EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000006088 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 10049 bases
Position: chrJH393296.1:1180069-1190117
Accession: 101961690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000005452	SMN	PF06003.12	5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000006093	SMNDC1-201	1836	XM_005320666	ENSSTOP00000005452	238 (aa)	XP_005320723	I3M792

Gene Model

Click here to download ENSSTOG00000006088's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000006088's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000006088	SMNDC1	100	99.160	ENSG00000119953	SMNDC1	100	99.160	Homo_sapiens
ENSSTOG00000006088	SMNDC1	100	74.790	ENSAPOG00000021772	smndc1	100	74.790	Acanthochromis_polyacanthus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSAMEG00000005251	SMNDC1	100	99.580	Ailuropoda_melanoleuca
ENSSTOG00000006088	SMNDC1	100	76.050	ENSACIG00000004819	smndc1	100	76.050	Amphilophus_citrinellus
ENSSTOG00000006088	SMNDC1	100	74.790	ENSAOCG00000017869	smndc1	100	74.790	Amphiprion_ocellaris
ENSSTOG00000006088	SMNDC1	100	74.790	ENSAPEG00000007752	smndc1	100	74.790	Amphiprion_percula
ENSSTOG00000006088	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSSTOG00000006088	SMNDC1	83	96.970	ENSAPLG00000004322	SMNDC1	100	96.970	Anas_platyrhynchos
ENSSTOG00000006088	SMNDC1	100	95.378	ENSACAG00000005983	SMNDC1	100	95.378	Anolis_carolinensis
ENSSTOG00000006088	SMNDC1	100	99.580	ENSANAG00000032875	SMNDC1	100	99.580	Aotus_nancymaae
ENSSTOG00000006088	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSSTOG00000006088	SMNDC1	100	76.471	ENSAMXG00000020310	smndc1	100	76.471	Astyanax_mexicanus
ENSSTOG00000006088	SMNDC1	100	99.160	ENSBTAG00000000551	SMNDC1	100	99.160	Bos_taurus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSCJAG00000018624	SMNDC1	100	99.580	Callithrix_jacchus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSCAFG00000010720	SMNDC1	100	99.580	Canis_familiaris
ENSSTOG00000006088	SMNDC1	100	99.580	ENSCAFG00020011913	SMNDC1	100	99.580	Canis_lupus_dingo
ENSSTOG00000006088	SMNDC1	100	99.160	ENSCHIG00000010604	SMNDC1	100	99.160	Capra_hircus
ENSSTOG00000006088	SMNDC1	100	100.000	ENSTSYG00000026454	SMNDC1	100	100.000	Carlito_syrichta
ENSSTOG00000006088	SMNDC1	100	83.750	ENSCAPG00000009132	SMNDC1	100	98.507	Cavia_aperea
ENSSTOG00000006088	SMNDC1	100	98.739	ENSCPOG00000031666	SMNDC1	100	98.739	Cavia_porcellus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSCCAG00000021793	SMNDC1	100	99.580	Cebus_capucinus
ENSSTOG00000006088	SMNDC1	100	99.160	ENSCATG00000035910	SMNDC1	100	99.160	Cercocebus_atys
ENSSTOG00000006088	SMNDC1	100	98.739	ENSCLAG00000002838	SMNDC1	100	98.739	Chinchilla_lanigera
ENSSTOG00000006088	SMNDC1	100	99.580	ENSCSAG00000005169	SMNDC1	100	99.580	Chlorocebus_sabaeus
ENSSTOG00000006088	SMNDC1	81	98.964	ENSCHOG00000002936	SMNDC1	100	98.964	Choloepus_hoffmanni
ENSSTOG00000006088	SMNDC1	100	98.319	ENSCPBG00000012837	SMNDC1	100	98.319	Chrysemys_picta_bellii
ENSSTOG00000006088	SMNDC1	100	78.571	ENSCANG00000036994	-	100	78.571	Colobus_angolensis_palliatus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSCANG00000031720	-	100	99.580	Colobus_angolensis_palliatus
ENSSTOG00000006088	SMNDC1	100	91.597	ENSCANG00000034620	-	100	91.597	Colobus_angolensis_palliatus
ENSSTOG00000006088	SMNDC1	100	98.739	ENSCGRG00001012973	Smndc1	100	98.739	Cricetulus_griseus_chok1gshd
ENSSTOG00000006088	SMNDC1	100	98.739	ENSCGRG00000012396	Smndc1	100	98.739	Cricetulus_griseus_crigri
ENSSTOG00000006088	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSSTOG00000006088	SMNDC1	100	76.471	ENSCVAG00000020432	smndc1	100	76.471	Cyprinodon_variegatus
ENSSTOG00000006088	SMNDC1	100	78.992	ENSDARG00000056235	smndc1	100	78.992	Danio_rerio
ENSSTOG00000006088	SMNDC1	100	99.580	ENSDNOG00000016387	SMNDC1	83	99.580	Dasypus_novemcinctus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSDORG00000023715	Smndc1	100	99.580	Dipodomys_ordii
ENSSTOG00000006088	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSSTOG00000006088	SMNDC1	100	70.954	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSSTOG00000006088	SMNDC1	100	99.580	ENSEASG00005014930	SMNDC1	100	99.580	Equus_asinus_asinus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSECAG00000029973	SMNDC1	100	99.580	Equus_caballus
ENSSTOG00000006088	SMNDC1	83	70.202	ENSEEUG00000013407	-	100	70.202	Erinaceus_europaeus
ENSSTOG00000006088	SMNDC1	100	78.151	ENSELUG00000000227	smndc1	100	78.151	Esox_lucius
ENSSTOG00000006088	SMNDC1	100	99.580	ENSFCAG00000027353	SMNDC1	100	99.580	Felis_catus
ENSSTOG00000006088	SMNDC1	100	96.639	ENSFALG00000002306	SMNDC1	100	96.639	Ficedula_albicollis
ENSSTOG00000006088	SMNDC1	100	98.319	ENSFDAG00000006468	SMNDC1	100	98.319	Fukomys_damarensis
ENSSTOG00000006088	SMNDC1	100	76.050	ENSFHEG00000020150	smndc1	100	76.050	Fundulus_heteroclitus
ENSSTOG00000006088	SMNDC1	100	76.891	ENSGMOG00000016585	smndc1	100	76.891	Gadus_morhua
ENSSTOG00000006088	SMNDC1	100	96.639	ENSGALG00000008561	SMNDC1	100	96.639	Gallus_gallus
ENSSTOG00000006088	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSSTOG00000006088	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSSTOG00000006088	SMNDC1	100	98.319	ENSGAGG00000024547	SMNDC1	100	98.319	Gopherus_agassizii
ENSSTOG00000006088	SMNDC1	100	99.580	ENSGGOG00000010071	SMNDC1	100	99.580	Gorilla_gorilla
ENSSTOG00000006088	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSSTOG00000006088	SMNDC1	100	98.319	ENSHGLG00000013390	-	100	98.319	Heterocephalus_glaber_female
ENSSTOG00000006088	SMNDC1	100	68.443	ENSHGLG00000001157	-	100	65.306	Heterocephalus_glaber_female
ENSSTOG00000006088	SMNDC1	100	98.319	ENSHGLG00100004814	-	100	98.319	Heterocephalus_glaber_male
ENSSTOG00000006088	SMNDC1	100	76.639	ENSHGLG00100004278	-	100	76.230	Heterocephalus_glaber_male
ENSSTOG00000006088	SMNDC1	100	74.477	ENSHCOG00000000783	smndc1	100	74.477	Hippocampus_comes
ENSSTOG00000006088	SMNDC1	100	77.731	ENSIPUG00000004217	smndc1	100	77.731	Ictalurus_punctatus
ENSSTOG00000006088	SMNDC1	100	98.739	ENSJJAG00000019974	Smndc1	100	98.739	Jaculus_jaculus
ENSSTOG00000006088	SMNDC1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSSTOG00000006088	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSSTOG00000006088	SMNDC1	100	84.034	ENSLACG00000007784	SMNDC1	100	84.034	Latimeria_chalumnae
ENSSTOG00000006088	SMNDC1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSSTOG00000006088	SMNDC1	100	99.160	ENSLAFG00000014353	SMNDC1	100	99.160	Loxodonta_africana
ENSSTOG00000006088	SMNDC1	100	99.580	ENSMFAG00000002433	-	100	99.580	Macaca_fascicularis
ENSSTOG00000006088	SMNDC1	100	81.513	ENSMFAG00000038381	-	100	81.513	Macaca_fascicularis
ENSSTOG00000006088	SMNDC1	100	99.580	ENSMMUG00000007775	SMNDC1	100	99.580	Macaca_mulatta
ENSSTOG00000006088	SMNDC1	100	81.513	ENSMMUG00000045875	-	100	81.513	Macaca_mulatta
ENSSTOG00000006088	SMNDC1	100	99.580	ENSMNEG00000042963	-	100	99.580	Macaca_nemestrina
ENSSTOG00000006088	SMNDC1	100	87.815	ENSMNEG00000033853	-	100	87.815	Macaca_nemestrina
ENSSTOG00000006088	SMNDC1	100	93.305	ENSMLEG00000040236	SMNDC1	100	92.887	Mandrillus_leucophaeus
ENSSTOG00000006088	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSSTOG00000006088	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSSTOG00000006088	SMNDC1	84	96.500	ENSMGAG00000010777	SMNDC1	84	96.500	Meleagris_gallopavo
ENSSTOG00000006088	SMNDC1	99	80.169	ENSMAUG00000005459	-	93	80.169	Mesocricetus_auratus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSMAUG00000012243	-	100	99.580	Mesocricetus_auratus
ENSSTOG00000006088	SMNDC1	100	86.555	ENSMICG00000031640	-	100	86.555	Microcebus_murinus
ENSSTOG00000006088	SMNDC1	100	98.739	ENSMICG00000027336	-	100	98.739	Microcebus_murinus
ENSSTOG00000006088	SMNDC1	100	99.160	ENSMOCG00000002458	Smndc1	100	99.160	Microtus_ochrogaster
ENSSTOG00000006088	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSSTOG00000006088	SMNDC1	100	99.580	ENSMODG00000010542	SMNDC1	100	99.580	Monodelphis_domestica
ENSSTOG00000006088	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSSTOG00000006088	SMNDC1	100	98.319	MGP_CAROLIEiJ_G0023072	Smndc1	100	98.319	Mus_caroli
ENSSTOG00000006088	SMNDC1	100	98.739	ENSMUSG00000025024	Smndc1	100	98.739	Mus_musculus
ENSSTOG00000006088	SMNDC1	100	99.160	MGP_PahariEiJ_G0014560	Smndc1	100	99.160	Mus_pahari
ENSSTOG00000006088	SMNDC1	100	98.739	MGP_SPRETEiJ_G0023993	Smndc1	100	98.739	Mus_spretus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSMPUG00000002089	SMNDC1	100	99.580	Mustela_putorius_furo
ENSSTOG00000006088	SMNDC1	100	99.160	ENSMLUG00000016007	SMNDC1	100	99.160	Myotis_lucifugus
ENSSTOG00000006088	SMNDC1	100	99.160	ENSNGAG00000006833	Smndc1	100	99.160	Nannospalax_galili
ENSSTOG00000006088	SMNDC1	100	76.050	ENSNBRG00000017089	smndc1	100	76.050	Neolamprologus_brichardi
ENSSTOG00000006088	SMNDC1	100	99.580	ENSNLEG00000015471	SMNDC1	100	99.580	Nomascus_leucogenys
ENSSTOG00000006088	SMNDC1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSSTOG00000006088	SMNDC1	100	98.739	ENSOPRG00000015348	SMNDC1	100	98.739	Ochotona_princeps
ENSSTOG00000006088	SMNDC1	100	69.328	ENSODEG00000007594	-	100	66.387	Octodon_degus
ENSSTOG00000006088	SMNDC1	100	76.050	ENSONIG00000000434	smndc1	100	76.050	Oreochromis_niloticus
ENSSTOG00000006088	SMNDC1	100	98.319	ENSOANG00000001598	SMNDC1	100	98.319	Ornithorhynchus_anatinus
ENSSTOG00000006088	SMNDC1	100	98.739	ENSOCUG00000008145	-	100	98.739	Oryctolagus_cuniculus
ENSSTOG00000006088	SMNDC1	100	75.210	ENSOCUG00000012274	-	100	76.891	Oryctolagus_cuniculus
ENSSTOG00000006088	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSSTOG00000006088	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSSTOG00000006088	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSSTOG00000006088	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSSTOG00000006088	SMNDC1	100	99.160	ENSOGAG00000000571	SMNDC1	100	99.160	Otolemur_garnettii
ENSSTOG00000006088	SMNDC1	100	99.160	ENSOARG00000009500	SMNDC1	100	99.160	Ovis_aries
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPPAG00000027815	SMNDC1	100	99.580	Pan_paniscus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPPRG00000013749	SMNDC1	100	99.580	Panthera_pardus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPTIG00000011451	SMNDC1	100	99.580	Panthera_tigris_altaica
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPTRG00000002937	SMNDC1	100	99.580	Pan_troglodytes
ENSSTOG00000006088	SMNDC1	100	93.697	ENSPANG00000031346	-	100	93.697	Papio_anubis
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPANG00000020805	-	100	99.580	Papio_anubis
ENSSTOG00000006088	SMNDC1	100	80.252	ENSPKIG00000017164	smndc1	100	80.252	Paramormyrops_kingsleyae
ENSSTOG00000006088	SMNDC1	100	97.899	ENSPSIG00000012257	SMNDC1	100	97.899	Pelodiscus_sinensis
ENSSTOG00000006088	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPEMG00000022058	Smndc1	100	99.580	Peromyscus_maniculatus_bairdii
ENSSTOG00000006088	SMNDC1	100	67.623	ENSPMAG00000007705	smndc1	100	68.033	Petromyzon_marinus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPCIG00000018419	SMNDC1	100	99.580	Phascolarctos_cinereus
ENSSTOG00000006088	SMNDC1	97	63.043	ENSPCIG00000009693	-	100	63.043	Phascolarctos_cinereus
ENSSTOG00000006088	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSSTOG00000006088	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSSTOG00000006088	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSSTOG00000006088	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSSTOG00000006088	SMNDC1	100	99.580	ENSPPYG00000002643	SMNDC1	100	99.580	Pongo_abelii
ENSSTOG00000006088	SMNDC1	81	97.927	ENSPCAG00000016183	SMNDC1	100	97.927	Procavia_capensis
ENSSTOG00000006088	SMNDC1	100	99.160	ENSPCOG00000024343	SMNDC1	100	99.160	Propithecus_coquereli
ENSSTOG00000006088	SMNDC1	100	75.630	ENSPVAG00000004368	SMNDC1	100	75.630	Pteropus_vampyrus
ENSSTOG00000006088	SMNDC1	92	70.222	ENSPNYG00000024093	smndc1	98	70.222	Pundamilia_nyererei
ENSSTOG00000006088	SMNDC1	100	76.891	ENSPNAG00000025285	smndc1	100	76.891	Pygocentrus_nattereri
ENSSTOG00000006088	SMNDC1	100	98.319	ENSRNOG00000014833	Smndc1	100	98.319	Rattus_norvegicus
ENSSTOG00000006088	SMNDC1	100	83.193	ENSRBIG00000032452	-	100	83.193	Rhinopithecus_bieti
ENSSTOG00000006088	SMNDC1	100	99.160	ENSRBIG00000000224	-	100	99.160	Rhinopithecus_bieti
ENSSTOG00000006088	SMNDC1	100	99.580	ENSRROG00000044992	-	100	99.580	Rhinopithecus_roxellana
ENSSTOG00000006088	SMNDC1	100	83.613	ENSRROG00000039125	-	100	83.613	Rhinopithecus_roxellana
ENSSTOG00000006088	SMNDC1	100	99.580	ENSSBOG00000026789	SMNDC1	100	99.580	Saimiri_boliviensis_boliviensis
ENSSTOG00000006088	SMNDC1	100	99.580	ENSSHAG00000015189	SMNDC1	100	99.580	Sarcophilus_harrisii
ENSSTOG00000006088	SMNDC1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSSTOG00000006088	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSSTOG00000006088	SMNDC1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSSTOG00000006088	SMNDC1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSSTOG00000006088	SMNDC1	100	98.739	ENSSARG00000006063	SMNDC1	100	98.739	Sorex_araneus
ENSSTOG00000006088	SMNDC1	100	96.639	ENSSPUG00000004574	SMNDC1	100	96.639	Sphenodon_punctatus
ENSSTOG00000006088	SMNDC1	100	74.370	ENSSPAG00000000338	smndc1	100	74.370	Stegastes_partitus
ENSSTOG00000006088	SMNDC1	100	99.160	ENSSSCG00000030507	SMNDC1	100	99.160	Sus_scrofa
ENSSTOG00000006088	SMNDC1	100	96.639	ENSTGUG00000010599	SMNDC1	100	96.639	Taeniopygia_guttata
ENSSTOG00000006088	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSSTOG00000006088	SMNDC1	100	74.790	ENSTNIG00000013331	smndc1	100	74.790	Tetraodon_nigroviridis
ENSSTOG00000006088	SMNDC1	100	99.160	ENSTBEG00000014337	SMNDC1	100	99.160	Tupaia_belangeri
ENSSTOG00000006088	SMNDC1	100	99.580	ENSUAMG00000008142	SMNDC1	100	99.580	Ursus_americanus
ENSSTOG00000006088	SMNDC1	100	99.580	ENSUMAG00000023722	SMNDC1	100	99.580	Ursus_maritimus
ENSSTOG00000006088	SMNDC1	83	100.000	ENSVPAG00000003402	SMNDC1	100	100.000	Vicugna_pacos
ENSSTOG00000006088	SMNDC1	100	99.580	ENSVVUG00000007820	SMNDC1	100	99.580	Vulpes_vulpes
ENSSTOG00000006088	SMNDC1	60	82.394	ENSXETG00000015415	SMNDC1	100	82.394	Xenopus_tropicalis
ENSSTOG00000006088	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSSTOG00000006088	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus