EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000001688 (Gene tree)
Gene ID: 101959779
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 19903 bases
Position: chrJH393560.1:1699521-1719423
Accession: 101959779
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000024115	zf-CCCH	PF00642.24	1.5e-20	1	2
ENSSTOP00000024115	zf-CCCH	PF00642.24	1.5e-20	2	2
ENSSTOP00000030354	zf-CCCH	PF00642.24	2.9e-20	1	2
ENSSTOP00000030354	zf-CCCH	PF00642.24	2.9e-20	2	2
ENSSTOP00000001512	zf-CCCH	PF00642.24	1.2e-15	1	2
ENSSTOP00000001512	zf-CCCH	PF00642.24	1.2e-15	2	2
ENSSTOP00000001512	zf-CCHC	PF00098.23	2.8e-06	1	1
ENSSTOP00000024115	zf-CCHC	PF00098.23	3.3e-06	1	1
ENSSTOP00000030354	zf-CCHC	PF00098.23	3.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000037702	CPSF4-202	4582	XM_005339736	ENSSTOP00000024115	243 (aa)	XP_005339793	A0A287CS09
ENSSTOT00000001688	CPSF4-203	636	-	ENSSTOP00000001512	211 (aa)	-	I3LZ23
ENSSTOT00000043031	CPSF4-201	5320	XM_005339735	ENSSTOP00000030354	269 (aa)	XP_005339792	A0A287D9Y7

Gene Model

Click here to download ENSSTOG00000001688's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000001688's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000001688	CPSF4	67	64.024	ENSSTOG00000001849	CPSF4L	94	64.024

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000001688	CPSF4	100	99.257	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSSTOG00000001688	CPSF4	67	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSSTOG00000001688	CPSF4	100	100.000	ENSAMEG00000006252	CPSF4	100	100.000	Ailuropoda_melanoleuca
ENSSTOG00000001688	CPSF4	100	87.243	ENSACIG00000009248	cpsf4	100	87.243	Amphilophus_citrinellus
ENSSTOG00000001688	CPSF4	100	85.185	ENSAOCG00000019616	cpsf4	100	85.185	Amphiprion_ocellaris
ENSSTOG00000001688	CPSF4	100	85.185	ENSAPEG00000011679	cpsf4	100	85.185	Amphiprion_percula
ENSSTOG00000001688	CPSF4	100	84.800	ENSATEG00000007010	cpsf4	100	85.425	Anabas_testudineus
ENSSTOG00000001688	CPSF4	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSSTOG00000001688	CPSF4	100	99.257	ENSANAG00000021360	CPSF4	100	99.257	Aotus_nancymaae
ENSSTOG00000001688	CPSF4	100	83.704	ENSACLG00000010374	cpsf4	100	83.704	Astatotilapia_calliptera
ENSSTOG00000001688	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	86.256	Astyanax_mexicanus
ENSSTOG00000001688	CPSF4	100	99.177	ENSBTAG00000002090	CPSF4	100	99.177	Bos_taurus
ENSSTOG00000001688	CPSF4	100	99.257	ENSCJAG00000015826	CPSF4	100	99.257	Callithrix_jacchus
ENSSTOG00000001688	CPSF4	100	99.628	ENSCAFG00000015036	CPSF4	100	99.628	Canis_familiaris
ENSSTOG00000001688	CPSF4	100	93.309	ENSCAFG00020014462	CPSF4	100	93.309	Canis_lupus_dingo
ENSSTOG00000001688	CPSF4	100	99.257	ENSCHIG00000014313	CPSF4	100	99.257	Capra_hircus
ENSSTOG00000001688	CPSF4	88	92.130	ENSTSYG00000008195	-	99	91.556	Carlito_syrichta
ENSSTOG00000001688	CPSF4	100	99.052	ENSTSYG00000005712	-	100	99.052	Carlito_syrichta
ENSSTOG00000001688	CPSF4	100	90.204	ENSTSYG00000014604	-	100	90.204	Carlito_syrichta
ENSSTOG00000001688	CPSF4	81	100.000	ENSCAPG00000013881	CPSF4	87	100.000	Cavia_aperea
ENSSTOG00000001688	CPSF4	100	100.000	ENSCPOG00000001783	CPSF4	100	100.000	Cavia_porcellus
ENSSTOG00000001688	CPSF4	100	99.257	ENSCCAG00000028291	CPSF4	100	99.257	Cebus_capucinus
ENSSTOG00000001688	CPSF4	100	99.257	ENSCATG00000038440	CPSF4	100	99.257	Cercocebus_atys
ENSSTOG00000001688	CPSF4	100	99.628	ENSCLAG00000007050	CPSF4	100	99.628	Chinchilla_lanigera
ENSSTOG00000001688	CPSF4	100	99.257	ENSCSAG00000017795	CPSF4	100	99.257	Chlorocebus_sabaeus
ENSSTOG00000001688	CPSF4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSSTOG00000001688	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSSTOG00000001688	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSSTOG00000001688	CPSF4	96	53.357	ENSCSAVG00000011469	-	97	53.025	Ciona_savignyi
ENSSTOG00000001688	CPSF4	100	99.257	ENSCANG00000019384	CPSF4	100	99.257	Colobus_angolensis_palliatus
ENSSTOG00000001688	CPSF4	100	100.000	ENSCGRG00001024184	Cpsf4	100	100.000	Cricetulus_griseus_chok1gshd
ENSSTOG00000001688	CPSF4	100	100.000	ENSCGRG00000013892	Cpsf4	100	100.000	Cricetulus_griseus_crigri
ENSSTOG00000001688	CPSF4	100	84.834	ENSCSEG00000019055	cpsf4	100	84.834	Cynoglossus_semilaevis
ENSSTOG00000001688	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSSTOG00000001688	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSSTOG00000001688	CPSF4	100	99.628	ENSDNOG00000006344	CPSF4	100	99.628	Dasypus_novemcinctus
ENSSTOG00000001688	CPSF4	81	99.539	ENSDORG00000000742	Cpsf4	100	99.539	Dipodomys_ordii
ENSSTOG00000001688	CPSF4	100	54.795	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSSTOG00000001688	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSSTOG00000001688	CPSF4	99	71.429	ENSEBUG00000012552	cpsf4	98	70.445	Eptatretus_burgeri
ENSSTOG00000001688	CPSF4	100	99.590	ENSEASG00005002487	CPSF4	100	99.590	Equus_asinus_asinus
ENSSTOG00000001688	CPSF4	100	100.000	ENSECAG00000007525	CPSF4	100	100.000	Equus_caballus
ENSSTOG00000001688	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSSTOG00000001688	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	80.657	Esox_lucius
ENSSTOG00000001688	CPSF4	100	100.000	ENSFCAG00000015070	CPSF4	100	100.000	Felis_catus
ENSSTOG00000001688	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSSTOG00000001688	CPSF4	100	95.062	ENSFALG00000013799	CPSF4	100	95.062	Ficedula_albicollis
ENSSTOG00000001688	CPSF4	90	99.177	ENSFDAG00000014092	CPSF4	100	99.177	Fukomys_damarensis
ENSSTOG00000001688	CPSF4	100	83.333	ENSFHEG00000010880	cpsf4	100	83.333	Fundulus_heteroclitus
ENSSTOG00000001688	CPSF4	100	80.233	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSSTOG00000001688	CPSF4	99	38.421	ENSGALG00000004441	-	98	39.326	Gallus_gallus
ENSSTOG00000001688	CPSF4	100	95.062	ENSGALG00000004714	CPSF4	100	95.062	Gallus_gallus
ENSSTOG00000001688	CPSF4	100	82.963	ENSGAFG00000010580	cpsf4	100	82.963	Gambusia_affinis
ENSSTOG00000001688	CPSF4	100	81.890	ENSGACG00000007792	cpsf4	100	81.890	Gasterosteus_aculeatus
ENSSTOG00000001688	CPSF4	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSSTOG00000001688	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSSTOG00000001688	CPSF4	100	99.257	ENSGGOG00000015131	CPSF4	100	99.257	Gorilla_gorilla
ENSSTOG00000001688	CPSF4	100	83.704	ENSHBUG00000013699	cpsf4	100	83.704	Haplochromis_burtoni
ENSSTOG00000001688	CPSF4	100	99.526	ENSHGLG00000017150	CPSF4	100	99.526	Heterocephalus_glaber_female
ENSSTOG00000001688	CPSF4	87	96.186	ENSHGLG00100009215	-	100	97.159	Heterocephalus_glaber_male
ENSSTOG00000001688	CPSF4	100	71.090	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSSTOG00000001688	CPSF4	100	81.111	ENSHCOG00000004397	cpsf4	100	79.623	Hippocampus_comes
ENSSTOG00000001688	CPSF4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSSTOG00000001688	CPSF4	100	99.628	ENSJJAG00000019426	Cpsf4	100	99.628	Jaculus_jaculus
ENSSTOG00000001688	CPSF4	100	82.222	ENSKMAG00000015642	cpsf4	100	82.222	Kryptolebias_marmoratus
ENSSTOG00000001688	CPSF4	100	64.898	ENSLACG00000018470	-	100	63.672	Latimeria_chalumnae
ENSSTOG00000001688	CPSF4	100	88.889	ENSLACG00000010938	CPSF4	100	88.889	Latimeria_chalumnae
ENSSTOG00000001688	CPSF4	100	89.591	ENSLOCG00000004814	cpsf4	100	89.591	Lepisosteus_oculatus
ENSSTOG00000001688	CPSF4	100	99.628	ENSLAFG00000000159	CPSF4	100	99.628	Loxodonta_africana
ENSSTOG00000001688	CPSF4	100	99.257	ENSMFAG00000001462	CPSF4	100	99.257	Macaca_fascicularis
ENSSTOG00000001688	CPSF4	100	99.257	ENSMMUG00000019191	CPSF4	100	99.257	Macaca_mulatta
ENSSTOG00000001688	CPSF4	100	99.257	ENSMNEG00000032306	CPSF4	100	99.257	Macaca_nemestrina
ENSSTOG00000001688	CPSF4	100	99.257	ENSMLEG00000034721	CPSF4	100	99.257	Mandrillus_leucophaeus
ENSSTOG00000001688	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	83.516	Mastacembelus_armatus
ENSSTOG00000001688	CPSF4	100	83.704	ENSMZEG00005007515	cpsf4	100	83.704	Maylandia_zebra
ENSSTOG00000001688	CPSF4	86	94.737	ENSMGAG00000004235	CPSF4	100	94.737	Meleagris_gallopavo
ENSSTOG00000001688	CPSF4	100	100.000	ENSMAUG00000021253	Cpsf4	100	100.000	Mesocricetus_auratus
ENSSTOG00000001688	CPSF4	100	99.257	ENSMICG00000017429	CPSF4	100	99.257	Microcebus_murinus
ENSSTOG00000001688	CPSF4	100	100.000	ENSMOCG00000014901	Cpsf4	100	100.000	Microtus_ochrogaster
ENSSTOG00000001688	CPSF4	100	84.834	ENSMMOG00000001813	cpsf4	100	84.834	Mola_mola
ENSSTOG00000001688	CPSF4	100	97.026	ENSMODG00000001367	CPSF4	100	97.026	Monodelphis_domestica
ENSSTOG00000001688	CPSF4	100	82.963	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSSTOG00000001688	CPSF4	100	100.000	MGP_CAROLIEiJ_G0028012	Cpsf4	100	100.000	Mus_caroli
ENSSTOG00000001688	CPSF4	100	100.000	ENSMUSG00000029625	Cpsf4	100	100.000	Mus_musculus
ENSSTOG00000001688	CPSF4	100	100.000	MGP_PahariEiJ_G0024581	Cpsf4	100	100.000	Mus_pahari
ENSSTOG00000001688	CPSF4	100	99.628	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.628	Mus_spretus
ENSSTOG00000001688	CPSF4	100	100.000	ENSMPUG00000016508	CPSF4	100	100.000	Mustela_putorius_furo
ENSSTOG00000001688	CPSF4	86	99.043	ENSMLUG00000010980	CPSF4	100	99.043	Myotis_lucifugus
ENSSTOG00000001688	CPSF4	100	99.628	ENSNGAG00000001567	Cpsf4	100	99.628	Nannospalax_galili
ENSSTOG00000001688	CPSF4	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSSTOG00000001688	CPSF4	100	99.052	ENSNLEG00000011074	CPSF4	100	99.052	Nomascus_leucogenys
ENSSTOG00000001688	CPSF4	100	97.026	ENSMEUG00000006955	CPSF4	100	97.026	Notamacropus_eugenii
ENSSTOG00000001688	CPSF4	100	99.257	ENSOPRG00000013663	CPSF4	100	99.257	Ochotona_princeps
ENSSTOG00000001688	CPSF4	100	100.000	ENSODEG00000011181	-	100	100.000	Octodon_degus
ENSSTOG00000001688	CPSF4	100	75.092	ENSODEG00000009779	-	100	75.092	Octodon_degus
ENSSTOG00000001688	CPSF4	98	84.167	ENSODEG00000018283	-	91	84.167	Octodon_degus
ENSSTOG00000001688	CPSF4	100	83.704	ENSONIG00000008495	cpsf4	100	83.704	Oreochromis_niloticus
ENSSTOG00000001688	CPSF4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSSTOG00000001688	CPSF4	100	55.036	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSSTOG00000001688	CPSF4	100	99.257	ENSOCUG00000002437	CPSF4	70	99.257	Oryctolagus_cuniculus
ENSSTOG00000001688	CPSF4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSSTOG00000001688	CPSF4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSSTOG00000001688	CPSF4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSSTOG00000001688	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSSTOG00000001688	CPSF4	100	99.628	ENSOGAG00000010884	CPSF4	100	99.628	Otolemur_garnettii
ENSSTOG00000001688	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSSTOG00000001688	CPSF4	100	98.885	ENSPPAG00000043355	CPSF4	100	98.885	Pan_paniscus
ENSSTOG00000001688	CPSF4	100	100.000	ENSPPRG00000003134	CPSF4	100	100.000	Panthera_pardus
ENSSTOG00000001688	CPSF4	90	99.587	ENSPTIG00000005604	CPSF4	90	99.587	Panthera_tigris_altaica
ENSSTOG00000001688	CPSF4	100	98.885	ENSPTRG00000019453	CPSF4	100	98.885	Pan_troglodytes
ENSSTOG00000001688	CPSF4	100	99.257	ENSPANG00000023123	CPSF4	100	99.257	Papio_anubis
ENSSTOG00000001688	CPSF4	100	83.942	ENSPKIG00000014278	cpsf4	100	83.942	Paramormyrops_kingsleyae
ENSSTOG00000001688	CPSF4	79	66.321	ENSPSIG00000018198	-	100	66.321	Pelodiscus_sinensis
ENSSTOG00000001688	CPSF4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSSTOG00000001688	CPSF4	100	81.481	ENSPMGG00000017735	cpsf4	100	77.959	Periophthalmus_magnuspinnatus
ENSSTOG00000001688	CPSF4	100	100.000	ENSPEMG00000004508	Cpsf4	100	100.000	Peromyscus_maniculatus_bairdii
ENSSTOG00000001688	CPSF4	100	97.026	ENSPCIG00000024776	CPSF4	100	97.026	Phascolarctos_cinereus
ENSSTOG00000001688	CPSF4	100	82.963	ENSPFOG00000014912	cpsf4	100	82.963	Poecilia_formosa
ENSSTOG00000001688	CPSF4	100	78.862	ENSPLAG00000009599	cpsf4	100	78.862	Poecilia_latipinna
ENSSTOG00000001688	CPSF4	100	82.963	ENSPMEG00000009790	cpsf4	100	82.963	Poecilia_mexicana
ENSSTOG00000001688	CPSF4	100	82.222	ENSPREG00000018166	cpsf4	100	78.889	Poecilia_reticulata
ENSSTOG00000001688	CPSF4	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSSTOG00000001688	CPSF4	100	98.885	ENSPCAG00000001892	CPSF4	100	98.885	Procavia_capensis
ENSSTOG00000001688	CPSF4	100	99.628	ENSPCOG00000012771	CPSF4	100	99.628	Propithecus_coquereli
ENSSTOG00000001688	CPSF4	100	93.309	ENSPVAG00000007531	CPSF4	100	93.309	Pteropus_vampyrus
ENSSTOG00000001688	CPSF4	100	83.704	ENSPNYG00000018559	cpsf4	100	83.704	Pundamilia_nyererei
ENSSTOG00000001688	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSSTOG00000001688	CPSF4	100	100.000	ENSRNOG00000000985	Cpsf4	100	100.000	Rattus_norvegicus
ENSSTOG00000001688	CPSF4	87	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSSTOG00000001688	CPSF4	100	99.052	ENSRROG00000040431	CPSF4	100	99.052	Rhinopithecus_roxellana
ENSSTOG00000001688	CPSF4	100	99.257	ENSSBOG00000020493	CPSF4	100	99.257	Saimiri_boliviensis_boliviensis
ENSSTOG00000001688	CPSF4	100	97.026	ENSSHAG00000011533	CPSF4	100	97.026	Sarcophilus_harrisii
ENSSTOG00000001688	CPSF4	100	85.145	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSSTOG00000001688	CPSF4	100	86.531	ENSSMAG00000006374	cpsf4	100	86.531	Scophthalmus_maximus
ENSSTOG00000001688	CPSF4	100	83.704	ENSSDUG00000018887	cpsf4	100	83.704	Seriola_dumerili
ENSSTOG00000001688	CPSF4	100	83.704	ENSSLDG00000019078	cpsf4	100	83.704	Seriola_lalandi_dorsalis
ENSSTOG00000001688	CPSF4	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSSTOG00000001688	CPSF4	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSSTOG00000001688	CPSF4	95	64.831	ENSSPUG00000014803	-	97	64.407	Sphenodon_punctatus
ENSSTOG00000001688	CPSF4	100	87.654	ENSSPAG00000006174	cpsf4	100	87.654	Stegastes_partitus
ENSSTOG00000001688	CPSF4	100	99.180	ENSSSCG00000026896	CPSF4	100	99.180	Sus_scrofa
ENSSTOG00000001688	CPSF4	100	93.878	ENSTGUG00000007552	CPSF4	100	93.878	Taeniopygia_guttata
ENSSTOG00000001688	CPSF4	100	80.952	ENSTRUG00000024220	cpsf4	100	80.952	Takifugu_rubripes
ENSSTOG00000001688	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSSTOG00000001688	CPSF4	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSSTOG00000001688	CPSF4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSSTOG00000001688	CPSF4	91	100.000	ENSUAMG00000008051	CPSF4	85	100.000	Ursus_americanus
ENSSTOG00000001688	CPSF4	100	100.000	ENSUMAG00000009474	CPSF4	100	100.000	Ursus_maritimus
ENSSTOG00000001688	CPSF4	100	99.180	ENSVVUG00000008824	CPSF4	100	99.180	Vulpes_vulpes
ENSSTOG00000001688	CPSF4	99	61.278	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSSTOG00000001688	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSSTOG00000001688	CPSF4	100	84.360	ENSXCOG00000016040	cpsf4	100	84.360	Xiphophorus_couchianus
ENSSTOG00000001688	CPSF4	100	82.963	ENSXMAG00000024670	cpsf4	100	82.963	Xiphophorus_maculatus