EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000000401 (Gene tree)
Gene ID: 101966781
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 79065 bases
Position: chrJH393291.1:6326010-6405074
Accession: 101966781
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000000363	EST1	PF10374.9	6.1e-25	1	1
ENSSTOP00000020635	EST1	PF10374.9	6.5e-25	1	1
ENSSTOP00000028992	EST1	PF10374.9	6.5e-25	1	1
ENSSTOP00000000363	EST1_DNA_bind	PF10373.9	7.3e-56	1	1
ENSSTOP00000020635	EST1_DNA_bind	PF10373.9	7.8e-56	1	1
ENSSTOP00000028992	EST1_DNA_bind	PF10373.9	7.9e-56	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000038138	SMG7-202	6165	XM_013356179	ENSSTOP00000028992	1149 (aa)	XP_013211633	A0A287D5Y0
ENSSTOT00000020059	SMG7-201	6027	XM_005319710	ENSSTOP00000020635	1141 (aa)	XP_005319769	I3N8D9
ENSSTOT00000000403	SMG7-203	5800	-	ENSSTOP00000000363	1091 (aa)	-	I3LWK0

Gene Model

Click here to download ENSSTOG00000000401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000000401's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000000401	SMG7	100	97.998	ENSG00000116698	SMG7	100	97.892	Homo_sapiens
ENSSTOG00000000401	SMG7	88	70.659	ENSAPOG00000009611	smg7	95	71.256	Acanthochromis_polyacanthus
ENSSTOG00000000401	SMG7	99	92.914	ENSAMEG00000002357	SMG7	100	92.838	Ailuropoda_melanoleuca
ENSSTOG00000000401	SMG7	97	63.003	ENSACIG00000015152	smg7	100	63.482	Amphilophus_citrinellus
ENSSTOG00000000401	SMG7	99	65.157	ENSAOCG00000013538	smg7	99	65.432	Amphiprion_ocellaris
ENSSTOG00000000401	SMG7	99	65.021	ENSAPEG00000007851	smg7	99	65.296	Amphiprion_percula
ENSSTOG00000000401	SMG7	99	64.505	ENSATEG00000006931	smg7	99	64.932	Anabas_testudineus
ENSSTOG00000000401	SMG7	100	85.914	ENSAPLG00000015811	SMG7	100	85.914	Anas_platyrhynchos
ENSSTOG00000000401	SMG7	100	84.962	ENSACAG00000014989	SMG7	100	85.297	Anolis_carolinensis
ENSSTOG00000000401	SMG7	97	97.736	ENSANAG00000028114	SMG7	100	94.019	Aotus_nancymaae
ENSSTOG00000000401	SMG7	99	64.157	ENSACLG00000022079	smg7	99	65.095	Astatotilapia_calliptera
ENSSTOG00000000401	SMG7	99	67.113	ENSAMXG00000020809	smg7	99	66.973	Astyanax_mexicanus
ENSSTOG00000000401	SMG7	100	96.432	ENSBTAG00000008003	SMG7	98	96.432	Bos_taurus
ENSSTOG00000000401	SMG7	100	97.737	ENSCJAG00000005135	SMG7	99	97.737	Callithrix_jacchus
ENSSTOG00000000401	SMG7	100	97.563	ENSCAFG00000013276	SMG7	98	97.563	Canis_familiaris
ENSSTOG00000000401	SMG7	100	97.563	ENSCAFG00020015475	SMG7	98	97.563	Canis_lupus_dingo
ENSSTOG00000000401	SMG7	99	96.823	ENSCHIG00000018192	SMG7	99	96.823	Capra_hircus
ENSSTOG00000000401	SMG7	100	97.128	ENSTSYG00000002667	SMG7	98	97.128	Carlito_syrichta
ENSSTOG00000000401	SMG7	100	97.824	ENSCPOG00000008906	SMG7	99	97.824	Cavia_porcellus
ENSSTOG00000000401	SMG7	100	93.931	ENSCCAG00000028596	SMG7	100	93.974	Cebus_capucinus
ENSSTOG00000000401	SMG7	100	98.346	ENSCATG00000011063	SMG7	98	98.346	Cercocebus_atys
ENSSTOG00000000401	SMG7	100	97.389	ENSCLAG00000010751	SMG7	100	97.389	Chinchilla_lanigera
ENSSTOG00000000401	SMG7	100	98.172	ENSCSAG00000012654	SMG7	98	98.172	Chlorocebus_sabaeus
ENSSTOG00000000401	SMG7	92	88.921	ENSCHOG00000010522	SMG7	93	89.303	Choloepus_hoffmanni
ENSSTOG00000000401	SMG7	100	88.992	ENSCPBG00000015724	SMG7	100	88.992	Chrysemys_picta_bellii
ENSSTOG00000000401	SMG7	99	94.149	ENSCANG00000015680	SMG7	100	94.236	Colobus_angolensis_palliatus
ENSSTOG00000000401	SMG7	100	96.345	ENSCGRG00001013705	Smg7	100	96.319	Cricetulus_griseus_chok1gshd
ENSSTOG00000000401	SMG7	100	96.345	ENSCGRG00000018401	Smg7	100	96.345	Cricetulus_griseus_crigri
ENSSTOG00000000401	SMG7	95	69.000	ENSCVAG00000011842	smg7	99	69.000	Cyprinodon_variegatus
ENSSTOG00000000401	SMG7	99	66.889	ENSDARG00000060767	smg7	99	66.722	Danio_rerio
ENSSTOG00000000401	SMG7	100	96.693	ENSDORG00000007331	Smg7	100	96.693	Dipodomys_ordii
ENSSTOG00000000401	SMG7	97	96.105	ENSETEG00000002654	SMG7	100	96.105	Echinops_telfairi
ENSSTOG00000000401	SMG7	100	97.897	ENSEASG00005006524	SMG7	100	97.897	Equus_asinus_asinus
ENSSTOG00000000401	SMG7	100	97.984	ENSECAG00000004313	SMG7	100	97.984	Equus_caballus
ENSSTOG00000000401	SMG7	97	96.109	ENSEEUG00000002024	SMG7	94	96.109	Erinaceus_europaeus
ENSSTOG00000000401	SMG7	92	76.583	ENSELUG00000010293	smg7	99	66.424	Esox_lucius
ENSSTOG00000000401	SMG7	100	97.634	ENSFCAG00000010900	SMG7	100	97.814	Felis_catus
ENSSTOG00000000401	SMG7	98	83.759	ENSFALG00000003047	SMG7	100	83.759	Ficedula_albicollis
ENSSTOG00000000401	SMG7	99	96.927	ENSFDAG00000012121	SMG7	99	97.326	Fukomys_damarensis
ENSSTOG00000000401	SMG7	99	62.995	ENSFHEG00000011073	smg7	99	63.543	Fundulus_heteroclitus
ENSSTOG00000000401	SMG7	89	67.591	ENSGMOG00000004916	smg7	92	67.591	Gadus_morhua
ENSSTOG00000000401	SMG7	100	86.451	ENSGALG00000004667	SMG7	100	86.451	Gallus_gallus
ENSSTOG00000000401	SMG7	99	63.172	ENSGAFG00000019000	smg7	99	63.085	Gambusia_affinis
ENSSTOG00000000401	SMG7	97	64.685	ENSGACG00000001634	smg7	99	65.472	Gasterosteus_aculeatus
ENSSTOG00000000401	SMG7	100	97.911	ENSGGOG00000002342	SMG7	98	97.911	Gorilla_gorilla
ENSSTOG00000000401	SMG7	99	64.157	ENSHBUG00000003726	smg7	97	72.589	Haplochromis_burtoni
ENSSTOG00000000401	SMG7	98	97.415	ENSHGLG00000009353	SMG7	100	97.415	Heterocephalus_glaber_female
ENSSTOG00000000401	SMG7	100	89.395	ENSHGLG00100004878	-	100	89.395	Heterocephalus_glaber_male
ENSSTOG00000000401	SMG7	98	95.722	ENSHGLG00100009637	-	100	95.722	Heterocephalus_glaber_male
ENSSTOG00000000401	SMG7	99	67.674	ENSIPUG00000016997	smg7	99	67.674	Ictalurus_punctatus
ENSSTOG00000000401	SMG7	100	96.319	ENSJJAG00000012351	Smg7	100	96.319	Jaculus_jaculus
ENSSTOG00000000401	SMG7	90	70.500	ENSKMAG00000004900	smg7	97	70.500	Kryptolebias_marmoratus
ENSSTOG00000000401	SMG7	99	65.251	ENSLBEG00000002983	smg7	99	65.251	Labrus_bergylta
ENSSTOG00000000401	SMG7	50	63.923	ENSLBEG00000005220	-	75	63.923	Labrus_bergylta
ENSSTOG00000000401	SMG7	99	75.781	ENSLACG00000000972	SMG7	99	75.934	Latimeria_chalumnae
ENSSTOG00000000401	SMG7	99	68.060	ENSLOCG00000002010	smg7	99	67.977	Lepisosteus_oculatus
ENSSTOG00000000401	SMG7	100	97.302	ENSLAFG00000008186	SMG7	100	97.302	Loxodonta_africana
ENSSTOG00000000401	SMG7	100	98.433	ENSMFAG00000031653	SMG7	100	98.422	Macaca_fascicularis
ENSSTOG00000000401	SMG7	100	98.346	ENSMMUG00000018458	SMG7	98	98.346	Macaca_mulatta
ENSSTOG00000000401	SMG7	100	94.283	ENSMNEG00000034798	SMG7	100	94.323	Macaca_nemestrina
ENSSTOG00000000401	SMG7	100	98.346	ENSMLEG00000037170	SMG7	98	98.346	Mandrillus_leucophaeus
ENSSTOG00000000401	SMG7	88	64.558	ENSMAMG00000018733	smg7	84	66.102	Mastacembelus_armatus
ENSSTOG00000000401	SMG7	99	64.508	ENSMZEG00005015247	smg7	99	65.012	Maylandia_zebra
ENSSTOG00000000401	SMG7	97	86.074	ENSMGAG00000001561	SMG7	98	86.074	Meleagris_gallopavo
ENSSTOG00000000401	SMG7	100	96.780	ENSMAUG00000019484	Smg7	100	96.780	Mesocricetus_auratus
ENSSTOG00000000401	SMG7	100	98.172	ENSMICG00000007145	SMG7	100	98.172	Microcebus_murinus
ENSSTOG00000000401	SMG7	100	96.432	ENSMOCG00000020748	Smg7	100	96.432	Microtus_ochrogaster
ENSSTOG00000000401	SMG7	99	63.108	ENSMMOG00000001524	smg7	99	63.272	Mola_mola
ENSSTOG00000000401	SMG7	92	89.753	ENSMODG00000007139	SMG7	99	89.753	Monodelphis_domestica
ENSSTOG00000000401	SMG7	96	68.657	ENSMALG00000000061	smg7	93	68.657	Monopterus_albus
ENSSTOG00000000401	SMG7	100	96.345	MGP_CAROLIEiJ_G0014704	Smg7	100	96.345	Mus_caroli
ENSSTOG00000000401	SMG7	100	96.258	ENSMUSG00000042772	Smg7	100	96.258	Mus_musculus
ENSSTOG00000000401	SMG7	100	96.258	MGP_PahariEiJ_G0027940	Smg7	100	96.258	Mus_pahari
ENSSTOG00000000401	SMG7	100	96.345	MGP_SPRETEiJ_G0015511	Smg7	100	96.345	Mus_spretus
ENSSTOG00000000401	SMG7	98	97.504	ENSMPUG00000011732	SMG7	97	97.504	Mustela_putorius_furo
ENSSTOG00000000401	SMG7	99	96.558	ENSMLUG00000015417	SMG7	99	96.558	Myotis_lucifugus
ENSSTOG00000000401	SMG7	100	96.606	ENSNGAG00000009836	Smg7	100	96.606	Nannospalax_galili
ENSSTOG00000000401	SMG7	98	60.000	ENSNBRG00000024343	smg7	98	70.142	Neolamprologus_brichardi
ENSSTOG00000000401	SMG7	100	98.172	ENSNLEG00000018018	SMG7	98	98.172	Nomascus_leucogenys
ENSSTOG00000000401	SMG7	77	86.846	ENSMEUG00000004681	SMG7	77	87.029	Notamacropus_eugenii
ENSSTOG00000000401	SMG7	96	85.023	ENSOPRG00000013942	SMG7	96	84.749	Ochotona_princeps
ENSSTOG00000000401	SMG7	100	97.302	ENSODEG00000010390	SMG7	100	97.302	Octodon_degus
ENSSTOG00000000401	SMG7	99	63.776	ENSONIG00000000277	smg7	99	64.660	Oreochromis_niloticus
ENSSTOG00000000401	SMG7	98	91.489	ENSOANG00000000994	SMG7	100	91.933	Ornithorhynchus_anatinus
ENSSTOG00000000401	SMG7	100	89.991	ENSOCUG00000005887	SMG7	94	90.165	Oryctolagus_cuniculus
ENSSTOG00000000401	SMG7	99	62.385	ENSORLG00000007314	smg7	70	92.763	Oryzias_latipes
ENSSTOG00000000401	SMG7	99	62.719	ENSORLG00020015779	smg7	70	92.763	Oryzias_latipes_hni
ENSSTOG00000000401	SMG7	99	64.513	ENSORLG00015012289	smg7	99	62.594	Oryzias_latipes_hsok
ENSSTOG00000000401	SMG7	99	62.843	ENSOMEG00000002328	smg7	99	62.760	Oryzias_melastigma
ENSSTOG00000000401	SMG7	97	95.739	ENSOGAG00000003107	SMG7	94	95.648	Otolemur_garnettii
ENSSTOG00000000401	SMG7	100	96.606	ENSOARG00000001352	SMG7	100	96.552	Ovis_aries
ENSSTOG00000000401	SMG7	100	94.107	ENSPPAG00000031619	SMG7	100	94.148	Pan_paniscus
ENSSTOG00000000401	SMG7	100	97.737	ENSPPRG00000011222	SMG7	98	97.737	Panthera_pardus
ENSSTOG00000000401	SMG7	96	97.630	ENSPTIG00000007242	SMG7	100	93.799	Panthera_tigris_altaica
ENSSTOG00000000401	SMG7	97	98.098	ENSPTRG00000001764	SMG7	100	94.148	Pan_troglodytes
ENSSTOG00000000401	SMG7	100	98.346	ENSPANG00000004520	SMG7	98	98.346	Papio_anubis
ENSSTOG00000000401	SMG7	93	70.297	ENSPKIG00000007242	smg7	99	69.500	Paramormyrops_kingsleyae
ENSSTOG00000000401	SMG7	99	92.145	ENSPSIG00000012201	SMG7	99	92.056	Pelodiscus_sinensis
ENSSTOG00000000401	SMG7	55	58.673	ENSPMGG00000021833	smg7	89	58.000	Periophthalmus_magnuspinnatus
ENSSTOG00000000401	SMG7	100	95.648	ENSPEMG00000011315	Smg7	100	95.648	Peromyscus_maniculatus_bairdii
ENSSTOG00000000401	SMG7	100	90.657	ENSPCIG00000003786	SMG7	100	93.434	Phascolarctos_cinereus
ENSSTOG00000000401	SMG7	99	63.071	ENSPFOG00000019219	smg7	99	63.184	Poecilia_formosa
ENSSTOG00000000401	SMG7	99	63.290	ENSPLAG00000001446	smg7	99	63.117	Poecilia_latipinna
ENSSTOG00000000401	SMG7	96	62.522	ENSPMEG00000005218	smg7	99	62.343	Poecilia_mexicana
ENSSTOG00000000401	SMG7	87	60.342	ENSPREG00000019039	smg7	92	60.076	Poecilia_reticulata
ENSSTOG00000000401	SMG7	100	94.195	ENSPPYG00000000427	SMG7	100	94.195	Pongo_abelii
ENSSTOG00000000401	SMG7	95	85.609	ENSPCAG00000008360	SMG7	94	85.609	Procavia_capensis
ENSSTOG00000000401	SMG7	100	98.172	ENSPCOG00000011996	SMG7	100	98.167	Propithecus_coquereli
ENSSTOG00000000401	SMG7	92	91.491	ENSPVAG00000000851	SMG7	89	91.827	Pteropus_vampyrus
ENSSTOG00000000401	SMG7	99	64.016	ENSPNYG00000007643	smg7	99	64.954	Pundamilia_nyererei
ENSSTOG00000000401	SMG7	99	67.473	ENSPNAG00000011374	smg7	98	70.707	Pygocentrus_nattereri
ENSSTOG00000000401	SMG7	100	96.261	ENSRNOG00000027962	Smg7	100	96.296	Rattus_norvegicus
ENSSTOG00000000401	SMG7	100	98.172	ENSRBIG00000036316	SMG7	98	98.172	Rhinopithecus_bieti
ENSSTOG00000000401	SMG7	100	98.172	ENSRROG00000035719	SMG7	100	98.160	Rhinopithecus_roxellana
ENSSTOG00000000401	SMG7	100	97.809	ENSSBOG00000023454	SMG7	100	97.809	Saimiri_boliviensis_boliviensis
ENSSTOG00000000401	SMG7	100	89.552	ENSSHAG00000013147	SMG7	100	89.464	Sarcophilus_harrisii
ENSSTOG00000000401	SMG7	91	77.368	ENSSFOG00015017252	smg7	99	77.368	Scleropages_formosus
ENSSTOG00000000401	SMG7	99	64.867	ENSSMAG00000006067	smg7	99	65.008	Scophthalmus_maximus
ENSSTOG00000000401	SMG7	95	71.646	ENSSDUG00000017543	smg7	99	64.601	Seriola_dumerili
ENSSTOG00000000401	SMG7	99	87.279	ENSSPUG00000002064	SMG7	99	87.191	Sphenodon_punctatus
ENSSTOG00000000401	SMG7	100	64.162	ENSSPAG00000008733	smg7	100	63.738	Stegastes_partitus
ENSSTOG00000000401	SMG7	100	97.458	ENSSSCG00000015558	SMG7	100	97.458	Sus_scrofa
ENSSTOG00000000401	SMG7	99	86.520	ENSTGUG00000003928	SMG7	100	86.520	Taeniopygia_guttata
ENSSTOG00000000401	SMG7	99	64.064	ENSTNIG00000002802	smg7	99	63.990	Tetraodon_nigroviridis
ENSSTOG00000000401	SMG7	77	96.186	ENSTBEG00000003220	SMG7	75	96.186	Tupaia_belangeri
ENSSTOG00000000401	SMG7	96	97.260	ENSTTRG00000014778	SMG7	94	97.260	Tursiops_truncatus
ENSSTOG00000000401	SMG7	96	97.807	ENSUAMG00000017473	SMG7	100	97.807	Ursus_americanus
ENSSTOG00000000401	SMG7	96	97.807	ENSUMAG00000016389	SMG7	100	97.807	Ursus_maritimus
ENSSTOG00000000401	SMG7	100	97.721	ENSVVUG00000008976	SMG7	100	97.814	Vulpes_vulpes
ENSSTOG00000000401	SMG7	100	69.384	ENSXETG00000012528	smg7	100	69.531	Xenopus_tropicalis
ENSSTOG00000000401	SMG7	99	63.158	ENSXMAG00000007123	smg7	99	63.330	Xiphophorus_maculatus