EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000002140 (Gene tree)
Gene ID: 101968694
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 411552 bases
Position: chrJH393289.1:14848463-15260014
Accession: 101968694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000001921	TUDOR	PF00567.24	4.9e-28	1	1
ENSSTOP00000001921	SNase	PF00565.17	4.6e-69	1	5
ENSSTOP00000001921	SNase	PF00565.17	4.6e-69	2	5
ENSSTOP00000001921	SNase	PF00565.17	4.6e-69	3	5
ENSSTOP00000001921	SNase	PF00565.17	4.6e-69	4	5
ENSSTOP00000001921	SNase	PF00565.17	4.6e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000002155	SND1-201	3918	XM_005319414	ENSSTOP00000001921	910 (aa)	XP_005319471	I3LZW0

Gene Model

Click here to download ENSSTOG00000002140's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000002140's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000002140	SND1	100	98.571	ENSG00000197157	SND1	100	98.571	Homo_sapiens
ENSSTOG00000002140	SND1	100	83.772	ENSAPOG00000017599	snd1	99	84.650	Acanthochromis_polyacanthus
ENSSTOG00000002140	SND1	100	98.355	ENSAMEG00000004664	SND1	94	98.355	Ailuropoda_melanoleuca
ENSSTOG00000002140	SND1	98	82.083	ENSACIG00000003551	snd1	99	81.960	Amphilophus_citrinellus
ENSSTOG00000002140	SND1	100	83.553	ENSAOCG00000014166	snd1	99	84.427	Amphiprion_ocellaris
ENSSTOG00000002140	SND1	100	83.553	ENSAPEG00000007067	snd1	99	84.427	Amphiprion_percula
ENSSTOG00000002140	SND1	98	82.793	ENSATEG00000018475	snd1	88	84.036	Anabas_testudineus
ENSSTOG00000002140	SND1	100	98.791	ENSANAG00000034463	SND1	100	98.791	Aotus_nancymaae
ENSSTOG00000002140	SND1	99	83.187	ENSACLG00000022897	snd1	99	84.187	Astatotilapia_calliptera
ENSSTOG00000002140	SND1	99	84.158	ENSAMXG00000016318	snd1	98	84.744	Astyanax_mexicanus
ENSSTOG00000002140	SND1	100	98.571	ENSBTAG00000010692	SND1	100	98.571	Bos_taurus
ENSSTOG00000002140	SND1	98	46.711	WBGene00006626	tsn-1	98	47.311	Caenorhabditis_elegans
ENSSTOG00000002140	SND1	100	98.571	ENSCJAG00000017668	SND1	100	98.571	Callithrix_jacchus
ENSSTOG00000002140	SND1	100	98.681	ENSCAFG00000001700	SND1	100	98.681	Canis_familiaris
ENSSTOG00000002140	SND1	100	98.681	ENSCAFG00020021639	SND1	100	98.681	Canis_lupus_dingo
ENSSTOG00000002140	SND1	100	98.901	ENSCHIG00000023390	SND1	100	98.901	Capra_hircus
ENSSTOG00000002140	SND1	73	98.944	ENSTSYG00000004979	SND1	96	98.944	Carlito_syrichta
ENSSTOG00000002140	SND1	99	85.000	ENSCAPG00000010677	SND1	98	85.045	Cavia_aperea
ENSSTOG00000002140	SND1	100	98.352	ENSCPOG00000006251	SND1	100	98.352	Cavia_porcellus
ENSSTOG00000002140	SND1	100	98.901	ENSCCAG00000036847	SND1	100	98.901	Cebus_capucinus
ENSSTOG00000002140	SND1	100	98.791	ENSCATG00000035214	SND1	100	98.791	Cercocebus_atys
ENSSTOG00000002140	SND1	100	98.681	ENSCLAG00000011796	SND1	100	98.681	Chinchilla_lanigera
ENSSTOG00000002140	SND1	100	98.791	ENSCSAG00000010182	SND1	100	98.791	Chlorocebus_sabaeus
ENSSTOG00000002140	SND1	77	90.196	ENSCHOG00000002218	SND1	86	90.196	Choloepus_hoffmanni
ENSSTOG00000002140	SND1	100	91.868	ENSCPBG00000018094	SND1	98	92.825	Chrysemys_picta_bellii
ENSSTOG00000002140	SND1	98	56.921	ENSCING00000000524	-	98	56.921	Ciona_intestinalis
ENSSTOG00000002140	SND1	99	58.306	ENSCSAVG00000008807	-	99	58.453	Ciona_savignyi
ENSSTOG00000002140	SND1	100	98.791	ENSCANG00000035119	SND1	100	98.791	Colobus_angolensis_palliatus
ENSSTOG00000002140	SND1	100	97.582	ENSCGRG00001022514	Snd1	100	97.582	Cricetulus_griseus_chok1gshd
ENSSTOG00000002140	SND1	97	97.624	ENSCGRG00000012277	Snd1	99	97.624	Cricetulus_griseus_crigri
ENSSTOG00000002140	SND1	98	84.452	ENSCSEG00000008661	snd1	98	84.452	Cynoglossus_semilaevis
ENSSTOG00000002140	SND1	100	83.882	ENSCVAG00000010316	snd1	100	83.563	Cyprinodon_variegatus
ENSSTOG00000002140	SND1	100	84.228	ENSDARG00000006766	snd1	97	87.410	Danio_rerio
ENSSTOG00000002140	SND1	97	95.603	ENSDNOG00000006795	SND1	100	95.603	Dasypus_novemcinctus
ENSSTOG00000002140	SND1	100	99.341	ENSDORG00000000336	Snd1	100	99.341	Dipodomys_ordii
ENSSTOG00000002140	SND1	98	50.703	FBgn0035121	Tudor-SN	98	50.813	Drosophila_melanogaster
ENSSTOG00000002140	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSSTOG00000002140	SND1	60	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSSTOG00000002140	SND1	100	97.084	ENSEASG00005008513	SND1	100	97.084	Equus_asinus_asinus
ENSSTOG00000002140	SND1	100	98.681	ENSECAG00000011451	SND1	100	98.681	Equus_caballus
ENSSTOG00000002140	SND1	100	87.033	ENSEEUG00000014737	SND1	100	87.033	Erinaceus_europaeus
ENSSTOG00000002140	SND1	99	82.127	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSSTOG00000002140	SND1	100	98.681	ENSFCAG00000008289	SND1	100	98.681	Felis_catus
ENSSTOG00000002140	SND1	100	98.681	ENSFDAG00000015881	SND1	100	98.681	Fukomys_damarensis
ENSSTOG00000002140	SND1	99	82.093	ENSFHEG00000004093	snd1	97	84.633	Fundulus_heteroclitus
ENSSTOG00000002140	SND1	64	74.011	ENSGMOG00000018932	snd1	64	74.011	Gadus_morhua
ENSSTOG00000002140	SND1	100	84.211	ENSGAFG00000008421	snd1	99	85.118	Gambusia_affinis
ENSSTOG00000002140	SND1	100	53.855	ENSGACG00000019793	snd1	98	54.314	Gasterosteus_aculeatus
ENSSTOG00000002140	SND1	100	98.791	ENSGGOG00000009614	SND1	100	98.791	Gorilla_gorilla
ENSSTOG00000002140	SND1	99	83.700	ENSHBUG00000019135	snd1	99	84.187	Haplochromis_burtoni
ENSSTOG00000002140	SND1	100	98.352	ENSHGLG00000003618	SND1	100	98.352	Heterocephalus_glaber_female
ENSSTOG00000002140	SND1	99	97.901	ENSHGLG00100012449	SND1	100	97.901	Heterocephalus_glaber_male
ENSSTOG00000002140	SND1	100	82.895	ENSHCOG00000005266	snd1	98	84.116	Hippocampus_comes
ENSSTOG00000002140	SND1	100	82.604	ENSIPUG00000013279	snd1	98	83.630	Ictalurus_punctatus
ENSSTOG00000002140	SND1	100	98.791	ENSJJAG00000009561	Snd1	100	98.791	Jaculus_jaculus
ENSSTOG00000002140	SND1	100	83.662	ENSKMAG00000016997	snd1	98	84.676	Kryptolebias_marmoratus
ENSSTOG00000002140	SND1	100	85.067	ENSLBEG00000013563	snd1	99	83.426	Labrus_bergylta
ENSSTOG00000002140	SND1	99	85.336	ENSLOCG00000015537	snd1	98	85.336	Lepisosteus_oculatus
ENSSTOG00000002140	SND1	100	97.692	ENSLAFG00000009696	SND1	100	97.692	Loxodonta_africana
ENSSTOG00000002140	SND1	100	98.791	ENSMFAG00000038114	SND1	100	98.791	Macaca_fascicularis
ENSSTOG00000002140	SND1	100	98.791	ENSMMUG00000015432	SND1	100	98.791	Macaca_mulatta
ENSSTOG00000002140	SND1	100	98.791	ENSMNEG00000039808	SND1	100	98.791	Macaca_nemestrina
ENSSTOG00000002140	SND1	100	98.681	ENSMLEG00000029040	SND1	100	98.681	Mandrillus_leucophaeus
ENSSTOG00000002140	SND1	99	83.793	ENSMAMG00000011739	snd1	98	84.487	Mastacembelus_armatus
ENSSTOG00000002140	SND1	99	83.187	ENSMZEG00005005681	snd1	99	84.187	Maylandia_zebra
ENSSTOG00000002140	SND1	100	98.901	ENSMICG00000000097	SND1	100	98.901	Microcebus_murinus
ENSSTOG00000002140	SND1	100	98.242	ENSMOCG00000005040	Snd1	100	98.242	Microtus_ochrogaster
ENSSTOG00000002140	SND1	100	83.224	ENSMMOG00000001795	snd1	99	84.093	Mola_mola
ENSSTOG00000002140	SND1	99	95.541	ENSMODG00000015182	SND1	99	95.541	Monodelphis_domestica
ENSSTOG00000002140	SND1	100	83.224	ENSMALG00000012071	snd1	98	84.040	Monopterus_albus
ENSSTOG00000002140	SND1	100	98.242	MGP_CAROLIEiJ_G0028159	Snd1	100	98.242	Mus_caroli
ENSSTOG00000002140	SND1	100	98.022	ENSMUSG00000001424	Snd1	100	98.022	Mus_musculus
ENSSTOG00000002140	SND1	100	98.132	MGP_PahariEiJ_G0021917	Snd1	100	98.132	Mus_pahari
ENSSTOG00000002140	SND1	100	98.242	MGP_SPRETEiJ_G0029159	Snd1	100	98.242	Mus_spretus
ENSSTOG00000002140	SND1	100	98.571	ENSMPUG00000006545	SND1	100	98.571	Mustela_putorius_furo
ENSSTOG00000002140	SND1	97	97.207	ENSMLUG00000017130	SND1	99	97.207	Myotis_lucifugus
ENSSTOG00000002140	SND1	100	98.462	ENSNGAG00000011186	Snd1	100	98.462	Nannospalax_galili
ENSSTOG00000002140	SND1	99	83.077	ENSNBRG00000006681	snd1	99	84.076	Neolamprologus_brichardi
ENSSTOG00000002140	SND1	100	98.681	ENSNLEG00000012263	SND1	100	98.757	Nomascus_leucogenys
ENSSTOG00000002140	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSSTOG00000002140	SND1	100	98.571	ENSODEG00000011502	SND1	100	98.571	Octodon_degus
ENSSTOG00000002140	SND1	99	83.077	ENSONIG00000011481	snd1	96	84.076	Oreochromis_niloticus
ENSSTOG00000002140	SND1	98	94.369	ENSOANG00000000817	SND1	99	93.757	Ornithorhynchus_anatinus
ENSSTOG00000002140	SND1	100	97.363	ENSOCUG00000001620	SND1	100	97.363	Oryctolagus_cuniculus
ENSSTOG00000002140	SND1	98	84.022	ENSORLG00000015201	snd1	98	84.022	Oryzias_latipes
ENSSTOG00000002140	SND1	98	84.134	ENSORLG00020013991	snd1	98	84.134	Oryzias_latipes_hni
ENSSTOG00000002140	SND1	98	84.134	ENSORLG00015012436	snd1	98	84.134	Oryzias_latipes_hsok
ENSSTOG00000002140	SND1	100	83.224	ENSOMEG00000006406	snd1	98	84.452	Oryzias_melastigma
ENSSTOG00000002140	SND1	100	98.246	ENSOGAG00000013356	SND1	94	98.246	Otolemur_garnettii
ENSSTOG00000002140	SND1	97	96.045	ENSOARG00000002149	SND1	100	96.045	Ovis_aries
ENSSTOG00000002140	SND1	100	98.681	ENSPPAG00000042947	SND1	100	98.681	Pan_paniscus
ENSSTOG00000002140	SND1	100	98.681	ENSPPRG00000004494	SND1	100	98.681	Panthera_pardus
ENSSTOG00000002140	SND1	100	98.571	ENSPTIG00000014214	SND1	100	98.571	Panthera_tigris_altaica
ENSSTOG00000002140	SND1	100	98.681	ENSPTRG00000023911	SND1	100	98.681	Pan_troglodytes
ENSSTOG00000002140	SND1	97	98.756	ENSPANG00000011997	SND1	99	98.756	Papio_anubis
ENSSTOG00000002140	SND1	99	81.477	ENSPKIG00000023494	snd1	98	81.798	Paramormyrops_kingsleyae
ENSSTOG00000002140	SND1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSSTOG00000002140	SND1	100	98.352	ENSPEMG00000010240	Snd1	100	98.352	Peromyscus_maniculatus_bairdii
ENSSTOG00000002140	SND1	97	73.333	ENSPMAG00000007915	-	99	73.333	Petromyzon_marinus
ENSSTOG00000002140	SND1	99	95.987	ENSPCIG00000011561	SND1	99	95.987	Phascolarctos_cinereus
ENSSTOG00000002140	SND1	100	83.662	ENSPFOG00000001557	snd1	99	84.538	Poecilia_formosa
ENSSTOG00000002140	SND1	100	83.772	ENSPLAG00000018459	snd1	96	84.650	Poecilia_latipinna
ENSSTOG00000002140	SND1	100	84.101	ENSPMEG00000006803	snd1	99	84.983	Poecilia_mexicana
ENSSTOG00000002140	SND1	100	83.991	ENSPREG00000002189	snd1	99	84.872	Poecilia_reticulata
ENSSTOG00000002140	SND1	93	98.635	ENSPPYG00000017972	SND1	100	98.635	Pongo_abelii
ENSSTOG00000002140	SND1	100	86.154	ENSPCAG00000011305	SND1	99	86.065	Procavia_capensis
ENSSTOG00000002140	SND1	100	98.571	ENSPCOG00000026791	SND1	100	98.571	Propithecus_coquereli
ENSSTOG00000002140	SND1	100	96.813	ENSPVAG00000013945	SND1	100	96.813	Pteropus_vampyrus
ENSSTOG00000002140	SND1	99	83.187	ENSPNYG00000000932	snd1	99	84.187	Pundamilia_nyererei
ENSSTOG00000002140	SND1	100	83.479	ENSPNAG00000001206	snd1	98	84.444	Pygocentrus_nattereri
ENSSTOG00000002140	SND1	99	97.797	ENSRNOG00000031173	Snd1	99	97.797	Rattus_norvegicus
ENSSTOG00000002140	SND1	73	99.060	ENSRBIG00000027782	-	93	99.240	Rhinopithecus_bieti
ENSSTOG00000002140	SND1	100	98.791	ENSRROG00000033020	SND1	100	98.791	Rhinopithecus_roxellana
ENSSTOG00000002140	SND1	100	98.791	ENSSBOG00000032461	SND1	100	98.791	Saimiri_boliviensis_boliviensis
ENSSTOG00000002140	SND1	98	92.680	ENSSHAG00000015359	SND1	100	92.680	Sarcophilus_harrisii
ENSSTOG00000002140	SND1	100	82.372	ENSSFOG00015001103	snd1	98	83.463	Scleropages_formosus
ENSSTOG00000002140	SND1	98	83.781	ENSSMAG00000001932	snd1	93	83.519	Scophthalmus_maximus
ENSSTOG00000002140	SND1	100	83.553	ENSSDUG00000002699	snd1	92	84.427	Seriola_dumerili
ENSSTOG00000002140	SND1	100	76.425	ENSSLDG00000001950	snd1	98	77.197	Seriola_lalandi_dorsalis
ENSSTOG00000002140	SND1	86	98.113	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSSTOG00000002140	SND1	73	87.652	ENSSPUG00000017586	SND1	96	87.652	Sphenodon_punctatus
ENSSTOG00000002140	SND1	76	84.772	ENSSPAG00000021398	snd1	96	86.911	Stegastes_partitus
ENSSTOG00000002140	SND1	100	98.352	ENSSSCG00000016590	SND1	100	98.352	Sus_scrofa
ENSSTOG00000002140	SND1	99	83.394	ENSTRUG00000014067	snd1	98	83.557	Takifugu_rubripes
ENSSTOG00000002140	SND1	100	83.224	ENSTNIG00000011019	snd1	95	87.392	Tetraodon_nigroviridis
ENSSTOG00000002140	SND1	93	93.278	ENSTBEG00000003999	SND1	100	93.278	Tupaia_belangeri
ENSSTOG00000002140	SND1	100	94.066	ENSTTRG00000006059	SND1	100	94.066	Tursiops_truncatus
ENSSTOG00000002140	SND1	91	98.479	ENSUAMG00000005604	-	93	98.479	Ursus_americanus
ENSSTOG00000002140	SND1	71	89.610	ENSUAMG00000002820	-	86	89.516	Ursus_americanus
ENSSTOG00000002140	SND1	100	98.462	ENSUMAG00000005960	SND1	100	98.462	Ursus_maritimus
ENSSTOG00000002140	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSSTOG00000002140	SND1	100	98.571	ENSVVUG00000007226	SND1	100	98.571	Vulpes_vulpes
ENSSTOG00000002140	SND1	97	84.746	ENSXETG00000023043	snd1	100	84.668	Xenopus_tropicalis
ENSSTOG00000002140	SND1	92	81.473	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSSTOG00000002140	SND1	100	84.211	ENSXMAG00000011469	snd1	99	85.095	Xiphophorus_maculatus