EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000003641 (Gene tree)
Gene ID: 101970428
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 29504 bases
Position: chrJH393296.1:5135398-5164901
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000003285	TruB_N	PF01509.18	2.7e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000003669	TRUB1-201	996	XM_013356502	ENSSTOP00000003285	331 (aa)	-	I3M2Q4

Gene Model

Click here to download ENSSTOG00000003641's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000003641's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000003641	TRUB1	80	31.046	ENSSTOG00000022617	-	93	31.046
ENSSTOG00000003641	TRUB1	79	30.592	ENSSTOG00000008024	-	93	30.168

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000003641	TRUB1	99	88.252	ENSG00000165832	TRUB1	86	94.020	Homo_sapiens
ENSSTOG00000003641	TRUB1	73	68.163	ENSAPOG00000020565	trub1	89	67.886	Acanthochromis_polyacanthus
ENSSTOG00000003641	TRUB1	90	94.059	ENSAMEG00000014931	TRUB1	86	94.059	Ailuropoda_melanoleuca
ENSSTOG00000003641	TRUB1	85	56.383	ENSACIG00000003060	trub1	94	56.383	Amphilophus_citrinellus
ENSSTOG00000003641	TRUB1	73	67.755	ENSAOCG00000017188	trub1	89	67.480	Amphiprion_ocellaris
ENSSTOG00000003641	TRUB1	73	67.480	ENSAPEG00000015209	trub1	89	67.480	Amphiprion_percula
ENSSTOG00000003641	TRUB1	72	68.619	ENSATEG00000023291	trub1	86	68.619	Anabas_testudineus
ENSSTOG00000003641	TRUB1	83	75.090	ENSAPLG00000006808	TRUB1	99	75.090	Anas_platyrhynchos
ENSSTOG00000003641	TRUB1	80	70.632	ENSACAG00000009282	TRUB1	97	70.632	Anolis_carolinensis
ENSSTOG00000003641	TRUB1	90	95.000	ENSANAG00000022870	TRUB1	89	93.930	Aotus_nancymaae
ENSSTOG00000003641	TRUB1	75	67.063	ENSACLG00000000823	trub1	91	67.063	Astatotilapia_calliptera
ENSSTOG00000003641	TRUB1	80	64.794	ENSAMXG00000015845	trub1	89	64.794	Astyanax_mexicanus
ENSSTOG00000003641	TRUB1	98	86.880	ENSBTAG00000012955	TRUB1	86	93.377	Bos_taurus
ENSSTOG00000003641	TRUB1	99	88.571	ENSCJAG00000047815	TRUB1	89	93.949	Callithrix_jacchus
ENSSTOG00000003641	TRUB1	100	88.000	ENSCAFG00000011688	TRUB1	90	93.038	Canis_familiaris
ENSSTOG00000003641	TRUB1	100	88.571	ENSCAFG00020013237	TRUB1	90	93.354	Canis_lupus_dingo
ENSSTOG00000003641	TRUB1	90	93.709	ENSCHIG00000020884	TRUB1	90	93.709	Capra_hircus
ENSSTOG00000003641	TRUB1	99	86.571	ENSTSYG00000000446	TRUB1	86	93.688	Carlito_syrichta
ENSSTOG00000003641	TRUB1	76	83.004	ENSCAPG00000017088	TRUB1	99	83.004	Cavia_aperea
ENSSTOG00000003641	TRUB1	69	83.673	ENSCPOG00000040236	-	81	93.401	Cavia_porcellus
ENSSTOG00000003641	TRUB1	70	85.776	ENSCPOG00000030129	-	76	93.333	Cavia_porcellus
ENSSTOG00000003641	TRUB1	90	94.352	ENSCCAG00000028842	TRUB1	89	93.312	Cebus_capucinus
ENSSTOG00000003641	TRUB1	99	87.679	ENSCATG00000033431	TRUB1	90	92.994	Cercocebus_atys
ENSSTOG00000003641	TRUB1	69	84.898	ENSCLAG00000008664	TRUB1	81	94.416	Chinchilla_lanigera
ENSSTOG00000003641	TRUB1	99	87.966	ENSCSAG00000004891	TRUB1	90	93.312	Chlorocebus_sabaeus
ENSSTOG00000003641	TRUB1	100	73.639	ENSCHOG00000011931	TRUB1	90	77.143	Choloepus_hoffmanni
ENSSTOG00000003641	TRUB1	83	78.339	ENSCPBG00000003051	TRUB1	96	78.339	Chrysemys_picta_bellii
ENSSTOG00000003641	TRUB1	99	87.966	ENSCANG00000029445	TRUB1	90	93.312	Colobus_angolensis_palliatus
ENSSTOG00000003641	TRUB1	76	85.490	ENSCGRG00001016772	-	90	77.181	Cricetulus_griseus_chok1gshd
ENSSTOG00000003641	TRUB1	84	77.580	ENSCGRG00001010322	-	79	77.816	Cricetulus_griseus_chok1gshd
ENSSTOG00000003641	TRUB1	84	86.833	ENSCGRG00000010806	Trub1	91	85.906	Cricetulus_griseus_crigri
ENSSTOG00000003641	TRUB1	74	64.490	ENSCSEG00000011261	trub1	79	64.228	Cynoglossus_semilaevis
ENSSTOG00000003641	TRUB1	73	67.755	ENSCVAG00000008791	trub1	79	65.504	Cyprinodon_variegatus
ENSSTOG00000003641	TRUB1	81	63.971	ENSDARG00000053805	trub1	93	63.971	Danio_rerio
ENSSTOG00000003641	TRUB1	97	81.287	ENSDNOG00000001069	TRUB1	90	87.025	Dasypus_novemcinctus
ENSSTOG00000003641	TRUB1	100	85.260	ENSDORG00000010431	Trub1	87	92.384	Dipodomys_ordii
ENSSTOG00000003641	TRUB1	79	72.059	ENSETEG00000009183	TRUB1	65	85.906	Echinops_telfairi
ENSSTOG00000003641	TRUB1	90	93.333	ENSEASG00005014739	TRUB1	90	92.089	Equus_asinus_asinus
ENSSTOG00000003641	TRUB1	90	93.333	ENSECAG00000007177	TRUB1	90	92.089	Equus_caballus
ENSSTOG00000003641	TRUB1	99	73.184	ENSEEUG00000013993	TRUB1	83	80.936	Erinaceus_europaeus
ENSSTOG00000003641	TRUB1	73	69.388	ENSELUG00000000502	trub1	86	69.388	Esox_lucius
ENSSTOG00000003641	TRUB1	90	93.667	ENSFCAG00000031927	TRUB1	86	93.667	Felis_catus
ENSSTOG00000003641	TRUB1	72	75.000	ENSFALG00000002232	TRUB1	92	75.000	Ficedula_albicollis
ENSSTOG00000003641	TRUB1	69	83.673	ENSFDAG00000008140	TRUB1	81	94.924	Fukomys_damarensis
ENSSTOG00000003641	TRUB1	73	66.122	ENSFHEG00000004016	trub1	86	65.079	Fundulus_heteroclitus
ENSSTOG00000003641	TRUB1	81	73.897	ENSGALG00000009091	TRUB1	96	73.897	Gallus_gallus
ENSSTOG00000003641	TRUB1	71	66.102	ENSGAFG00000009193	trub1	83	66.102	Gambusia_affinis
ENSSTOG00000003641	TRUB1	58	68.205	ENSGACG00000015387	trub1	96	68.205	Gasterosteus_aculeatus
ENSSTOG00000003641	TRUB1	87	76.632	ENSGAGG00000009758	TRUB1	81	77.465	Gopherus_agassizii
ENSSTOG00000003641	TRUB1	99	88.825	ENSGGOG00000004583	TRUB1	86	94.684	Gorilla_gorilla
ENSSTOG00000003641	TRUB1	75	67.063	ENSHBUG00000016787	trub1	91	67.063	Haplochromis_burtoni
ENSSTOG00000003641	TRUB1	100	83.429	ENSHGLG00000015314	TRUB1	87	90.728	Heterocephalus_glaber_female
ENSSTOG00000003641	TRUB1	69	86.555	ENSHGLG00100009183	TRUB1	83	94.924	Heterocephalus_glaber_male
ENSSTOG00000003641	TRUB1	73	67.755	ENSHCOG00000017877	trub1	89	67.755	Hippocampus_comes
ENSSTOG00000003641	TRUB1	80	66.292	ENSIPUG00000017559	trub1	94	66.292	Ictalurus_punctatus
ENSSTOG00000003641	TRUB1	100	82.941	ENSJJAG00000011800	Trub1	88	89.667	Jaculus_jaculus
ENSSTOG00000003641	TRUB1	76	65.370	ENSKMAG00000006232	trub1	92	65.370	Kryptolebias_marmoratus
ENSSTOG00000003641	TRUB1	87	60.627	ENSLBEG00000026722	trub1	92	64.259	Labrus_bergylta
ENSSTOG00000003641	TRUB1	80	73.881	ENSLACG00000014885	TRUB1	90	73.881	Latimeria_chalumnae
ENSSTOG00000003641	TRUB1	82	68.864	ENSLOCG00000012979	trub1	93	68.864	Lepisosteus_oculatus
ENSSTOG00000003641	TRUB1	99	77.650	ENSLAFG00000015452	TRUB1	85	84.950	Loxodonta_africana
ENSSTOG00000003641	TRUB1	99	87.966	ENSMFAG00000031767	TRUB1	90	93.312	Macaca_fascicularis
ENSSTOG00000003641	TRUB1	99	87.966	ENSMMUG00000001902	TRUB1	90	93.312	Macaca_mulatta
ENSSTOG00000003641	TRUB1	99	83.668	ENSMNEG00000044646	TRUB1	89	88.535	Macaca_nemestrina
ENSSTOG00000003641	TRUB1	99	88.252	ENSMLEG00000042655	TRUB1	90	93.312	Mandrillus_leucophaeus
ENSSTOG00000003641	TRUB1	75	67.063	ENSMZEG00005024095	trub1	91	67.063	Maylandia_zebra
ENSSTOG00000003641	TRUB1	81	73.162	ENSMGAG00000011135	TRUB1	93	73.162	Meleagris_gallopavo
ENSSTOG00000003641	TRUB1	89	83.221	ENSMAUG00000011101	Trub1	89	83.056	Mesocricetus_auratus
ENSSTOG00000003641	TRUB1	100	89.143	ENSMICG00000016324	TRUB1	87	96.026	Microcebus_murinus
ENSSTOG00000003641	TRUB1	100	79.822	ENSMOCG00000017759	Trub1	91	84.768	Microtus_ochrogaster
ENSSTOG00000003641	TRUB1	85	81.979	ENSMODG00000009676	TRUB1	81	80.205	Monodelphis_domestica
ENSSTOG00000003641	TRUB1	100	80.882	MGP_CAROLIEiJ_G0023100	Trub1	89	85.099	Mus_caroli
ENSSTOG00000003641	TRUB1	100	79.706	ENSMUSG00000025086	Trub1	89	84.106	Mus_musculus
ENSSTOG00000003641	TRUB1	100	81.657	MGP_PahariEiJ_G0014588	Trub1	89	85.430	Mus_pahari
ENSSTOG00000003641	TRUB1	100	80.000	MGP_SPRETEiJ_G0024021	Trub1	89	84.437	Mus_spretus
ENSSTOG00000003641	TRUB1	90	95.349	ENSMPUG00000003556	TRUB1	90	94.268	Mustela_putorius_furo
ENSSTOG00000003641	TRUB1	95	88.199	ENSMLUG00000017686	TRUB1	96	88.923	Myotis_lucifugus
ENSSTOG00000003641	TRUB1	100	81.375	ENSNGAG00000018682	Trub1	87	89.404	Nannospalax_galili
ENSSTOG00000003641	TRUB1	76	66.798	ENSNBRG00000023393	trub1	90	66.798	Neolamprologus_brichardi
ENSSTOG00000003641	TRUB1	89	94.314	ENSNLEG00000016345	TRUB1	90	92.675	Nomascus_leucogenys
ENSSTOG00000003641	TRUB1	61	90.050	ENSMEUG00000006603	TRUB1	78	87.204	Notamacropus_eugenii
ENSSTOG00000003641	TRUB1	90	84.437	ENSOPRG00000009371	TRUB1	88	84.437	Ochotona_princeps
ENSSTOG00000003641	TRUB1	99	81.375	ENSODEG00000010854	TRUB1	86	88.333	Octodon_degus
ENSSTOG00000003641	TRUB1	73	67.480	ENSONIG00000007249	trub1	89	67.886	Oreochromis_niloticus
ENSSTOG00000003641	TRUB1	82	78.832	ENSOANG00000001556	TRUB1	90	78.832	Ornithorhynchus_anatinus
ENSSTOG00000003641	TRUB1	90	88.079	ENSOCUG00000009456	TRUB1	97	82.388	Oryctolagus_cuniculus
ENSSTOG00000003641	TRUB1	72	69.038	ENSORLG00000029719	trub1	91	66.535	Oryzias_latipes
ENSSTOG00000003641	TRUB1	72	68.619	ENSORLG00020016767	trub1	89	66.142	Oryzias_latipes_hni
ENSSTOG00000003641	TRUB1	72	68.619	ENSORLG00015014728	trub1	90	66.403	Oryzias_latipes_hsok
ENSSTOG00000003641	TRUB1	83	63.082	ENSOMEG00000014556	trub1	96	63.177	Oryzias_melastigma
ENSSTOG00000003641	TRUB1	100	88.000	ENSOGAG00000015895	TRUB1	86	96.026	Otolemur_garnettii
ENSSTOG00000003641	TRUB1	89	91.419	ENSOARG00000015591	TRUB1	87	91.475	Ovis_aries
ENSSTOG00000003641	TRUB1	99	88.825	ENSPPAG00000043645	TRUB1	86	94.684	Pan_paniscus
ENSSTOG00000003641	TRUB1	90	93.000	ENSPPRG00000007096	TRUB1	86	93.000	Panthera_pardus
ENSSTOG00000003641	TRUB1	90	93.333	ENSPTIG00000006378	TRUB1	86	93.333	Panthera_tigris_altaica
ENSSTOG00000003641	TRUB1	99	88.825	ENSPTRG00000002964	TRUB1	86	94.684	Pan_troglodytes
ENSSTOG00000003641	TRUB1	99	87.679	ENSPANG00000020712	TRUB1	90	93.312	Papio_anubis
ENSSTOG00000003641	TRUB1	52	69.006	ENSPKIG00000003852	trub1	72	69.006	Paramormyrops_kingsleyae
ENSSTOG00000003641	TRUB1	83	75.451	ENSPSIG00000012877	TRUB1	95	75.451	Pelodiscus_sinensis
ENSSTOG00000003641	TRUB1	71	67.660	ENSPMGG00000000075	trub1	84	67.660	Periophthalmus_magnuspinnatus
ENSSTOG00000003641	TRUB1	100	78.947	ENSPEMG00000011156	Trub1	89	84.053	Peromyscus_maniculatus_bairdii
ENSSTOG00000003641	TRUB1	85	81.272	ENSPCIG00000009729	TRUB1	80	79.863	Phascolarctos_cinereus
ENSSTOG00000003641	TRUB1	71	68.085	ENSPFOG00000009950	trub1	86	68.085	Poecilia_formosa
ENSSTOG00000003641	TRUB1	71	68.085	ENSPLAG00000013855	trub1	82	68.085	Poecilia_latipinna
ENSSTOG00000003641	TRUB1	71	68.085	ENSPMEG00000009064	trub1	85	68.085	Poecilia_mexicana
ENSSTOG00000003641	TRUB1	73	66.939	ENSPREG00000003343	trub1	88	66.939	Poecilia_reticulata
ENSSTOG00000003641	TRUB1	95	88.589	ENSPPYG00000002676	TRUB1	86	94.352	Pongo_abelii
ENSSTOG00000003641	TRUB1	99	72.159	ENSPCAG00000008427	TRUB1	89	75.949	Procavia_capensis
ENSSTOG00000003641	TRUB1	100	83.429	ENSPCOG00000024360	TRUB1	86	89.735	Propithecus_coquereli
ENSSTOG00000003641	TRUB1	75	86.742	ENSPVAG00000007575	TRUB1	87	93.886	Pteropus_vampyrus
ENSSTOG00000003641	TRUB1	75	67.063	ENSPNYG00000018614	trub1	91	67.063	Pundamilia_nyererei
ENSSTOG00000003641	TRUB1	78	58.462	ENSPNAG00000006881	trub1	84	58.462	Pygocentrus_nattereri
ENSSTOG00000003641	TRUB1	100	80.175	ENSRNOG00000017321	Trub1	89	85.430	Rattus_norvegicus
ENSSTOG00000003641	TRUB1	99	79.083	ENSRBIG00000033423	TRUB1	89	83.439	Rhinopithecus_bieti
ENSSTOG00000003641	TRUB1	99	87.966	ENSRROG00000033902	TRUB1	90	93.312	Rhinopithecus_roxellana
ENSSTOG00000003641	TRUB1	95	89.189	ENSSBOG00000024237	TRUB1	89	93.631	Saimiri_boliviensis_boliviensis
ENSSTOG00000003641	TRUB1	75	79.842	ENSSHAG00000009346	TRUB1	85	79.842	Sarcophilus_harrisii
ENSSTOG00000003641	TRUB1	72	70.464	ENSSFOG00015022124	trub1	81	70.464	Scleropages_formosus
ENSSTOG00000003641	TRUB1	73	68.699	ENSSMAG00000001020	trub1	88	68.699	Scophthalmus_maximus
ENSSTOG00000003641	TRUB1	72	68.750	ENSSDUG00000016414	trub1	88	68.699	Seriola_dumerili
ENSSTOG00000003641	TRUB1	77	65.490	ENSSLDG00000015486	trub1	94	65.517	Seriola_lalandi_dorsalis
ENSSTOG00000003641	TRUB1	84	76.429	ENSSPUG00000001642	TRUB1	96	76.429	Sphenodon_punctatus
ENSSTOG00000003641	TRUB1	79	65.385	ENSSPAG00000001217	trub1	94	65.385	Stegastes_partitus
ENSSTOG00000003641	TRUB1	100	84.000	ENSSSCG00000010653	TRUB1	86	90.066	Sus_scrofa
ENSSTOG00000003641	TRUB1	81	74.815	ENSTGUG00000010971	TRUB1	97	74.632	Taeniopygia_guttata
ENSSTOG00000003641	TRUB1	76	75.889	ENSTBEG00000002880	TRUB1	99	75.889	Tupaia_belangeri
ENSSTOG00000003641	TRUB1	65	95.833	ENSTTRG00000005767	TRUB1	82	95.833	Tursiops_truncatus
ENSSTOG00000003641	TRUB1	90	95.681	ENSUAMG00000024876	TRUB1	86	95.681	Ursus_americanus
ENSSTOG00000003641	TRUB1	88	95.593	ENSUMAG00000002411	TRUB1	88	95.608	Ursus_maritimus
ENSSTOG00000003641	TRUB1	100	87.143	ENSVPAG00000005507	TRUB1	86	93.377	Vicugna_pacos
ENSSTOG00000003641	TRUB1	100	88.761	ENSVVUG00000010085	TRUB1	73	94.702	Vulpes_vulpes
ENSSTOG00000003641	TRUB1	81	64.706	ENSXETG00000023828	trub1	98	64.706	Xenopus_tropicalis
ENSSTOG00000003641	TRUB1	71	66.809	ENSXCOG00000017847	trub1	83	66.809	Xiphophorus_couchianus
ENSSTOG00000003641	TRUB1	71	67.234	ENSXMAG00000014701	trub1	85	67.234	Xiphophorus_maculatus