EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000001682 (Gene tree)
Gene ID: 101958636
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 16321 bases
Position: chrJH393560.1:1683027-1699347
Accession: 101958636
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000001507	PPR	PF01535.20	3.8e-16	1	2
ENSSTOP00000001507	PPR	PF01535.20	3.8e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000001681	-	4074	XM_005339732	ENSSTOP00000001507	704 (aa)	XP_005339789	I3LZ19

Gene Model

Click here to download ENSSTOG00000001682's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000001682's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000001682	-	100	73.876	ENSG00000106246	PTCD1	100	74.017	Homo_sapiens
ENSSTOG00000001682	-	100	73.876	ENSG00000248919	ATP5MF-PTCD1	93	74.017	Homo_sapiens
ENSSTOG00000001682	-	80	47.917	ENSAPOG00000010679	ptcd1	86	48.007	Acanthochromis_polyacanthus
ENSSTOG00000001682	-	100	78.702	ENSAMEG00000006224	-	93	78.702	Ailuropoda_melanoleuca
ENSSTOG00000001682	-	89	49.289	ENSACIG00000017861	ptcd1	87	49.919	Amphilophus_citrinellus
ENSSTOG00000001682	-	86	48.856	ENSAOCG00000020741	-	85	47.840	Amphiprion_ocellaris
ENSSTOG00000001682	-	82	48.116	ENSAOCG00000022617	ptcd1	85	47.945	Amphiprion_ocellaris
ENSSTOG00000001682	-	88	47.756	ENSAPEG00000022632	ptcd1	85	47.596	Amphiprion_percula
ENSSTOG00000001682	-	89	49.440	ENSATEG00000007016	ptcd1	85	49.280	Anabas_testudineus
ENSSTOG00000001682	-	86	58.682	ENSAPLG00000006862	-	97	57.656	Anas_platyrhynchos
ENSSTOG00000001682	-	99	54.839	ENSACAG00000012871	-	92	54.839	Anolis_carolinensis
ENSSTOG00000001682	-	98	75.000	ENSANAG00000035790	-	100	75.144	Aotus_nancymaae
ENSSTOG00000001682	-	86	49.188	ENSACLG00000002824	ptcd1	84	49.188	Astatotilapia_calliptera
ENSSTOG00000001682	-	87	47.476	ENSAMXG00000037292	ptcd1	89	47.642	Astyanax_mexicanus
ENSSTOG00000001682	-	100	76.479	ENSBTAG00000020440	-	87	76.479	Bos_taurus
ENSSTOG00000001682	-	100	74.579	ENSCJAG00000015815	-	100	74.719	Callithrix_jacchus
ENSSTOG00000001682	-	100	79.126	ENSCAFG00000015055	-	93	79.126	Canis_familiaris
ENSSTOG00000001682	-	100	79.126	ENSCAFG00020014480	-	93	79.126	Canis_lupus_dingo
ENSSTOG00000001682	-	100	77.324	ENSCHIG00000027000	-	99	77.324	Capra_hircus
ENSSTOG00000001682	-	100	78.903	ENSTSYG00000029495	-	100	79.267	Carlito_syrichta
ENSSTOG00000001682	-	93	79.179	ENSCAPG00000014660	-	100	79.179	Cavia_aperea
ENSSTOG00000001682	-	100	78.028	ENSCPOG00000001780	-	100	78.028	Cavia_porcellus
ENSSTOG00000001682	-	100	74.474	ENSCCAG00000034025	-	100	74.474	Cebus_capucinus
ENSSTOG00000001682	-	100	73.913	ENSCATG00000040859	-	100	74.334	Cercocebus_atys
ENSSTOG00000001682	-	98	78.684	ENSCLAG00000006354	-	100	78.310	Chinchilla_lanigera
ENSSTOG00000001682	-	92	73.660	ENSCSAG00000017794	-	95	74.119	Chlorocebus_sabaeus
ENSSTOG00000001682	-	88	57.895	ENSCPBG00000020866	-	89	57.895	Chrysemys_picta_bellii
ENSSTOG00000001682	-	82	31.780	ENSCING00000007717	-	91	32.541	Ciona_intestinalis
ENSSTOG00000001682	-	100	73.558	ENSCANG00000023441	-	100	73.840	Colobus_angolensis_palliatus
ENSSTOG00000001682	-	99	76.028	ENSCGRG00001023686	Ptcd1	99	76.028	Cricetulus_griseus_chok1gshd
ENSSTOG00000001682	-	99	76.496	ENSCGRG00000015031	Ptcd1	99	76.496	Cricetulus_griseus_crigri
ENSSTOG00000001682	-	86	47.947	ENSCSEG00000002378	ptcd1	83	47.947	Cynoglossus_semilaevis
ENSSTOG00000001682	-	87	47.833	ENSCVAG00000015826	ptcd1	85	47.673	Cyprinodon_variegatus
ENSSTOG00000001682	-	86	48.622	ENSCVAG00000003621	ptcd1	89	48.460	Cyprinodon_variegatus
ENSSTOG00000001682	-	86	49.597	ENSDARG00000076176	ptcd1	89	49.596	Danio_rerio
ENSSTOG00000001682	-	100	74.576	ENSDNOG00000009957	-	100	75.424	Dasypus_novemcinctus
ENSSTOG00000001682	-	98	76.513	ENSDORG00000000740	Ptcd1	99	76.513	Dipodomys_ordii
ENSSTOG00000001682	-	92	39.831	ENSEBUG00000014515	ptcd1	97	41.824	Eptatretus_burgeri
ENSSTOG00000001682	-	100	79.859	ENSEASG00005002480	-	100	80.282	Equus_asinus_asinus
ENSSTOG00000001682	-	100	80.141	ENSECAG00000016617	-	100	80.563	Equus_caballus
ENSSTOG00000001682	-	91	45.109	ENSELUG00000016517	ptcd1	90	45.109	Esox_lucius
ENSSTOG00000001682	-	100	78.420	ENSFCAG00000015069	-	100	78.371	Felis_catus
ENSSTOG00000001682	-	88	58.094	ENSFALG00000013803	-	91	57.855	Ficedula_albicollis
ENSSTOG00000001682	-	100	75.493	ENSFDAG00000006393	-	100	75.211	Fukomys_damarensis
ENSSTOG00000001682	-	77	47.283	ENSFHEG00000012491	ptcd1	92	47.283	Fundulus_heteroclitus
ENSSTOG00000001682	-	82	48.630	ENSGMOG00000007639	ptcd1	91	48.199	Gadus_morhua
ENSSTOG00000001682	-	94	55.994	ENSGALG00000004711	-	94	55.994	Gallus_gallus
ENSSTOG00000001682	-	85	49.587	ENSGAFG00000013175	ptcd1	84	49.503	Gambusia_affinis
ENSSTOG00000001682	-	87	48.237	ENSGACG00000016607	ptcd1	93	48.562	Gasterosteus_aculeatus
ENSSTOG00000001682	-	83	57.661	ENSGAGG00000021832	-	90	57.661	Gopherus_agassizii
ENSSTOG00000001682	-	99	74.121	ENSGGOG00000015123	-	99	74.262	Gorilla_gorilla
ENSSTOG00000001682	-	86	49.029	ENSHBUG00000018275	ptcd1	84	49.029	Haplochromis_burtoni
ENSSTOG00000001682	-	100	76.512	ENSHGLG00000017621	-	100	76.512	Heterocephalus_glaber_female
ENSSTOG00000001682	-	100	76.512	ENSHGLG00100007218	-	100	76.512	Heterocephalus_glaber_male
ENSSTOG00000001682	-	83	48.034	ENSHCOG00000010784	ptcd1	82	48.211	Hippocampus_comes
ENSSTOG00000001682	-	100	75.740	ENSJJAG00000000319	Ptcd1	100	75.740	Jaculus_jaculus
ENSSTOG00000001682	-	86	49.178	ENSKMAG00000008708	ptcd1	83	49.178	Kryptolebias_marmoratus
ENSSTOG00000001682	-	88	48.220	ENSLBEG00000008061	ptcd1	83	47.727	Labrus_bergylta
ENSSTOG00000001682	-	85	60.165	ENSLACG00000011172	ptcd1	84	60.299	Latimeria_chalumnae
ENSSTOG00000001682	-	91	53.540	ENSLOCG00000004833	ptcd1	99	53.510	Lepisosteus_oculatus
ENSSTOG00000001682	-	100	74.330	ENSLAFG00000002588	-	100	74.330	Loxodonta_africana
ENSSTOG00000001682	-	100	73.633	ENSMFAG00000041324	-	100	74.053	Macaca_fascicularis
ENSSTOG00000001682	-	100	73.492	ENSMMUG00000030408	-	100	73.913	Macaca_mulatta
ENSSTOG00000001682	-	100	73.633	ENSMNEG00000043786	-	100	74.053	Macaca_nemestrina
ENSSTOG00000001682	-	100	55.899	ENSMLEG00000031179	-	100	58.006	Mandrillus_leucophaeus
ENSSTOG00000001682	-	92	48.392	ENSMAMG00000007623	ptcd1	89	48.239	Mastacembelus_armatus
ENSSTOG00000001682	-	86	49.029	ENSMZEG00005012722	ptcd1	84	49.029	Maylandia_zebra
ENSSTOG00000001682	-	99	55.479	ENSMGAG00000004211	-	93	55.201	Meleagris_gallopavo
ENSSTOG00000001682	-	100	76.479	ENSMICG00000017428	-	100	76.479	Microcebus_murinus
ENSSTOG00000001682	-	89	46.541	ENSMMOG00000020243	ptcd1	93	47.419	Mola_mola
ENSSTOG00000001682	-	99	57.470	ENSMODG00000001350	-	99	57.470	Monodelphis_domestica
ENSSTOG00000001682	-	89	49.686	ENSMALG00000018442	ptcd1	84	49.686	Monopterus_albus
ENSSTOG00000001682	-	99	75.568	MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.710	Mus_caroli
ENSSTOG00000001682	-	99	76.028	ENSMUSG00000029624	Ptcd1	99	76.170	Mus_musculus
ENSSTOG00000001682	-	99	74.750	MGP_PahariEiJ_G0024580	Ptcd1	99	74.608	Mus_pahari
ENSSTOG00000001682	-	99	76.312	MGP_SPRETEiJ_G0029012	Ptcd1	99	76.596	Mus_spretus
ENSSTOG00000001682	-	100	78.984	ENSMPUG00000016518	-	100	79.831	Mustela_putorius_furo
ENSSTOG00000001682	-	100	80.000	ENSMLUG00000010994	-	94	80.141	Myotis_lucifugus
ENSSTOG00000001682	-	86	49.919	ENSNBRG00000010079	ptcd1	87	49.521	Neolamprologus_brichardi
ENSSTOG00000001682	-	83	78.766	ENSNLEG00000011060	-	99	78.766	Nomascus_leucogenys
ENSSTOG00000001682	-	98	59.943	ENSMEUG00000006930	-	99	59.943	Notamacropus_eugenii
ENSSTOG00000001682	-	90	75.991	ENSOPRG00000013647	-	90	75.991	Ochotona_princeps
ENSSTOG00000001682	-	86	47.573	ENSONIG00000003168	ptcd1	99	47.573	Oreochromis_niloticus
ENSSTOG00000001682	-	79	57.766	ENSOANG00000007728	-	73	57.417	Ornithorhynchus_anatinus
ENSSTOG00000001682	-	99	73.766	ENSOCUG00000010584	-	98	73.625	Oryctolagus_cuniculus
ENSSTOG00000001682	-	89	47.771	ENSORLG00000009275	ptcd1	89	47.611	Oryzias_latipes
ENSSTOG00000001682	-	89	47.611	ENSORLG00020000988	ptcd1	90	47.452	Oryzias_latipes_hni
ENSSTOG00000001682	-	89	47.293	ENSORLG00015010557	ptcd1	90	47.134	Oryzias_latipes_hsok
ENSSTOG00000001682	-	85	49.172	ENSOMEG00000020627	ptcd1	87	49.172	Oryzias_melastigma
ENSSTOG00000001682	-	98	75.431	ENSOGAG00000010877	-	99	75.431	Otolemur_garnettii
ENSSTOG00000001682	-	100	72.152	ENSOARG00000018676	-	100	72.152	Ovis_aries
ENSSTOG00000001682	-	100	74.157	ENSPPAG00000036024	-	100	74.298	Pan_paniscus
ENSSTOG00000001682	-	100	78.090	ENSPPRG00000003478	-	100	78.090	Panthera_pardus
ENSSTOG00000001682	-	100	74.017	ENSPTRG00000019452	-	100	74.157	Pan_troglodytes
ENSSTOG00000001682	-	100	73.913	ENSPANG00000016730	-	100	74.334	Papio_anubis
ENSSTOG00000001682	-	88	52.298	ENSPKIG00000014215	ptcd1	91	51.975	Paramormyrops_kingsleyae
ENSSTOG00000001682	-	84	59.406	ENSPSIG00000011184	-	100	59.076	Pelodiscus_sinensis
ENSSTOG00000001682	-	73	41.954	ENSPMAG00000009667	ptcd1	100	41.954	Petromyzon_marinus
ENSSTOG00000001682	-	88	64.151	ENSPCIG00000024778	-	91	61.891	Phascolarctos_cinereus
ENSSTOG00000001682	-	89	47.567	ENSPFOG00000004458	ptcd1	84	47.720	Poecilia_formosa
ENSSTOG00000001682	-	85	48.675	ENSPLAG00000011051	ptcd1	84	48.179	Poecilia_latipinna
ENSSTOG00000001682	-	89	47.410	ENSPMEG00000020547	ptcd1	84	48.046	Poecilia_mexicana
ENSSTOG00000001682	-	84	48.911	ENSPREG00000000059	ptcd1	84	48.339	Poecilia_reticulata
ENSSTOG00000001682	-	93	75.566	ENSPPYG00000017377	-	99	75.566	Pongo_abelii
ENSSTOG00000001682	-	80	77.465	ENSPCAG00000001852	-	89	77.465	Procavia_capensis
ENSSTOG00000001682	-	99	77.511	ENSPCOG00000018596	-	99	77.511	Propithecus_coquereli
ENSSTOG00000001682	-	67	92.000	ENSPVAG00000007529	-	72	92.000	Pteropus_vampyrus
ENSSTOG00000001682	-	86	49.349	ENSPNYG00000019993	ptcd1	84	49.349	Pundamilia_nyererei
ENSSTOG00000001682	-	91	50.762	ENSPNAG00000014931	ptcd1	96	48.817	Pygocentrus_nattereri
ENSSTOG00000001682	-	99	75.319	ENSRNOG00000000987	Ptcd1	99	75.177	Rattus_norvegicus
ENSSTOG00000001682	-	100	73.840	ENSRBIG00000043393	-	100	74.121	Rhinopithecus_bieti
ENSSTOG00000001682	-	100	73.840	ENSRROG00000036420	-	100	74.121	Rhinopithecus_roxellana
ENSSTOG00000001682	-	100	75.000	ENSSBOG00000024114	-	100	75.140	Saimiri_boliviensis_boliviensis
ENSSTOG00000001682	-	97	57.438	ENSSHAG00000011376	-	96	61.381	Sarcophilus_harrisii
ENSSTOG00000001682	-	89	53.313	ENSSFOG00015007909	ptcd1	87	53.467	Scleropages_formosus
ENSSTOG00000001682	-	87	46.104	ENSSMAG00000000218	ptcd1	95	46.104	Scophthalmus_maximus
ENSSTOG00000001682	-	88	48.485	ENSSDUG00000015671	ptcd1	87	48.485	Seriola_dumerili
ENSSTOG00000001682	-	88	47.792	ENSSLDG00000014261	ptcd1	87	47.792	Seriola_lalandi_dorsalis
ENSSTOG00000001682	-	96	53.531	ENSSPUG00000003540	-	93	53.693	Sphenodon_punctatus
ENSSTOG00000001682	-	90	47.368	ENSSPAG00000011049	ptcd1	86	47.368	Stegastes_partitus
ENSSTOG00000001682	-	91	79.690	ENSSSCG00000007622	-	99	78.701	Sus_scrofa
ENSSTOG00000001682	-	85	60.596	ENSTGUG00000007563	-	97	60.927	Taeniopygia_guttata
ENSSTOG00000001682	-	86	47.533	ENSTRUG00000013471	ptcd1	82	47.533	Takifugu_rubripes
ENSSTOG00000001682	-	93	46.418	ENSTNIG00000008271	ptcd1	95	46.418	Tetraodon_nigroviridis
ENSSTOG00000001682	-	100	75.456	ENSTBEG00000011021	-	100	75.456	Tupaia_belangeri
ENSSTOG00000001682	-	100	75.915	ENSTTRG00000003006	-	100	75.915	Tursiops_truncatus
ENSSTOG00000001682	-	100	79.267	ENSUAMG00000008049	-	100	79.267	Ursus_americanus
ENSSTOG00000001682	-	99	79.745	ENSVVUG00000008836	-	100	79.745	Vulpes_vulpes
ENSSTOG00000001682	-	84	54.485	ENSXETG00000009891	ptcd1	87	54.366	Xenopus_tropicalis
ENSSTOG00000001682	-	85	49.416	ENSXMAG00000015540	ptcd1	83	49.833	Xiphophorus_maculatus