EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000007572 (Gene tree)
Gene ID: 101958040
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 165572 bases
Position: chrJH393279.1:40162576-40328147
Accession: 101958040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000027755	R3H	PF01424.22	2.8e-12	1	1
ENSSTOP00000024495	R3H	PF01424.22	6.2e-12	1	1
ENSSTOP00000030713	R3H	PF01424.22	7.2e-12	1	1
ENSSTOP00000006799	R3H	PF01424.22	1.8e-11	1	1
ENSSTOP00000027886	R3H	PF01424.22	1.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000007604	R3HDM1-202	4944	XM_005315843	ENSSTOP00000006799	1101 (aa)	XP_005315900	I3MA25
ENSSTOT00000041398	R3HDM1-205	861	-	ENSSTOP00000027755	287 (aa)	-	A0A287D2L9
ENSSTOT00000036870	R3HDM1-204	1458	-	ENSSTOP00000024495	486 (aa)	-	A0A287CT35
ENSSTOT00000038717	R3HDM1-201	5046	XM_005315841	ENSSTOP00000027886	1135 (aa)	XP_021576746	A0A287D2S8
ENSSTOT00000042243	R3HDM1-203	2097	-	ENSSTOP00000030713	549 (aa)	-	A0A287DAZ5

Gene Model

Click here to download ENSSTOG00000007572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000007572's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000007572	R3HDM1	86	60.159	ENSSTOG00000013424	R3HDM2	96	54.034
ENSSTOG00000007572	R3HDM1	92	51.724	ENSSTOG00000008350	ARPP21	95	47.268

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000007572	R3HDM1	100	96.502	ENSG00000048991	R3HDM1	100	95.459	Homo_sapiens
ENSSTOG00000007572	R3HDM1	100	64.883	ENSAPOG00000020850	r3hdm1	97	49.490	Acanthochromis_polyacanthus
ENSSTOG00000007572	R3HDM1	99	97.232	ENSAMEG00000014886	R3HDM1	100	95.195	Ailuropoda_melanoleuca
ENSSTOG00000007572	R3HDM1	90	56.027	ENSACIG00000018791	-	81	57.664	Amphilophus_citrinellus
ENSSTOG00000007572	R3HDM1	100	64.548	ENSAOCG00000005192	r3hdm1	99	48.980	Amphiprion_ocellaris
ENSSTOG00000007572	R3HDM1	100	60.068	ENSAPEG00000016108	r3hdm1	99	46.988	Amphiprion_percula
ENSSTOG00000007572	R3HDM1	100	59.247	ENSATEG00000000232	r3hdm1	99	46.274	Anabas_testudineus
ENSSTOG00000007572	R3HDM1	100	80.066	ENSAPLG00000015231	R3HDM1	100	79.494	Anas_platyrhynchos
ENSSTOG00000007572	R3HDM1	100	79.283	ENSACAG00000001676	R3HDM1	100	79.633	Anolis_carolinensis
ENSSTOG00000007572	R3HDM1	99	96.679	ENSANAG00000035334	R3HDM1	100	95.100	Aotus_nancymaae
ENSSTOG00000007572	R3HDM1	100	57.679	ENSACLG00000027282	r3hdm1	94	49.675	Astatotilapia_calliptera
ENSSTOG00000007572	R3HDM1	79	56.034	ENSAMXG00000020587	arpp21	62	57.895	Astyanax_mexicanus
ENSSTOG00000007572	R3HDM1	99	69.608	ENSAMXG00000012861	R3HDM1	100	72.356	Astyanax_mexicanus
ENSSTOG00000007572	R3HDM1	100	61.613	ENSAMXG00000003536	r3hdm1	100	62.558	Astyanax_mexicanus
ENSSTOG00000007572	R3HDM1	99	95.756	ENSBTAG00000013302	R3HDM1	100	93.931	Bos_taurus
ENSSTOG00000007572	R3HDM1	99	96.494	ENSCJAG00000011718	R3HDM1	100	95.005	Callithrix_jacchus
ENSSTOG00000007572	R3HDM1	99	97.048	ENSCAFG00000005075	R3HDM1	100	95.467	Canis_familiaris
ENSSTOG00000007572	R3HDM1	99	97.048	ENSCAFG00020016119	R3HDM1	100	95.376	Canis_lupus_dingo
ENSSTOG00000007572	R3HDM1	99	95.756	ENSCHIG00000020851	R3HDM1	100	94.016	Capra_hircus
ENSSTOG00000007572	R3HDM1	100	81.185	ENSCAPG00000013043	-	100	81.185	Cavia_aperea
ENSSTOG00000007572	R3HDM1	99	93.911	ENSCPOG00000012784	R3HDM1	100	93.882	Cavia_porcellus
ENSSTOG00000007572	R3HDM1	100	96.091	ENSCCAG00000027199	R3HDM1	100	95.005	Cebus_capucinus
ENSSTOG00000007572	R3HDM1	100	96.893	ENSCATG00000023642	R3HDM1	100	95.186	Cercocebus_atys
ENSSTOG00000007572	R3HDM1	100	95.267	ENSCLAG00000007962	R3HDM1	100	95.267	Chinchilla_lanigera
ENSSTOG00000007572	R3HDM1	99	96.679	ENSCSAG00000016356	R3HDM1	100	94.978	Chlorocebus_sabaeus
ENSSTOG00000007572	R3HDM1	87	83.151	ENSCHOG00000013638	R3HDM1	91	83.151	Choloepus_hoffmanni
ENSSTOG00000007572	R3HDM1	92	77.514	ENSCPBG00000009645	R3HDM1	100	90.037	Chrysemys_picta_bellii
ENSSTOG00000007572	R3HDM1	99	96.494	ENSCANG00000034748	R3HDM1	100	94.646	Colobus_angolensis_palliatus
ENSSTOG00000007572	R3HDM1	99	94.465	ENSCGRG00001012357	R3hdm1	97	92.504	Cricetulus_griseus_chok1gshd
ENSSTOG00000007572	R3HDM1	100	94.774	ENSCGRG00000012080	R3hdm1	100	94.774	Cricetulus_griseus_crigri
ENSSTOG00000007572	R3HDM1	100	58.219	ENSCSEG00000008944	r3hdm1	92	55.814	Cynoglossus_semilaevis
ENSSTOG00000007572	R3HDM1	100	63.880	ENSCVAG00000007582	r3hdm1	99	47.668	Cyprinodon_variegatus
ENSSTOG00000007572	R3HDM1	89	48.175	ENSDARG00000061081	arpp21	89	35.405	Danio_rerio
ENSSTOG00000007572	R3HDM1	100	90.450	ENSDNOG00000000771	R3HDM1	100	90.450	Dasypus_novemcinctus
ENSSTOG00000007572	R3HDM1	100	95.819	ENSDORG00000027689	-	100	95.819	Dipodomys_ordii
ENSSTOG00000007572	R3HDM1	100	86.379	ENSETEG00000013606	R3HDM1	100	82.699	Echinops_telfairi
ENSSTOG00000007572	R3HDM1	89	48.030	ENSEBUG00000014746	arpp21	99	41.558	Eptatretus_burgeri
ENSSTOG00000007572	R3HDM1	99	96.679	ENSEASG00005007392	R3HDM1	100	96.305	Equus_asinus_asinus
ENSSTOG00000007572	R3HDM1	100	96.167	ENSECAG00000019114	R3HDM1	100	96.305	Equus_caballus
ENSSTOG00000007572	R3HDM1	99	85.424	ENSEEUG00000012589	R3HDM1	91	85.424	Erinaceus_europaeus
ENSSTOG00000007572	R3HDM1	80	79.828	ENSELUG00000004909	R3HDM1	99	55.369	Esox_lucius
ENSSTOG00000007572	R3HDM1	77	69.196	ENSELUG00000014413	r3hdm1	100	52.115	Esox_lucius
ENSSTOG00000007572	R3HDM1	100	96.502	ENSFCAG00000027113	R3HDM1	100	96.798	Felis_catus
ENSSTOG00000007572	R3HDM1	99	81.250	ENSFALG00000013731	R3HDM1	72	75.204	Ficedula_albicollis
ENSSTOG00000007572	R3HDM1	100	95.267	ENSFDAG00000016478	R3HDM1	100	95.267	Fukomys_damarensis
ENSSTOG00000007572	R3HDM1	100	65.529	ENSFHEG00000018713	r3hdm1	100	47.676	Fundulus_heteroclitus
ENSSTOG00000007572	R3HDM1	78	71.353	ENSGMOG00000006042	-	74	68.696	Gadus_morhua
ENSSTOG00000007572	R3HDM1	100	74.913	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSSTOG00000007572	R3HDM1	100	59.727	ENSGAFG00000006203	r3hdm1	94	49.566	Gambusia_affinis
ENSSTOG00000007572	R3HDM1	80	72.034	ENSGACG00000014925	r3hdm1	99	48.664	Gasterosteus_aculeatus
ENSSTOG00000007572	R3HDM1	100	83.885	ENSGAGG00000007840	R3HDM1	100	77.868	Gopherus_agassizii
ENSSTOG00000007572	R3HDM1	100	96.502	ENSGGOG00000008156	R3HDM1	100	95.186	Gorilla_gorilla
ENSSTOG00000007572	R3HDM1	100	62.876	ENSHBUG00000015737	R3HDM1	90	58.206	Haplochromis_burtoni
ENSSTOG00000007572	R3HDM1	100	95.264	ENSHGLG00000015718	R3HDM1	100	95.264	Heterocephalus_glaber_female
ENSSTOG00000007572	R3HDM1	100	69.810	ENSHGLG00100015374	-	100	69.810	Heterocephalus_glaber_male
ENSSTOG00000007572	R3HDM1	100	95.062	ENSHGLG00100003184	-	100	95.062	Heterocephalus_glaber_male
ENSSTOG00000007572	R3HDM1	82	59.512	ENSHCOG00000013366	r3hdm1	88	59.500	Hippocampus_comes
ENSSTOG00000007572	R3HDM1	56	69.091	ENSHCOG00000005036	-	56	80.000	Hippocampus_comes
ENSSTOG00000007572	R3HDM1	91	62.637	ENSIPUG00000013629	r3hdm1	95	68.536	Ictalurus_punctatus
ENSSTOG00000007572	R3HDM1	99	70.508	ENSIPUG00000001676	R3HDM1	99	66.029	Ictalurus_punctatus
ENSSTOG00000007572	R3HDM1	69	55.357	ENSIPUG00000020552	arpp21	80	44.590	Ictalurus_punctatus
ENSSTOG00000007572	R3HDM1	100	94.425	ENSJJAG00000018208	-	100	94.425	Jaculus_jaculus
ENSSTOG00000007572	R3HDM1	59	77.193	ENSKMAG00000013373	-	89	77.193	Kryptolebias_marmoratus
ENSSTOG00000007572	R3HDM1	100	58.362	ENSLBEG00000027981	-	94	60.959	Labrus_bergylta
ENSSTOG00000007572	R3HDM1	100	73.701	ENSLACG00000005334	R3HDM1	100	73.115	Latimeria_chalumnae
ENSSTOG00000007572	R3HDM1	99	72.368	ENSLOCG00000001641	r3hdm1	100	66.726	Lepisosteus_oculatus
ENSSTOG00000007572	R3HDM1	99	96.125	ENSLAFG00000009065	R3HDM1	100	93.931	Loxodonta_africana
ENSSTOG00000007572	R3HDM1	99	96.863	ENSMFAG00000030331	R3HDM1	100	96.798	Macaca_fascicularis
ENSSTOG00000007572	R3HDM1	100	95.277	ENSMMUG00000009844	R3HDM1	100	95.277	Macaca_mulatta
ENSSTOG00000007572	R3HDM1	99	96.863	ENSMNEG00000027793	R3HDM1	100	96.798	Macaca_nemestrina
ENSSTOG00000007572	R3HDM1	99	96.863	ENSMLEG00000043189	R3HDM1	100	95.459	Mandrillus_leucophaeus
ENSSTOG00000007572	R3HDM1	100	64.846	ENSMAMG00000004532	r3hdm1	99	48.790	Mastacembelus_armatus
ENSSTOG00000007572	R3HDM1	100	62.876	ENSMZEG00005003157	r3hdm1	93	58.206	Maylandia_zebra
ENSSTOG00000007572	R3HDM1	100	79.402	ENSMGAG00000012461	R3HDM1	100	78.862	Meleagris_gallopavo
ENSSTOG00000007572	R3HDM1	100	95.122	ENSMAUG00000010315	R3hdm1	100	95.122	Mesocricetus_auratus
ENSSTOG00000007572	R3HDM1	100	96.296	ENSMICG00000005900	-	100	94.027	Microcebus_murinus
ENSSTOG00000007572	R3HDM1	100	83.972	ENSMICG00000042655	-	100	89.716	Microcebus_murinus
ENSSTOG00000007572	R3HDM1	100	95.470	ENSMOCG00000019833	-	100	95.470	Microtus_ochrogaster
ENSSTOG00000007572	R3HDM1	99	86.799	ENSMODG00000000923	R3HDM1	97	80.133	Monodelphis_domestica
ENSSTOG00000007572	R3HDM1	100	65.646	ENSMALG00000009000	r3hdm1	100	46.560	Monopterus_albus
ENSSTOG00000007572	R3HDM1	100	94.774	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.774	Mus_caroli
ENSSTOG00000007572	R3HDM1	100	94.774	ENSMUSG00000056211	R3hdm1	100	94.774	Mus_musculus
ENSSTOG00000007572	R3HDM1	100	94.425	MGP_PahariEiJ_G0027779	R3hdm1	100	94.425	Mus_pahari
ENSSTOG00000007572	R3HDM1	100	94.774	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.774	Mus_spretus
ENSSTOG00000007572	R3HDM1	99	97.232	ENSMPUG00000002412	R3HDM1	100	95.104	Mustela_putorius_furo
ENSSTOG00000007572	R3HDM1	99	95.387	ENSMLUG00000013824	R3HDM1	100	93.309	Myotis_lucifugus
ENSSTOG00000007572	R3HDM1	100	94.425	ENSNGAG00000001313	-	100	94.425	Nannospalax_galili
ENSSTOG00000007572	R3HDM1	100	96.296	ENSNLEG00000008622	R3HDM1	100	95.277	Nomascus_leucogenys
ENSSTOG00000007572	R3HDM1	99	76.937	ENSMEUG00000011784	R3HDM1	100	72.838	Notamacropus_eugenii
ENSSTOG00000007572	R3HDM1	100	95.473	ENSODEG00000008607	R3HDM1	100	95.473	Octodon_degus
ENSSTOG00000007572	R3HDM1	91	60.215	ENSONIG00000012017	r3hdm1	98	48.289	Oreochromis_niloticus
ENSSTOG00000007572	R3HDM1	100	85.714	ENSOANG00000007987	R3HDM1	100	81.244	Ornithorhynchus_anatinus
ENSSTOG00000007572	R3HDM1	99	97.048	ENSOCUG00000017366	R3HDM1	98	94.512	Oryctolagus_cuniculus
ENSSTOG00000007572	R3HDM1	100	64.846	ENSORLG00000004297	r3hdm1	99	45.837	Oryzias_latipes
ENSSTOG00000007572	R3HDM1	100	64.846	ENSORLG00020019252	-	93	60.287	Oryzias_latipes_hni
ENSSTOG00000007572	R3HDM1	100	64.505	ENSORLG00015017355	r3hdm1	99	46.154	Oryzias_latipes_hsok
ENSSTOG00000007572	R3HDM1	100	64.000	ENSOMEG00000003882	-	94	57.935	Oryzias_melastigma
ENSSTOG00000007572	R3HDM1	99	96.679	ENSOGAG00000003136	R3HDM1	100	93.654	Otolemur_garnettii
ENSSTOG00000007572	R3HDM1	99	95.756	ENSOARG00000010788	R3HDM1	100	93.654	Ovis_aries
ENSSTOG00000007572	R3HDM1	100	96.502	ENSPPAG00000027858	R3HDM1	100	94.742	Pan_paniscus
ENSSTOG00000007572	R3HDM1	100	96.502	ENSPPRG00000002626	R3HDM1	100	94.651	Panthera_pardus
ENSSTOG00000007572	R3HDM1	100	96.708	ENSPTIG00000016581	R3HDM1	100	94.651	Panthera_tigris_altaica
ENSSTOG00000007572	R3HDM1	100	96.502	ENSPTRG00000012494	R3HDM1	100	94.651	Pan_troglodytes
ENSSTOG00000007572	R3HDM1	99	96.679	ENSPANG00000026448	R3HDM1	100	95.368	Papio_anubis
ENSSTOG00000007572	R3HDM1	100	66.897	ENSPKIG00000011224	R3HDM1	90	65.366	Paramormyrops_kingsleyae
ENSSTOG00000007572	R3HDM1	97	66.901	ENSPKIG00000004328	r3hdm1	91	76.190	Paramormyrops_kingsleyae
ENSSTOG00000007572	R3HDM1	95	85.000	ENSPSIG00000012915	R3HDM1	100	77.939	Pelodiscus_sinensis
ENSSTOG00000007572	R3HDM1	87	54.324	ENSPMGG00000011264	-	91	55.023	Periophthalmus_magnuspinnatus
ENSSTOG00000007572	R3HDM1	100	94.774	ENSPEMG00000015187	R3hdm1	100	94.774	Peromyscus_maniculatus_bairdii
ENSSTOG00000007572	R3HDM1	80	62.857	ENSPMAG00000003369	-	98	40.913	Petromyzon_marinus
ENSSTOG00000007572	R3HDM1	100	90.311	ENSPCIG00000002491	R3HDM1	100	89.951	Phascolarctos_cinereus
ENSSTOG00000007572	R3HDM1	100	62.583	ENSPFOG00000015036	r3hdm1	99	47.814	Poecilia_formosa
ENSSTOG00000007572	R3HDM1	100	58.446	ENSPLAG00000018042	r3hdm1	99	46.273	Poecilia_latipinna
ENSSTOG00000007572	R3HDM1	100	58.446	ENSPMEG00000023947	r3hdm1	99	46.325	Poecilia_mexicana
ENSSTOG00000007572	R3HDM1	100	63.823	ENSPREG00000007902	r3hdm1	93	60.310	Poecilia_reticulata
ENSSTOG00000007572	R3HDM1	100	94.011	ENSPPYG00000012815	R3HDM1	100	94.011	Pongo_abelii
ENSSTOG00000007572	R3HDM1	100	86.711	ENSPCAG00000006208	R3HDM1	100	81.052	Procavia_capensis
ENSSTOG00000007572	R3HDM1	100	92.127	ENSPCOG00000012698	R3HDM1	100	93.485	Propithecus_coquereli
ENSSTOG00000007572	R3HDM1	99	91.144	ENSPVAG00000006098	R3HDM1	100	85.249	Pteropus_vampyrus
ENSSTOG00000007572	R3HDM1	100	62.876	ENSPNYG00000008701	-	97	61.005	Pundamilia_nyererei
ENSSTOG00000007572	R3HDM1	93	44.186	ENSPNAG00000004162	arpp21	57	56.800	Pygocentrus_nattereri
ENSSTOG00000007572	R3HDM1	83	76.282	ENSPNAG00000005436	R3HDM1	99	76.206	Pygocentrus_nattereri
ENSSTOG00000007572	R3HDM1	89	70.620	ENSPNAG00000013952	r3hdm1	100	63.232	Pygocentrus_nattereri
ENSSTOG00000007572	R3HDM1	99	94.096	ENSRNOG00000004099	R3hdm1	100	90.941	Rattus_norvegicus
ENSSTOG00000007572	R3HDM1	100	93.744	ENSRBIG00000033317	R3HDM1	100	97.786	Rhinopithecus_bieti
ENSSTOG00000007572	R3HDM1	100	94.374	ENSRROG00000034534	R3HDM1	100	94.374	Rhinopithecus_roxellana
ENSSTOG00000007572	R3HDM1	100	96.091	ENSSBOG00000020389	R3HDM1	100	95.005	Saimiri_boliviensis_boliviensis
ENSSTOG00000007572	R3HDM1	99	89.871	ENSSHAG00000016999	R3HDM1	100	84.615	Sarcophilus_harrisii
ENSSTOG00000007572	R3HDM1	100	71.575	ENSSFOG00015014134	r3hdm1	100	71.117	Scleropages_formosus
ENSSTOG00000007572	R3HDM1	100	67.101	ENSSFOG00015019851	-	100	56.622	Scleropages_formosus
ENSSTOG00000007572	R3HDM1	100	62.069	ENSSMAG00000001669	r3hdm1	99	45.030	Scophthalmus_maximus
ENSSTOG00000007572	R3HDM1	100	65.306	ENSSDUG00000010749	r3hdm1	99	48.279	Seriola_dumerili
ENSSTOG00000007572	R3HDM1	100	64.000	ENSSLDG00000004499	r3hdm1	99	47.694	Seriola_lalandi_dorsalis
ENSSTOG00000007572	R3HDM1	100	77.741	ENSSARG00000000352	-	69	82.392	Sorex_araneus
ENSSTOG00000007572	R3HDM1	95	86.564	ENSSPUG00000004167	R3HDM1	100	79.946	Sphenodon_punctatus
ENSSTOG00000007572	R3HDM1	100	66.212	ENSSPAG00000004648	r3hdm1	99	50.000	Stegastes_partitus
ENSSTOG00000007572	R3HDM1	100	96.502	ENSSSCG00000015692	R3HDM1	100	94.742	Sus_scrofa
ENSSTOG00000007572	R3HDM1	99	80.882	ENSTGUG00000011750	R3HDM1	100	73.532	Taeniopygia_guttata
ENSSTOG00000007572	R3HDM1	89	60.089	ENSTRUG00000011654	r3hdm1	93	47.198	Takifugu_rubripes
ENSSTOG00000007572	R3HDM1	89	65.185	ENSTNIG00000010362	r3hdm1	95	46.463	Tetraodon_nigroviridis
ENSSTOG00000007572	R3HDM1	100	87.761	ENSTTRG00000003935	R3HDM1	100	87.851	Tursiops_truncatus
ENSSTOG00000007572	R3HDM1	99	97.232	ENSUAMG00000024806	R3HDM1	100	94.536	Ursus_americanus
ENSSTOG00000007572	R3HDM1	100	90.481	ENSUMAG00000005552	R3HDM1	100	91.042	Ursus_maritimus
ENSSTOG00000007572	R3HDM1	93	92.982	ENSVPAG00000007333	R3HDM1	93	92.982	Vicugna_pacos
ENSSTOG00000007572	R3HDM1	99	96.863	ENSVVUG00000006457	R3HDM1	100	95.075	Vulpes_vulpes
ENSSTOG00000007572	R3HDM1	86	82.423	ENSXETG00000019330	r3hdm1	100	67.404	Xenopus_tropicalis
ENSSTOG00000007572	R3HDM1	83	62.233	ENSXCOG00000017448	r3hdm1	94	50.385	Xiphophorus_couchianus
ENSSTOG00000007572	R3HDM1	100	63.880	ENSXMAG00000007885	r3hdm1	99	47.712	Xiphophorus_maculatus