EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000001780 (Gene tree)
Gene ID: 101954747
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 28989 bases
Position: chrJH393390.1:5487533-5516521
Accession: 101954747
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000001593	EST1	PF10374.9	1.8e-24	1	1
ENSSTOP00000001593	EST1_DNA_bind	PF10373.9	5.8e-40	1	2
ENSSTOP00000001593	EST1_DNA_bind	PF10373.9	5.8e-40	2	2
ENSSTOP00000001593	PIN_4	PF13638.6	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000001786	SMG5-201	4531	XM_005331382	ENSSTOP00000001593	1016 (aa)	XP_005331439	I3LZ77

Gene Model

Click here to download ENSSTOG00000001780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000001780's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000001780	SMG5	100	96.657	ENSG00000198952	SMG5	100	96.657	Homo_sapiens
ENSSTOG00000001780	SMG5	99	67.485	ENSAPOG00000019690	smg5	99	66.699	Acanthochromis_polyacanthus
ENSSTOG00000001780	SMG5	98	93.253	ENSAMEG00000014458	SMG5	100	93.253	Ailuropoda_melanoleuca
ENSSTOG00000001780	SMG5	99	65.038	ENSACIG00000001353	smg5	99	66.475	Amphilophus_citrinellus
ENSSTOG00000001780	SMG5	98	64.897	ENSAOCG00000019483	smg5	99	61.264	Amphiprion_ocellaris
ENSSTOG00000001780	SMG5	98	66.040	ENSAPEG00000022949	smg5	98	66.567	Amphiprion_percula
ENSSTOG00000001780	SMG5	99	66.667	ENSATEG00000005348	smg5	99	66.538	Anabas_testudineus
ENSSTOG00000001780	SMG5	98	78.537	ENSAPLG00000010263	SMG5	100	78.341	Anas_platyrhynchos
ENSSTOG00000001780	SMG5	100	96.559	ENSANAG00000032899	SMG5	100	96.559	Aotus_nancymaae
ENSSTOG00000001780	SMG5	99	64.909	ENSACLG00000009311	smg5	99	65.929	Astatotilapia_calliptera
ENSSTOG00000001780	SMG5	100	94.882	ENSBTAG00000009435	SMG5	100	94.882	Bos_taurus
ENSSTOG00000001780	SMG5	99	43.834	ENSBTAG00000021747	-	99	43.369	Bos_taurus
ENSSTOG00000001780	SMG5	100	96.559	ENSCJAG00000005684	SMG5	100	96.559	Callithrix_jacchus
ENSSTOG00000001780	SMG5	100	94.193	ENSCAFG00000016839	SMG5	100	93.898	Canis_familiaris
ENSSTOG00000001780	SMG5	100	94.193	ENSCAFG00020006061	SMG5	100	93.898	Canis_lupus_dingo
ENSSTOG00000001780	SMG5	99	44.708	ENSCHIG00000006323	-	99	43.627	Capra_hircus
ENSSTOG00000001780	SMG5	100	95.079	ENSCHIG00000007709	SMG5	100	95.079	Capra_hircus
ENSSTOG00000001780	SMG5	100	95.972	ENSTSYG00000004099	SMG5	100	95.972	Carlito_syrichta
ENSSTOG00000001780	SMG5	97	74.239	ENSCAPG00000003631	SMG5	100	74.974	Cavia_aperea
ENSSTOG00000001780	SMG5	100	96.075	ENSCPOG00000015696	SMG5	100	96.075	Cavia_porcellus
ENSSTOG00000001780	SMG5	100	96.755	ENSCCAG00000027409	SMG5	100	96.755	Cebus_capucinus
ENSSTOG00000001780	SMG5	100	96.657	ENSCATG00000030539	SMG5	100	96.657	Cercocebus_atys
ENSSTOG00000001780	SMG5	100	96.860	ENSCLAG00000003983	SMG5	100	96.860	Chinchilla_lanigera
ENSSTOG00000001780	SMG5	100	96.559	ENSCSAG00000002120	SMG5	100	96.559	Chlorocebus_sabaeus
ENSSTOG00000001780	SMG5	54	90.511	ENSCHOG00000008741	-	57	90.511	Choloepus_hoffmanni
ENSSTOG00000001780	SMG5	94	78.071	ENSCPBG00000025848	SMG5	100	78.702	Chrysemys_picta_bellii
ENSSTOG00000001780	SMG5	93	35.294	ENSCING00000008706	-	99	35.010	Ciona_intestinalis
ENSSTOG00000001780	SMG5	100	92.421	ENSCANG00000029208	SMG5	100	92.421	Colobus_angolensis_palliatus
ENSSTOG00000001780	SMG5	100	93.124	ENSCGRG00001006336	Smg5	100	92.829	Cricetulus_griseus_chok1gshd
ENSSTOG00000001780	SMG5	98	93.159	ENSCGRG00000005111	Smg5	100	92.850	Cricetulus_griseus_crigri
ENSSTOG00000001780	SMG5	99	65.166	ENSCSEG00000014220	smg5	99	65.725	Cynoglossus_semilaevis
ENSSTOG00000001780	SMG5	99	60.624	ENSCVAG00000000529	smg5	99	60.933	Cyprinodon_variegatus
ENSSTOG00000001780	SMG5	92	36.287	ENSDNOG00000039862	-	100	35.021	Dasypus_novemcinctus
ENSSTOG00000001780	SMG5	100	91.535	ENSDNOG00000000051	SMG5	100	91.535	Dasypus_novemcinctus
ENSSTOG00000001780	SMG5	100	93.910	ENSDORG00000010382	Smg5	100	93.713	Dipodomys_ordii
ENSSTOG00000001780	SMG5	71	31.937	FBgn0019890	Smg5	65	31.937	Drosophila_melanogaster
ENSSTOG00000001780	SMG5	82	96.117	ENSETEG00000010336	SMG5	84	96.117	Echinops_telfairi
ENSSTOG00000001780	SMG5	90	47.609	ENSEBUG00000003739	smg5	98	46.921	Eptatretus_burgeri
ENSSTOG00000001780	SMG5	100	96.362	ENSEASG00005019122	SMG5	100	96.362	Equus_asinus_asinus
ENSSTOG00000001780	SMG5	100	96.362	ENSECAG00000001389	SMG5	100	96.362	Equus_caballus
ENSSTOG00000001780	SMG5	72	98.271	ENSEEUG00000012690	SMG5	73	98.271	Erinaceus_europaeus
ENSSTOG00000001780	SMG5	99	66.120	ENSELUG00000012585	smg5	99	66.216	Esox_lucius
ENSSTOG00000001780	SMG5	100	94.094	ENSFCAG00000011783	SMG5	100	93.707	Felis_catus
ENSSTOG00000001780	SMG5	58	81.636	ENSFALG00000001166	-	99	81.742	Ficedula_albicollis
ENSSTOG00000001780	SMG5	98	93.863	ENSFDAG00000017388	SMG5	100	93.555	Fukomys_damarensis
ENSSTOG00000001780	SMG5	97	62.298	ENSFHEG00000013939	smg5	95	67.732	Fundulus_heteroclitus
ENSSTOG00000001780	SMG5	99	77.821	ENSGALG00000029918	-	100	77.714	Gallus_gallus
ENSSTOG00000001780	SMG5	86	74.944	ENSGAFG00000021691	smg5	96	67.093	Gambusia_affinis
ENSSTOG00000001780	SMG5	100	79.487	ENSGAGG00000016131	SMG5	100	79.677	Gopherus_agassizii
ENSSTOG00000001780	SMG5	100	96.559	ENSGGOG00000010932	SMG5	100	96.559	Gorilla_gorilla
ENSSTOG00000001780	SMG5	99	64.633	ENSHBUG00000008654	smg5	99	65.081	Haplochromis_burtoni
ENSSTOG00000001780	SMG5	100	93.222	ENSHGLG00000019152	SMG5	100	93.418	Heterocephalus_glaber_female
ENSSTOG00000001780	SMG5	90	93.209	ENSHGLG00100015948	SMG5	99	93.428	Heterocephalus_glaber_male
ENSSTOG00000001780	SMG5	86	73.594	ENSHCOG00000010229	smg5	92	73.594	Hippocampus_comes
ENSSTOG00000001780	SMG5	99	61.031	ENSIPUG00000006624	Smg5	99	62.135	Ictalurus_punctatus
ENSSTOG00000001780	SMG5	100	93.131	ENSJJAG00000022763	Smg5	100	92.934	Jaculus_jaculus
ENSSTOG00000001780	SMG5	50	59.158	ENSKMAG00000014586	smg5	99	60.881	Kryptolebias_marmoratus
ENSSTOG00000001780	SMG5	99	66.313	ENSLBEG00000002145	smg5	99	65.828	Labrus_bergylta
ENSSTOG00000001780	SMG5	100	64.700	ENSLACG00000010521	SMG5	100	64.387	Latimeria_chalumnae
ENSSTOG00000001780	SMG5	96	79.108	ENSLOCG00000008380	smg5	99	62.446	Lepisosteus_oculatus
ENSSTOG00000001780	SMG5	100	93.996	ENSLAFG00000006241	SMG5	100	93.996	Loxodonta_africana
ENSSTOG00000001780	SMG5	100	96.559	ENSMFAG00000045357	SMG5	100	96.559	Macaca_fascicularis
ENSSTOG00000001780	SMG5	100	96.559	ENSMMUG00000000090	SMG5	100	96.559	Macaca_mulatta
ENSSTOG00000001780	SMG5	100	96.460	ENSMNEG00000044425	SMG5	100	96.460	Macaca_nemestrina
ENSSTOG00000001780	SMG5	100	90.000	ENSMLEG00000041192	SMG5	100	90.000	Mandrillus_leucophaeus
ENSSTOG00000001780	SMG5	54	55.935	ENSMAMG00000010683	smg5	100	60.113	Mastacembelus_armatus
ENSSTOG00000001780	SMG5	99	63.870	ENSMZEG00005015815	smg5	99	64.408	Maylandia_zebra
ENSSTOG00000001780	SMG5	63	58.921	ENSMZEG00005016543	smg5	100	59.427	Maylandia_zebra
ENSSTOG00000001780	SMG5	100	92.338	ENSMAUG00000010381	Smg5	100	92.141	Mesocricetus_auratus
ENSSTOG00000001780	SMG5	55	44.852	ENSMAUG00000000043	-	97	44.027	Mesocricetus_auratus
ENSSTOG00000001780	SMG5	100	96.559	ENSMICG00000002257	SMG5	100	96.559	Microcebus_murinus
ENSSTOG00000001780	SMG5	100	91.275	ENSMOCG00000016590	Smg5	100	90.980	Microtus_ochrogaster
ENSSTOG00000001780	SMG5	99	58.713	ENSMMOG00000017199	smg5	99	60.090	Mola_mola
ENSSTOG00000001780	SMG5	87	88.739	ENSMODG00000016901	SMG5	98	89.189	Monodelphis_domestica
ENSSTOG00000001780	SMG5	78	38.287	ENSMODG00000010675	-	84	38.462	Monodelphis_domestica
ENSSTOG00000001780	SMG5	97	35.394	ENSMODG00000004511	-	99	34.064	Monodelphis_domestica
ENSSTOG00000001780	SMG5	93	38.049	ENSMODG00000004532	-	83	38.191	Monodelphis_domestica
ENSSTOG00000001780	SMG5	75	40.157	ENSMODG00000004735	-	86	40.267	Monodelphis_domestica
ENSSTOG00000001780	SMG5	99	60.730	ENSMALG00000010375	smg5	99	59.840	Monopterus_albus
ENSSTOG00000001780	SMG5	100	93.026	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSSTOG00000001780	SMG5	100	93.026	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSSTOG00000001780	SMG5	100	92.836	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSSTOG00000001780	SMG5	100	92.829	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSSTOG00000001780	SMG5	94	92.947	ENSMPUG00000004546	SMG5	100	92.632	Mustela_putorius_furo
ENSSTOG00000001780	SMG5	100	94.423	ENSMLUG00000008518	SMG5	100	94.129	Myotis_lucifugus
ENSSTOG00000001780	SMG5	100	93.510	ENSNGAG00000020706	Smg5	100	93.510	Nannospalax_galili
ENSSTOG00000001780	SMG5	97	63.343	ENSNBRG00000004332	smg5	98	64.400	Neolamprologus_brichardi
ENSSTOG00000001780	SMG5	100	96.264	ENSNLEG00000012439	SMG5	100	96.264	Nomascus_leucogenys
ENSSTOG00000001780	SMG5	100	87.316	ENSMEUG00000012834	SMG5	100	86.431	Notamacropus_eugenii
ENSSTOG00000001780	SMG5	100	92.920	ENSOPRG00000009152	SMG5	100	93.406	Ochotona_princeps
ENSSTOG00000001780	SMG5	100	96.067	ENSODEG00000012237	SMG5	100	96.067	Octodon_degus
ENSSTOG00000001780	SMG5	89	41.357	ENSOCUG00000023338	-	99	40.919	Oryctolagus_cuniculus
ENSSTOG00000001780	SMG5	98	95.565	ENSOCUG00000012886	SMG5	100	95.565	Oryctolagus_cuniculus
ENSSTOG00000001780	SMG5	99	64.809	ENSORLG00020013127	smg5	99	65.725	Oryzias_latipes_hni
ENSSTOG00000001780	SMG5	99	64.522	ENSORLG00015019014	smg5	99	65.728	Oryzias_latipes_hsok
ENSSTOG00000001780	SMG5	82	60.884	ENSOMEG00000021330	smg5	92	60.619	Oryzias_melastigma
ENSSTOG00000001780	SMG5	100	94.587	ENSOGAG00000004966	SMG5	100	94.587	Otolemur_garnettii
ENSSTOG00000001780	SMG5	99	44.379	ENSOARG00000011963	-	99	43.640	Ovis_aries
ENSSTOG00000001780	SMG5	100	95.177	ENSOARG00000005778	SMG5	100	95.177	Ovis_aries
ENSSTOG00000001780	SMG5	100	96.362	ENSPPAG00000011996	SMG5	100	96.362	Pan_paniscus
ENSSTOG00000001780	SMG5	98	93.952	ENSPPRG00000011901	SMG5	100	93.548	Panthera_pardus
ENSSTOG00000001780	SMG5	99	85.771	ENSPTIG00000007892	SMG5	98	86.221	Panthera_tigris_altaica
ENSSTOG00000001780	SMG5	100	96.559	ENSPTRG00000049282	-	100	96.559	Pan_troglodytes
ENSSTOG00000001780	SMG5	100	96.559	ENSPTRG00000023925	SMG5	100	96.559	Pan_troglodytes
ENSSTOG00000001780	SMG5	100	96.657	ENSPANG00000011201	SMG5	100	96.657	Papio_anubis
ENSSTOG00000001780	SMG5	99	65.825	ENSPKIG00000009402	smg5	99	65.955	Paramormyrops_kingsleyae
ENSSTOG00000001780	SMG5	98	80.575	ENSPSIG00000015198	SMG5	100	80.377	Pelodiscus_sinensis
ENSSTOG00000001780	SMG5	99	61.935	ENSPMGG00000010465	smg5	99	60.332	Periophthalmus_magnuspinnatus
ENSSTOG00000001780	SMG5	100	93.124	ENSPEMG00000001819	Smg5	100	92.829	Peromyscus_maniculatus_bairdii
ENSSTOG00000001780	SMG5	56	46.410	ENSPEMG00000010022	-	95	45.189	Peromyscus_maniculatus_bairdii
ENSSTOG00000001780	SMG5	99	50.000	ENSPMAG00000000410	smg5	100	50.143	Petromyzon_marinus
ENSSTOG00000001780	SMG5	100	88.605	ENSPCIG00000018938	SMG5	100	88.998	Phascolarctos_cinereus
ENSSTOG00000001780	SMG5	50	60.967	ENSPFOG00000010191	smg5	99	62.097	Poecilia_formosa
ENSSTOG00000001780	SMG5	50	59.926	ENSPLAG00000009332	smg5	99	62.186	Poecilia_latipinna
ENSSTOG00000001780	SMG5	99	65.739	ENSPMEG00000014105	smg5	99	65.744	Poecilia_mexicana
ENSSTOG00000001780	SMG5	93	75.395	ENSPREG00000017713	smg5	99	62.186	Poecilia_reticulata
ENSSTOG00000001780	SMG5	100	96.755	ENSPPYG00000000723	SMG5	100	96.755	Pongo_abelii
ENSSTOG00000001780	SMG5	75	97.238	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSSTOG00000001780	SMG5	100	96.657	ENSPCOG00000004741	SMG5	100	96.657	Propithecus_coquereli
ENSSTOG00000001780	SMG5	100	86.614	ENSPVAG00000016748	SMG5	100	86.614	Pteropus_vampyrus
ENSSTOG00000001780	SMG5	92	64.884	ENSPNYG00000013397	smg5	99	60.885	Pundamilia_nyererei
ENSSTOG00000001780	SMG5	99	62.681	ENSPNAG00000028363	smg5	99	62.761	Pygocentrus_nattereri
ENSSTOG00000001780	SMG5	100	93.026	ENSRNOG00000019590	Smg5	100	92.731	Rattus_norvegicus
ENSSTOG00000001780	SMG5	100	96.559	ENSRBIG00000027428	SMG5	100	96.559	Rhinopithecus_bieti
ENSSTOG00000001780	SMG5	100	96.460	ENSRROG00000030035	SMG5	100	96.460	Rhinopithecus_roxellana
ENSSTOG00000001780	SMG5	100	96.755	ENSSBOG00000033339	SMG5	100	96.755	Saimiri_boliviensis_boliviensis
ENSSTOG00000001780	SMG5	98	87.988	ENSSHAG00000014163	SMG5	100	88.388	Sarcophilus_harrisii
ENSSTOG00000001780	SMG5	99	34.106	ENSSHAG00000009572	-	99	33.301	Sarcophilus_harrisii
ENSSTOG00000001780	SMG5	64	40.936	ENSSHAG00000000935	-	92	42.073	Sarcophilus_harrisii
ENSSTOG00000001780	SMG5	88	40.420	ENSSHAG00000000561	-	87	40.420	Sarcophilus_harrisii
ENSSTOG00000001780	SMG5	99	66.829	ENSSFOG00015024175	smg5	99	66.634	Scleropages_formosus
ENSSTOG00000001780	SMG5	99	58.044	ENSSMAG00000013059	smg5	99	62.032	Scophthalmus_maximus
ENSSTOG00000001780	SMG5	92	75.982	ENSSDUG00000007122	smg5	99	61.504	Seriola_dumerili
ENSSTOG00000001780	SMG5	92	76.690	ENSSLDG00000011418	smg5	99	61.934	Seriola_lalandi_dorsalis
ENSSTOG00000001780	SMG5	90	81.897	ENSSARG00000012484	SMG5	100	81.897	Sorex_araneus
ENSSTOG00000001780	SMG5	94	77.812	ENSSPUG00000002260	SMG5	100	77.508	Sphenodon_punctatus
ENSSTOG00000001780	SMG5	92	75.926	ENSSPAG00000014266	smg5	99	64.865	Stegastes_partitus
ENSSTOG00000001780	SMG5	99	74.778	ENSSSCG00000039308	-	100	75.271	Sus_scrofa
ENSSTOG00000001780	SMG5	100	96.853	ENSSSCG00000006490	-	100	96.853	Sus_scrofa
ENSSTOG00000001780	SMG5	53	36.166	ENSSSCG00000037182	-	85	37.905	Sus_scrofa
ENSSTOG00000001780	SMG5	99	80.317	ENSTGUG00000003748	-	100	80.078	Taeniopygia_guttata
ENSSTOG00000001780	SMG5	99	64.054	ENSTRUG00000012580	smg5	99	64.479	Takifugu_rubripes
ENSSTOG00000001780	SMG5	99	65.276	ENSTNIG00000010303	smg5	99	65.276	Tetraodon_nigroviridis
ENSSTOG00000001780	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSSTOG00000001780	SMG5	100	90.846	ENSTTRG00000001401	SMG5	100	90.846	Tursiops_truncatus
ENSSTOG00000001780	SMG5	100	93.602	ENSUAMG00000013721	SMG5	100	93.307	Ursus_americanus
ENSSTOG00000001780	SMG5	98	89.246	ENSUMAG00000018041	SMG5	97	88.744	Ursus_maritimus
ENSSTOG00000001780	SMG5	98	86.075	ENSVPAG00000009446	SMG5	99	86.075	Vicugna_pacos
ENSSTOG00000001780	SMG5	100	94.395	ENSVVUG00000005887	SMG5	100	93.799	Vulpes_vulpes
ENSSTOG00000001780	SMG5	77	65.826	ENSXETG00000033791	SMG5	99	65.322	Xenopus_tropicalis
ENSSTOG00000001780	SMG5	70	74.944	ENSXCOG00000004379	smg5	95	69.231	Xiphophorus_couchianus
ENSSTOG00000001780	SMG5	93	74.718	ENSXMAG00000013499	smg5	99	65.739	Xiphophorus_maculatus