ENSDARG00000011125	snrpb	76	94.536	Danio_rerio
ENSSSCG00000040857	-	96	95.023	ENSDNOG00000007896	-	92	94.643	Dasypus_novemcinctus
ENSSSCG00000040857	-	99	99.563	ENSDNOG00000015545	-	95	99.563	Dasypus_novemcinctus
ENSSSCG00000040857	-	97	100.000	ENSDORG00000029558	Snrpb	97	100.000	Dipodomys_ordii
ENSSSCG00000040857	-	65	70.470	FBgn0262601	SmB	74	70.470	Drosophila_melanogaster
ENSSSCG00000040857	-	79	79.235	ENSETEG00000006830	SNRPB	80	79.235	Echinops_telfairi
ENSSSCG00000040857	-	81	78.495	ENSEBUG00000007467	SNRPB	62	88.591	Eptatretus_burgeri
ENSSSCG00000040857	-	100	99.134	ENSEASG00005012991	SNRPB	100	99.134	Equus_asinus_asinus
ENSSSCG00000040857	-	100	99.567	ENSECAG00000011944	SNRPB	100	99.567	Equus_caballus
ENSSSCG00000040857	-	98	99.558	ENSEEUG00000015568	SNRPB	80	99.558	Erinaceus_europaeus
ENSSSCG00000040857	-	63	95.862	ENSELUG00000014564	snrpb	71	93.210	Esox_lucius
ENSSSCG00000040857	-	100	99.567	ENSFCAG00000034090	-	100	99.567	Felis_catus
ENSSSCG00000040857	-	74	95.349	ENSFALG00000004866	SNRPB	92	95.305	Ficedula_albicollis
ENSSSCG00000040857	-	100	99.567	ENSFDAG00000009937	SNRPB	100	99.567	Fukomys_damarensis
ENSSSCG00000040857	-	78	95.556	ENSGALG00000035421	SNRPN	92	95.475	Gallus_gallus
ENSSSCG00000040857	-	74	92.982	ENSGAFG00000019558	snrpb	73	94.083	Gambusia_affinis
ENSSSCG00000040857	-	79	91.257	ENSGACG00000003262	snrpb	70	94.643	Gasterosteus_aculeatus
ENSSSCG00000040857	-	99	96.070	ENSGAGG00000001308	SNRPB	95	96.070	Gopherus_agassizii
ENSSSCG00000040857	-	100	99.567	ENSGGOG00000016138	SNRPB	100	99.567	Gorilla_gorilla
ENSSSCG00000040857	-	78	92.818	ENSHBUG00000008369	snrpb	69	94.643	Haplochromis_burtoni
ENSSSCG00000040857	-	100	99.567	ENSHGLG00000016241	-	100	99.567	Heterocephalus_glaber_female
ENSSSCG00000040857	-	65	90.000	ENSHGLG00000016505	-	72	90.000	Heterocephalus_glaber_female
ENSSSCG00000040857	-	100	99.567	ENSHGLG00100012877	-	100	99.567	Heterocephalus_glaber_male
ENSSSCG00000040857	-	65	90.000	ENSHGLG00100004178	-	72	90.000	Heterocephalus_glaber_male
ENSSSCG00000040857	-	79	92.896	ENSHCOG00000014888	snrpb	70	94.643	Hippocampus_comes
ENSSSCG00000040857	-	73	93.452	ENSIPUG00000024569	SNRPB	76	94.536	Ictalurus_punctatus
ENSSSCG00000040857	-	99	97.817	ENSSTOG00000033664	-	95	97.817	Ictidomys_tridecemlineatus
ENSSSCG00000040857	-	94	81.944	ENSSTOG00000027821	-	62	99.265	Ictidomys_tridecemlineatus
ENSSSCG00000040857	-	100	99.567	ENSJJAG00000024170	Snrpb	100	99.567	Jaculus_jaculus
ENSSSCG00000040857	-	74	94.186	ENSKMAG00000014494	snrpb	68	95.238	Kryptolebias_marmoratus
ENSSSCG00000040857	-	79	92.896	ENSLBEG00000005678	snrpb	70	94.643	Labrus_bergylta
ENSSSCG00000040857	-	96	92.760	ENSLACG00000011459	SNRPB	92	92.760	Latimeria_chalumnae
ENSSSCG00000040857	-	73	94.048	ENSLOCG00000002687	snrpb	76	95.082	Lepisosteus_oculatus
ENSSSCG00000040857	-	99	96.491	ENSLAFG00000017588	SNRPB	99	96.507	Loxodonta_africana
ENSSSCG00000040857	-	100	99.567	ENSMFAG00000038756	SNRPB	100	99.567	Macaca_fascicularis
ENSSSCG00000040857	-	100	99.567	ENSMMUG00000010050	SNRPB	100	99.567	Macaca_mulatta
ENSSSCG00000040857	-	100	99.567	ENSMNEG00000027954	SNRPB	100	99.567	Macaca_nemestrina
ENSSSCG00000040857	-	100	99.567	ENSMLEG00000022346	SNRPB	100	99.567	Mandrillus_leucophaeus
ENSSSCG00000040857	-	78	92.778	ENSMAMG00000009294	snrpb	67	94.611	Mastacembelus_armatus
ENSSSCG00000040857	-	78	92.818	ENSMZEG00005011856	snrpb	69	94.643	Maylandia_zebra
ENSSSCG00000040857	-	100	100.000	ENSMICG00000016519	SNRPB	100	100.000	Microcebus_murinus
ENSSSCG00000040857	-	97	85.778	ENSMICG00000015983	-	87	90.476	Microcebus_murinus
ENSSSCG00000040857	-	85	80.102	ENSMOCG00000021362	-	83	75.000	Microtus_ochrogaster
ENSSSCG00000040857	-	100	99.134	ENSMOCG00000002892	-	100	99.134	Microtus_ochrogaster
ENSSSCG00000040857	-	79	92.308	ENSMMOG00000013226	snrpb	73	93.567	Mola_mola
ENSSSCG00000040857	-	78	92.265	ENSMALG00000020839	snrpb	56	94.048	Monopterus_albus
ENSSSCG00000040857	-	100	99.134	MGP_CAROLIEiJ_G0024293	Snrpb	100	99.134	Mus_caroli
ENSSSCG00000040857	-	100	99.134	ENSMUSG00000027404	Snrpb	100	99.134	Mus_musculus
ENSSSCG00000040857	-	100	99.134	MGP_PahariEiJ_G0025738	Snrpb	100	99.134	Mus_pahari
ENSSSCG00000040857	-	100	99.134	MGP_SPRETEiJ_G0025213	Snrpb	100	99.134	Mus_spretus
ENSSSCG00000040857	-	100	99.567	ENSMPUG00000009283	SNRPB	100	99.567	Mustela_putorius_furo
ENSSSCG00000040857	-	99	97.380	ENSMLUG00000016951	SNRPB	95	97.380	Myotis_lucifugus
ENSSSCG00000040857	-	100	99.567	ENSNGAG00000012051	Snrpb	100	99.567	Nannospalax_galili
ENSSSCG00000040857	-	78	90.055	ENSNBRG00000006353	snrpb	62	93.293	Neolamprologus_brichardi
ENSSSCG00000040857	-	99	99.563	ENSNLEG00000029067	SNRPB	97	99.127	Nomascus_leucogenys
ENSSSCG00000040857	-	97	96.889	ENSMEUG00000015625	SNRPB	100	96.889	Notamacropus_eugenii
ENSSSCG00000040857	-	100	99.567	ENSODEG00000004305	-	100	99.567	Octodon_degus
ENSSSCG00000040857	-	98	96.018	ENSODEG00000016060	-	95	96.018	Octodon_degus
ENSSSCG00000040857	-	78	92.818	ENSONIG00000000248	snrpb	69	94.643	Oreochromis_niloticus
ENSSSCG00000040857	-	99	100.000	ENSOCUG00000014042	-	95	100.000	Oryctolagus_cuniculus
ENSSSCG00000040857	-	77	93.296	ENSOCUG00000022423	-	86	96.429	Oryctolagus_cuniculus
ENSSSCG00000040857	-	99	97.380	ENSOCUG00000028215	-	95	97.380	Oryctolagus_cuniculus
ENSSSCG00000040857	-	93	95.349	ENSOCUG00000021456	-	78	96.296	Oryctolagus_cuniculus
ENSSSCG00000040857	-	91	72.986	ENSOCUG00000026813	-	64	70.667	Oryctolagus_cuniculus
ENSSSCG00000040857	-	78	92.265	ENSORLG00000021862	snrpb	69	94.643	Oryzias_latipes
ENSSSCG00000040857	-	99	99.563	ENSOGAG00000016149	SNRPB	95	99.563	Otolemur_garnettii
ENSSSCG00000040857	-	100	100.000	ENSOARG00000006740	SNRPB	100	100.000	Ovis_aries
ENSSSCG00000040857	-	100	99.567	ENSPPAG00000036314	SNRPB	100	99.567	Pan_paniscus
ENSSSCG00000040857	-	100	99.567	ENSPPRG00000003233	-	100	99.567	Panthera_pardus
ENSSSCG00000040857	-	99	99.565	ENSPTIG00000007468	SNRPB	99	99.565	Panthera_tigris_altaica
ENSSSCG00000040857	-	100	99.567	ENSPTRG00000013176	SNRPB	100	99.567	Pan_troglodytes
ENSSSCG00000040857	-	99	99.565	ENSPANG00000020362	SNRPB	95	99.563	Papio_anubis
ENSSSCG00000040857	-	73	92.857	ENSPKIG00000002865	snrpb	76	93.443	Paramormyrops_kingsleyae
ENSSSCG00000040857	-	99	96.053	ENSPSIG00000014125	SNRPB	95	95.259	Pelodiscus_sinensis
ENSSSCG00000040857	-	77	90.449	ENSPMGG00000016349	snrpb	69	92.025	Periophthalmus_magnuspinnatus
ENSSSCG00000040857	-	100	99.567	ENSPEMG00000007948	Snrpb	100	99.567	Peromyscus_maniculatus_bairdii
ENSSSCG00000040857	-	99	97.368	ENSPCIG00000004694	SNRPB	95	97.368	Phascolarctos_cinereus
ENSSSCG00000040857	-	82	76.842	ENSPREG00000015515	snrpb	62	95.556	Poecilia_reticulata
ENSSSCG00000040857	-	100	99.567	ENSPPYG00000010841	SNRPB	100	99.567	Pongo_abelii
ENSSSCG00000040857	-	100	99.567	ENSPCOG00000013686	SNRPB	100	99.567	Propithecus_coquereli
ENSSSCG00000040857	-	98	98.238	ENSPVAG00000017013	SNRPB	80	98.238	Pteropus_vampyrus
ENSSSCG00000040857	-	78	92.818	ENSPNYG00000014788	snrpb	69	94.643	Pundamilia_nyererei
ENSSSCG00000040857	-	79	93.443	ENSPNAG00000016126	snrpb	76	95.082	Pygocentrus_nattereri
ENSSSCG00000040857	-	100	99.567	ENSRNOG00000006961	Snrpb	100	99.567	Rattus_norvegicus
ENSSSCG00000040857	-	100	99.134	ENSRBIG00000040505	SNRPB	100	99.134	Rhinopithecus_bieti
ENSSSCG00000040857	-	100	99.567	ENSRROG00000036094	SNRPB	100	99.567	Rhinopithecus_roxellana
ENSSSCG00000040857	-	100	99.567	ENSSBOG00000027310	SNRPB	100	99.567	Saimiri_boliviensis_boliviensis
ENSSSCG00000040857	-	99	97.817	ENSSHAG00000010394	SNRPB	95	97.817	Sarcophilus_harrisii
ENSSSCG00000040857	-	73	92.262	ENSSFOG00015002870	snrpb	76	93.443	Scleropages_formosus
ENSSSCG00000040857	-	79	91.257	ENSSMAG00000006766	snrpb	70	94.048	Scophthalmus_maximus
ENSSSCG00000040857	-	78	92.818	ENSSDUG00000018539	snrpb	69	94.643	Seriola_dumerili
ENSSSCG00000040857	-	78	92.818	ENSSLDG00000022391	snrpb	69	94.643	Seriola_lalandi_dorsalis
ENSSSCG00000040857	-	95	87.727	ENSSARG00000003084	SNRPB	94	87.727	Sorex_araneus
ENSSSCG00000040857	-	99	96.053	ENSSPUG00000015659	SNRPB	95	96.053	Sphenodon_punctatus
ENSSSCG00000040857	-	78	92.818	ENSSPAG00000021992	snrpb	69	94.643	Stegastes_partitus
ENSSSCG00000040857	-	77	79.661	ENSTGUG00000005684	SNRPB	59	96.429	Taeniopygia_guttata
ENSSSCG00000040857	-	79	91.803	ENSTRUG00000023094	snrpb	72	94.048	Takifugu_rubripes
ENSSSCG00000040857	-	79	91.803	ENSTNIG00000002991	snrpb	70	94.048	Tetraodon_nigroviridis
ENSSSCG00000040857	-	78	99.444	ENSUAMG00000005984	-	88	99.454	Ursus_americanus
ENSSSCG00000040857	-	59	99.270	ENSUMAG00000002123	-	63	99.270	Ursus_maritimus
ENSSSCG00000040857	-	64	43.713	ENSVVUG00000018297	-	52	43.713	Vulpes_vulpes
ENSSSCG00000040857	-	97	79.295	ENSVVUG00000010086	-	85	80.612	Vulpes_vulpes
ENSSSCG00000040857	-	99	99.127	ENSVVUG00000025654	-	95	99.127	Vulpes_vulpes
ENSSSCG00000040857	-	96	95.023	ENSXETG00000027266	snrpb	72	95.294	Xenopus_tropicalis
ENSSSCG00000040857	-	74	78.947	ENSXMAG00000028767	snrpb	58	95.556	Xiphophorus_maculatus