EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000007548 (Gene tree)
Gene ID: 101960236
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 14808 bases
Position: chrJH393285.1:9933163-9947970
Accession: 101960236
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000006741	HVSL	PF09749.9	1.2e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000007543	USB1-201	2354	XM_005318236	ENSSTOP00000006741	273 (aa)	XP_005318293	I3M9Y2

Gene Model

Click here to download ENSSTOG00000007548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000007548's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000007548	USB1	100	83.516	ENSG00000103005	USB1	100	87.850	Homo_sapiens
ENSSTOG00000007548	USB1	98	47.143	ENSAPOG00000011942	usb1	99	46.429	Acanthochromis_polyacanthus
ENSSTOG00000007548	USB1	100	85.348	ENSAMEG00000017205	USB1	100	84.982	Ailuropoda_melanoleuca
ENSSTOG00000007548	USB1	86	52.340	ENSACIG00000012234	usb1	86	52.340	Amphilophus_citrinellus
ENSSTOG00000007548	USB1	98	48.227	ENSAOCG00000014831	usb1	99	48.227	Amphiprion_ocellaris
ENSSTOG00000007548	USB1	98	48.582	ENSAPEG00000000296	usb1	99	48.582	Amphiprion_percula
ENSSTOG00000007548	USB1	98	49.466	ENSATEG00000009348	usb1	99	49.466	Anabas_testudineus
ENSSTOG00000007548	USB1	82	72.124	ENSAPLG00000002756	USB1	100	72.124	Anas_platyrhynchos
ENSSTOG00000007548	USB1	83	63.319	ENSACAG00000015481	USB1	100	63.319	Anolis_carolinensis
ENSSTOG00000007548	USB1	100	83.150	ENSANAG00000035640	USB1	100	83.150	Aotus_nancymaae
ENSSTOG00000007548	USB1	82	53.571	ENSACLG00000020586	usb1	99	47.703	Astatotilapia_calliptera
ENSSTOG00000007548	USB1	82	50.667	ENSAMXG00000040146	usb1	75	50.667	Astyanax_mexicanus
ENSSTOG00000007548	USB1	100	83.150	ENSBTAG00000015758	USB1	100	82.418	Bos_taurus
ENSSTOG00000007548	USB1	100	84.615	ENSCJAG00000011733	USB1	100	84.615	Callithrix_jacchus
ENSSTOG00000007548	USB1	99	83.456	ENSCAFG00000008556	USB1	73	83.456	Canis_familiaris
ENSSTOG00000007548	USB1	99	80.882	ENSCAFG00020009263	USB1	99	78.648	Canis_lupus_dingo
ENSSTOG00000007548	USB1	100	80.952	ENSCHIG00000024290	USB1	100	80.586	Capra_hircus
ENSSTOG00000007548	USB1	100	86.447	ENSTSYG00000006997	USB1	100	85.714	Carlito_syrichta
ENSSTOG00000007548	USB1	85	72.414	ENSCAPG00000009057	USB1	100	72.414	Cavia_aperea
ENSSTOG00000007548	USB1	100	81.685	ENSCPOG00000014325	USB1	100	81.319	Cavia_porcellus
ENSSTOG00000007548	USB1	100	83.883	ENSCCAG00000022132	USB1	100	83.883	Cebus_capucinus
ENSSTOG00000007548	USB1	100	84.249	ENSCATG00000032174	USB1	100	84.672	Cercocebus_atys
ENSSTOG00000007548	USB1	64	89.773	ENSCLAG00000007363	USB1	100	89.773	Chinchilla_lanigera
ENSSTOG00000007548	USB1	100	84.615	ENSCSAG00000004783	USB1	100	85.036	Chlorocebus_sabaeus
ENSSTOG00000007548	USB1	88	68.750	ENSCPBG00000026943	USB1	100	62.898	Chrysemys_picta_bellii
ENSSTOG00000007548	USB1	82	30.962	ENSCING00000011490	-	86	30.962	Ciona_intestinalis
ENSSTOG00000007548	USB1	89	87.243	ENSCANG00000037135	USB1	100	83.942	Colobus_angolensis_palliatus
ENSSTOG00000007548	USB1	100	82.784	ENSCGRG00001011243	USB1	100	82.784	Cricetulus_griseus_chok1gshd
ENSSTOG00000007548	USB1	100	82.784	ENSCGRG00000013252	USB1	100	82.784	Cricetulus_griseus_crigri
ENSSTOG00000007548	USB1	98	48.175	ENSCSEG00000013881	usb1	99	48.175	Cynoglossus_semilaevis
ENSSTOG00000007548	USB1	82	50.000	ENSCVAG00000009252	usb1	97	50.439	Cyprinodon_variegatus
ENSSTOG00000007548	USB1	88	48.954	ENSDARG00000003841	usb1	87	48.954	Danio_rerio
ENSSTOG00000007548	USB1	100	81.319	ENSDORG00000001888	Usb1	100	81.319	Dipodomys_ordii
ENSSTOG00000007548	USB1	75	42.381	FBgn0037713	CG16790	78	41.429	Drosophila_melanogaster
ENSSTOG00000007548	USB1	100	67.766	ENSETEG00000019682	USB1	100	67.766	Echinops_telfairi
ENSSTOG00000007548	USB1	81	50.450	ENSEBUG00000005889	usb1	78	50.450	Eptatretus_burgeri
ENSSTOG00000007548	USB1	100	84.982	ENSEASG00005005484	USB1	100	84.249	Equus_asinus_asinus
ENSSTOG00000007548	USB1	100	84.249	ENSECAG00000019493	USB1	91	83.883	Equus_caballus
ENSSTOG00000007548	USB1	64	81.818	ENSEEUG00000000154	USB1	100	60.440	Erinaceus_europaeus
ENSSTOG00000007548	USB1	83	48.684	ENSELUG00000010974	usb1	84	48.684	Esox_lucius
ENSSTOG00000007548	USB1	100	84.982	ENSFCAG00000002693	USB1	100	84.249	Felis_catus
ENSSTOG00000007548	USB1	82	66.964	ENSFALG00000006876	USB1	99	61.905	Ficedula_albicollis
ENSSTOG00000007548	USB1	100	84.249	ENSFDAG00000010052	USB1	100	83.883	Fukomys_damarensis
ENSSTOG00000007548	USB1	86	48.980	ENSFHEG00000012334	usb1	96	47.934	Fundulus_heteroclitus
ENSSTOG00000007548	USB1	82	50.673	ENSGMOG00000004228	usb1	99	50.673	Gadus_morhua
ENSSTOG00000007548	USB1	82	71.111	ENSGALG00000035604	USB1	100	65.455	Gallus_gallus
ENSSTOG00000007548	USB1	98	49.275	ENSGAFG00000021890	usb1	99	48.736	Gambusia_affinis
ENSSTOG00000007548	USB1	82	53.125	ENSGACG00000003257	usb1	81	53.125	Gasterosteus_aculeatus
ENSSTOG00000007548	USB1	100	63.370	ENSGAGG00000022572	USB1	100	63.370	Gopherus_agassizii
ENSSTOG00000007548	USB1	100	82.418	ENSGGOG00000017147	USB1	100	84.249	Gorilla_gorilla
ENSSTOG00000007548	USB1	83	53.744	ENSHBUG00000009823	usb1	99	49.117	Haplochromis_burtoni
ENSSTOG00000007548	USB1	100	84.249	ENSHGLG00000016078	USB1	98	83.883	Heterocephalus_glaber_female
ENSSTOG00000007548	USB1	100	84.249	ENSHGLG00100005562	USB1	98	83.883	Heterocephalus_glaber_male
ENSSTOG00000007548	USB1	87	50.206	ENSHCOG00000015633	usb1	99	48.718	Hippocampus_comes
ENSSTOG00000007548	USB1	98	47.569	ENSIPUG00000008601	usb1	79	53.509	Ictalurus_punctatus
ENSSTOG00000007548	USB1	100	84.982	ENSJJAG00000021859	Usb1	100	84.615	Jaculus_jaculus
ENSSTOG00000007548	USB1	83	51.982	ENSKMAG00000007200	usb1	99	47.687	Kryptolebias_marmoratus
ENSSTOG00000007548	USB1	73	52.525	ENSLBEG00000008452	usb1	64	53.684	Labrus_bergylta
ENSSTOG00000007548	USB1	95	52.632	ENSLACG00000000105	USB1	81	58.120	Latimeria_chalumnae
ENSSTOG00000007548	USB1	88	55.918	ENSLOCG00000000465	usb1	87	55.918	Lepisosteus_oculatus
ENSSTOG00000007548	USB1	100	65.818	ENSLAFG00000002267	USB1	100	66.182	Loxodonta_africana
ENSSTOG00000007548	USB1	100	84.615	ENSMFAG00000003926	USB1	100	85.036	Macaca_fascicularis
ENSSTOG00000007548	USB1	100	84.615	ENSMMUG00000022669	USB1	100	85.036	Macaca_mulatta
ENSSTOG00000007548	USB1	100	84.249	ENSMNEG00000042487	USB1	100	84.672	Macaca_nemestrina
ENSSTOG00000007548	USB1	100	84.615	ENSMLEG00000028756	USB1	100	85.036	Mandrillus_leucophaeus
ENSSTOG00000007548	USB1	98	48.571	ENSMAMG00000015092	usb1	99	48.736	Mastacembelus_armatus
ENSSTOG00000007548	USB1	82	53.571	ENSMZEG00005010008	usb1	99	48.410	Maylandia_zebra
ENSSTOG00000007548	USB1	100	82.051	ENSMAUG00000007832	Usb1	100	82.051	Mesocricetus_auratus
ENSSTOG00000007548	USB1	100	83.883	ENSMICG00000004900	USB1	100	85.714	Microcebus_murinus
ENSSTOG00000007548	USB1	100	81.319	ENSMOCG00000022647	Usb1	100	81.319	Microtus_ochrogaster
ENSSTOG00000007548	USB1	83	52.655	ENSMMOG00000000490	usb1	88	52.655	Mola_mola
ENSSTOG00000007548	USB1	100	65.000	ENSMODG00000014067	USB1	100	64.835	Monodelphis_domestica
ENSSTOG00000007548	USB1	83	53.744	ENSMALG00000005930	usb1	99	49.822	Monopterus_albus
ENSSTOG00000007548	USB1	100	80.586	MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	Mus_caroli
ENSSTOG00000007548	USB1	100	80.952	ENSMUSG00000031792	Usb1	100	85.841	Mus_musculus
ENSSTOG00000007548	USB1	100	79.853	MGP_PahariEiJ_G0023019	Usb1	100	85.470	Mus_pahari
ENSSTOG00000007548	USB1	100	80.220	MGP_SPRETEiJ_G0032540	Usb1	100	79.853	Mus_spretus
ENSSTOG00000007548	USB1	100	82.784	ENSMPUG00000004684	USB1	96	82.784	Mustela_putorius_furo
ENSSTOG00000007548	USB1	85	89.177	ENSMLUG00000007400	USB1	100	89.177	Myotis_lucifugus
ENSSTOG00000007548	USB1	100	84.615	ENSNGAG00000009703	Usb1	100	84.615	Nannospalax_galili
ENSSTOG00000007548	USB1	85	47.639	ENSNBRG00000008747	usb1	99	52.804	Neolamprologus_brichardi
ENSSTOG00000007548	USB1	95	82.171	ENSNLEG00000003340	USB1	100	83.721	Nomascus_leucogenys
ENSSTOG00000007548	USB1	58	57.962	ENSMEUG00000003328	-	100	57.962	Notamacropus_eugenii
ENSSTOG00000007548	USB1	62	91.176	ENSOPRG00000011803	USB1	72	91.176	Ochotona_princeps
ENSSTOG00000007548	USB1	100	82.051	ENSODEG00000016214	USB1	100	81.685	Octodon_degus
ENSSTOG00000007548	USB1	98	49.648	ENSONIG00000011063	usb1	99	47.703	Oreochromis_niloticus
ENSSTOG00000007548	USB1	82	72.889	ENSOANG00000012118	USB1	94	72.889	Ornithorhynchus_anatinus
ENSSTOG00000007548	USB1	82	51.339	ENSORLG00000012479	usb1	82	51.339	Oryzias_latipes
ENSSTOG00000007548	USB1	82	51.339	ENSORLG00020018671	usb1	82	51.339	Oryzias_latipes_hni
ENSSTOG00000007548	USB1	82	51.339	ENSORLG00015009679	usb1	83	51.339	Oryzias_latipes_hsok
ENSSTOG00000007548	USB1	82	50.893	ENSOMEG00000012930	usb1	81	50.893	Oryzias_melastigma
ENSSTOG00000007548	USB1	100	78.022	ENSOGAG00000003273	USB1	100	78.022	Otolemur_garnettii
ENSSTOG00000007548	USB1	89	84.774	ENSOARG00000001107	USB1	93	84.774	Ovis_aries
ENSSTOG00000007548	USB1	100	83.883	ENSPPAG00000042137	USB1	100	83.883	Pan_paniscus
ENSSTOG00000007548	USB1	100	84.615	ENSPPRG00000024797	USB1	100	84.982	Panthera_pardus
ENSSTOG00000007548	USB1	100	84.615	ENSPTIG00000007506	USB1	100	84.982	Panthera_tigris_altaica
ENSSTOG00000007548	USB1	100	75.458	ENSPTRG00000008172	USB1	100	88.785	Pan_troglodytes
ENSSTOG00000007548	USB1	100	84.615	ENSPANG00000025138	USB1	100	85.036	Papio_anubis
ENSSTOG00000007548	USB1	96	50.190	ENSPKIG00000015109	usb1	75	55.605	Paramormyrops_kingsleyae
ENSSTOG00000007548	USB1	82	51.477	ENSPSIG00000004305	USB1	100	51.477	Pelodiscus_sinensis
ENSSTOG00000007548	USB1	82	52.444	ENSPMGG00000017725	usb1	86	52.444	Periophthalmus_magnuspinnatus
ENSSTOG00000007548	USB1	100	82.784	ENSPEMG00000016183	Usb1	100	83.883	Peromyscus_maniculatus_bairdii
ENSSTOG00000007548	USB1	85	50.638	ENSPMAG00000000462	usb1	99	50.638	Petromyzon_marinus
ENSSTOG00000007548	USB1	98	49.097	ENSPFOG00000011130	usb1	99	48.014	Poecilia_formosa
ENSSTOG00000007548	USB1	98	49.097	ENSPLAG00000009820	usb1	99	48.014	Poecilia_latipinna
ENSSTOG00000007548	USB1	98	48.736	ENSPMEG00000006402	usb1	99	48.188	Poecilia_mexicana
ENSSTOG00000007548	USB1	86	49.383	ENSPREG00000001047	usb1	98	49.587	Poecilia_reticulata
ENSSTOG00000007548	USB1	95	78.846	ENSPPYG00000007401	USB1	100	80.385	Pongo_abelii
ENSSTOG00000007548	USB1	100	86.447	ENSPCOG00000022612	USB1	100	86.447	Propithecus_coquereli
ENSSTOG00000007548	USB1	100	81.685	ENSPVAG00000004613	USB1	100	81.685	Pteropus_vampyrus
ENSSTOG00000007548	USB1	98	50.352	ENSPNYG00000022262	usb1	99	49.470	Pundamilia_nyererei
ENSSTOG00000007548	USB1	88	50.209	ENSPNAG00000011736	usb1	81	50.209	Pygocentrus_nattereri
ENSSTOG00000007548	USB1	100	82.784	ENSRNOG00000013216	Usb1	100	82.418	Rattus_norvegicus
ENSSTOG00000007548	USB1	100	76.557	ENSRBIG00000044466	USB1	100	89.720	Rhinopithecus_bieti
ENSSTOG00000007548	USB1	100	84.249	ENSRROG00000029211	USB1	100	84.672	Rhinopithecus_roxellana
ENSSTOG00000007548	USB1	100	81.685	ENSSBOG00000029362	USB1	100	83.150	Saimiri_boliviensis_boliviensis
ENSSTOG00000007548	USB1	80	72.603	ENSSHAG00000006993	USB1	97	69.512	Sarcophilus_harrisii
ENSSTOG00000007548	USB1	82	57.778	ENSSFOG00015023663	usb1	71	57.778	Scleropages_formosus
ENSSTOG00000007548	USB1	98	47.552	ENSSMAG00000015834	usb1	99	46.599	Scophthalmus_maximus
ENSSTOG00000007548	USB1	83	55.310	ENSSDUG00000002949	usb1	84	55.310	Seriola_dumerili
ENSSTOG00000007548	USB1	84	54.825	ENSSLDG00000014174	usb1	83	53.648	Seriola_lalandi_dorsalis
ENSSTOG00000007548	USB1	78	67.757	ENSSPUG00000006741	USB1	100	67.757	Sphenodon_punctatus
ENSSTOG00000007548	USB1	98	47.719	ENSSPAG00000007484	usb1	80	52.423	Stegastes_partitus
ENSSTOG00000007548	USB1	100	82.784	ENSSSCG00000002807	USB1	100	83.150	Sus_scrofa
ENSSTOG00000007548	USB1	78	70.283	ENSTGUG00000004792	USB1	91	66.525	Taeniopygia_guttata
ENSSTOG00000007548	USB1	98	47.080	ENSTRUG00000021069	usb1	99	47.015	Takifugu_rubripes
ENSSTOG00000007548	USB1	98	47.015	ENSTNIG00000000626	usb1	84	47.788	Tetraodon_nigroviridis
ENSSTOG00000007548	USB1	85	61.638	ENSTBEG00000001507	USB1	100	61.638	Tupaia_belangeri
ENSSTOG00000007548	USB1	100	85.348	ENSUAMG00000016823	USB1	100	85.714	Ursus_americanus
ENSSTOG00000007548	USB1	78	87.850	ENSUMAG00000021369	USB1	100	87.850	Ursus_maritimus
ENSSTOG00000007548	USB1	99	83.088	ENSVVUG00000023700	USB1	89	87.446	Vulpes_vulpes
ENSSTOG00000007548	USB1	79	55.963	ENSXETG00000013795	usb1	94	54.237	Xenopus_tropicalis
ENSSTOG00000007548	USB1	97	48.302	ENSXMAG00000024687	usb1	79	49.794	Xiphophorus_maculatus