EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000009039 (Gene tree)
Gene ID: 101971731
Gene Symbol: LSM8
Alias: YJR022W
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 8112 bases
Position: chrJH393399.1:1105341-1113452
Accession: 101971731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000026835	LSM	PF01423.22	2.2e-19	1	1
ENSSTOP00000008092	LSM	PF01423.22	2.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000009030	LSM8-202	279	-	ENSSTOP00000008092	92 (aa)	-	I3MCT4
ENSSTOT00000039448	LSM8-201	2814	XM_005332270	ENSSTOP00000026835	96 (aa)	XP_005332327	A0A287CZR7

Gene Model

Click here to download ENSSTOG00000009039's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000009039's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000009039	LSM8	73	35.526	ENSSTOG00000028372	LSM7	73	35.526
ENSSTOG00000009039	LSM8	78	34.667	ENSSTOG00000026870	LSM1	90	34.667
ENSSTOG00000009039	LSM8	92	87.500	ENSSTOG00000034801	-	81	87.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000009039	LSM8	100	100.000	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSSTOG00000009039	LSM8	100	92.708	ENSAPOG00000008649	lsm8	100	92.708	Acanthochromis_polyacanthus
ENSSTOG00000009039	LSM8	100	100.000	ENSAMEG00000001162	LSM8	100	100.000	Ailuropoda_melanoleuca
ENSSTOG00000009039	LSM8	78	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSSTOG00000009039	LSM8	100	92.708	ENSAOCG00000013926	lsm8	100	92.708	Amphiprion_ocellaris
ENSSTOG00000009039	LSM8	100	92.708	ENSAPEG00000023502	lsm8	100	92.708	Amphiprion_percula
ENSSTOG00000009039	LSM8	78	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSSTOG00000009039	LSM8	95	91.489	ENSAPLG00000005115	LSM8	95	91.489	Anas_platyrhynchos
ENSSTOG00000009039	LSM8	100	100.000	ENSANAG00000027771	LSM8	100	100.000	Aotus_nancymaae
ENSSTOG00000009039	LSM8	100	92.708	ENSACLG00000011253	lsm8	100	92.708	Astatotilapia_calliptera
ENSSTOG00000009039	LSM8	100	94.792	ENSAMXG00000042902	lsm8	100	94.792	Astyanax_mexicanus
ENSSTOG00000009039	LSM8	100	100.000	ENSBTAG00000012649	LSM8	100	100.000	Bos_taurus
ENSSTOG00000009039	LSM8	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
ENSSTOG00000009039	LSM8	100	100.000	ENSCJAG00000046406	LSM8	100	100.000	Callithrix_jacchus
ENSSTOG00000009039	LSM8	99	100.000	ENSCAFG00000016459	LSM8	96	100.000	Canis_familiaris
ENSSTOG00000009039	LSM8	100	100.000	ENSCAFG00020007643	-	100	100.000	Canis_lupus_dingo
ENSSTOG00000009039	LSM8	89	98.824	ENSCAFG00020012800	-	66	98.824	Canis_lupus_dingo
ENSSTOG00000009039	LSM8	89	100.000	ENSCHIG00000014201	LSM8	90	100.000	Capra_hircus
ENSSTOG00000009039	LSM8	100	100.000	ENSTSYG00000032434	LSM8	100	100.000	Carlito_syrichta
ENSSTOG00000009039	LSM8	80	97.297	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
ENSSTOG00000009039	LSM8	100	100.000	ENSCPOG00000035673	LSM8	100	100.000	Cavia_porcellus
ENSSTOG00000009039	LSM8	100	100.000	ENSCCAG00000021329	LSM8	100	100.000	Cebus_capucinus
ENSSTOG00000009039	LSM8	100	100.000	ENSCATG00000045302	LSM8	100	100.000	Cercocebus_atys
ENSSTOG00000009039	LSM8	100	100.000	ENSCLAG00000003726	LSM8	100	100.000	Chinchilla_lanigera
ENSSTOG00000009039	LSM8	100	95.833	ENSCSAG00000019007	-	100	95.833	Chlorocebus_sabaeus
ENSSTOG00000009039	LSM8	100	100.000	ENSCSAG00000010802	-	100	100.000	Chlorocebus_sabaeus
ENSSTOG00000009039	LSM8	89	100.000	ENSCPBG00000008154	LSM8	87	100.000	Chrysemys_picta_bellii
ENSSTOG00000009039	LSM8	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSSTOG00000009039	LSM8	100	100.000	ENSCANG00000040728	LSM8	100	100.000	Colobus_angolensis_palliatus
ENSSTOG00000009039	LSM8	100	100.000	ENSCGRG00001000450	Lsm8	100	100.000	Cricetulus_griseus_chok1gshd
ENSSTOG00000009039	LSM8	89	100.000	ENSCGRG00000005587	Lsm8	100	100.000	Cricetulus_griseus_crigri
ENSSTOG00000009039	LSM8	100	81.250	ENSCSEG00000004164	lsm8	100	81.250	Cynoglossus_semilaevis
ENSSTOG00000009039	LSM8	100	91.667	ENSCVAG00000020547	lsm8	100	91.667	Cyprinodon_variegatus
ENSSTOG00000009039	LSM8	100	91.667	ENSDARG00000091656	lsm8	100	91.667	Danio_rerio
ENSSTOG00000009039	LSM8	100	100.000	ENSDNOG00000034613	LSM8	100	100.000	Dasypus_novemcinctus
ENSSTOG00000009039	LSM8	100	100.000	ENSDORG00000027868	Lsm8	100	100.000	Dipodomys_ordii
ENSSTOG00000009039	LSM8	98	69.149	FBgn0035271	CG2021	99	69.149	Drosophila_melanogaster
ENSSTOG00000009039	LSM8	100	98.958	ENSETEG00000011594	LSM8	100	98.958	Echinops_telfairi
ENSSTOG00000009039	LSM8	80	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSSTOG00000009039	LSM8	100	100.000	ENSEASG00005008932	LSM8	62	100.000	Equus_asinus_asinus
ENSSTOG00000009039	LSM8	89	100.000	ENSECAG00000024025	LSM8	77	100.000	Equus_caballus
ENSSTOG00000009039	LSM8	100	91.667	ENSELUG00000010138	lsm8	100	91.667	Esox_lucius
ENSSTOG00000009039	LSM8	100	100.000	ENSFCAG00000036620	-	100	100.000	Felis_catus
ENSSTOG00000009039	LSM8	85	74.390	ENSFCAG00000044794	-	83	74.390	Felis_catus
ENSSTOG00000009039	LSM8	100	98.958	ENSFALG00000010023	LSM8	100	98.958	Ficedula_albicollis
ENSSTOG00000009039	LSM8	100	100.000	ENSFDAG00000019530	LSM8	100	100.000	Fukomys_damarensis
ENSSTOG00000009039	LSM8	100	92.708	ENSFHEG00000013729	lsm8	100	92.708	Fundulus_heteroclitus
ENSSTOG00000009039	LSM8	100	98.958	ENSGALG00000009110	LSM8	100	98.958	Gallus_gallus
ENSSTOG00000009039	LSM8	100	91.667	ENSGAFG00000001135	lsm8	100	91.667	Gambusia_affinis
ENSSTOG00000009039	LSM8	100	100.000	ENSGAGG00000017366	LSM8	100	100.000	Gopherus_agassizii
ENSSTOG00000009039	LSM8	100	100.000	ENSGGOG00000041883	LSM8	100	100.000	Gorilla_gorilla
ENSSTOG00000009039	LSM8	100	92.708	ENSHBUG00000003646	lsm8	100	92.708	Haplochromis_burtoni
ENSSTOG00000009039	LSM8	100	93.750	ENSHGLG00000019782	-	100	93.750	Heterocephalus_glaber_female
ENSSTOG00000009039	LSM8	71	100.000	ENSHGLG00000001988	-	99	100.000	Heterocephalus_glaber_female
ENSSTOG00000009039	LSM8	99	96.842	ENSHGLG00100003934	-	95	96.842	Heterocephalus_glaber_male
ENSSTOG00000009039	LSM8	100	95.833	ENSHGLG00100012166	-	100	95.833	Heterocephalus_glaber_male
ENSSTOG00000009039	LSM8	100	91.667	ENSHCOG00000005037	lsm8	100	91.667	Hippocampus_comes
ENSSTOG00000009039	LSM8	100	94.792	ENSIPUG00000019811	NAA38	100	94.792	Ictalurus_punctatus
ENSSTOG00000009039	LSM8	100	100.000	ENSJJAG00000009031	Lsm8	99	100.000	Jaculus_jaculus
ENSSTOG00000009039	LSM8	100	92.708	ENSKMAG00000018983	lsm8	100	92.708	Kryptolebias_marmoratus
ENSSTOG00000009039	LSM8	100	94.792	ENSLACG00000010231	LSM8	100	94.792	Latimeria_chalumnae
ENSSTOG00000009039	LSM8	100	93.750	ENSLOCG00000015580	lsm8	100	93.750	Lepisosteus_oculatus
ENSSTOG00000009039	LSM8	100	98.969	ENSLAFG00000011242	LSM8	100	98.969	Loxodonta_africana
ENSSTOG00000009039	LSM8	100	100.000	ENSMFAG00000035798	LSM8	100	100.000	Macaca_fascicularis
ENSSTOG00000009039	LSM8	100	95.833	ENSMFAG00000013044	-	100	95.833	Macaca_fascicularis
ENSSTOG00000009039	LSM8	100	100.000	ENSMMUG00000046401	LSM8	100	97.297	Macaca_mulatta
ENSSTOG00000009039	LSM8	100	100.000	ENSMNEG00000036764	-	100	100.000	Macaca_nemestrina
ENSSTOG00000009039	LSM8	78	96.000	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
ENSSTOG00000009039	LSM8	100	84.375	ENSMLEG00000039324	-	100	84.375	Mandrillus_leucophaeus
ENSSTOG00000009039	LSM8	100	100.000	ENSMLEG00000035828	-	100	100.000	Mandrillus_leucophaeus
ENSSTOG00000009039	LSM8	78	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSSTOG00000009039	LSM8	100	92.708	ENSMZEG00005019138	lsm8	100	92.708	Maylandia_zebra
ENSSTOG00000009039	LSM8	100	98.958	ENSMGAG00000008808	LSM8	100	98.958	Meleagris_gallopavo
ENSSTOG00000009039	LSM8	100	92.708	ENSMAUG00000015721	-	100	92.708	Mesocricetus_auratus
ENSSTOG00000009039	LSM8	97	79.775	ENSMAUG00000020287	-	100	90.541	Mesocricetus_auratus
ENSSTOG00000009039	LSM8	100	80.208	ENSMAUG00000015356	-	100	80.208	Mesocricetus_auratus
ENSSTOG00000009039	LSM8	100	100.000	ENSMICG00000042730	LSM8	100	100.000	Microcebus_murinus
ENSSTOG00000009039	LSM8	100	100.000	ENSMOCG00000001688	Lsm8	100	100.000	Microtus_ochrogaster
ENSSTOG00000009039	LSM8	78	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSSTOG00000009039	LSM8	68	95.238	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSSTOG00000009039	LSM8	100	93.750	ENSMALG00000000405	lsm8	100	93.750	Monopterus_albus
ENSSTOG00000009039	LSM8	100	100.000	MGP_CAROLIEiJ_G0028125	-	100	100.000	Mus_caroli
ENSSTOG00000009039	LSM8	100	100.000	ENSMUSG00000044155	Lsm8	100	100.000	Mus_musculus
ENSSTOG00000009039	LSM8	100	100.000	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
ENSSTOG00000009039	LSM8	100	100.000	MGP_SPRETEiJ_G0029125	-	100	100.000	Mus_spretus
ENSSTOG00000009039	LSM8	100	98.958	ENSMLUG00000027762	-	100	98.958	Myotis_lucifugus
ENSSTOG00000009039	LSM8	100	100.000	ENSMLUG00000006837	-	100	100.000	Myotis_lucifugus
ENSSTOG00000009039	LSM8	100	100.000	ENSNGAG00000016554	Lsm8	100	100.000	Nannospalax_galili
ENSSTOG00000009039	LSM8	100	92.708	ENSNBRG00000014441	lsm8	100	92.708	Neolamprologus_brichardi
ENSSTOG00000009039	LSM8	100	100.000	ENSNLEG00000011768	LSM8	100	100.000	Nomascus_leucogenys
ENSSTOG00000009039	LSM8	100	88.542	ENSMEUG00000007801	LSM8	100	88.542	Notamacropus_eugenii
ENSSTOG00000009039	LSM8	89	100.000	ENSOPRG00000014809	LSM8	100	100.000	Ochotona_princeps
ENSSTOG00000009039	LSM8	100	100.000	ENSODEG00000000418	-	100	100.000	Octodon_degus
ENSSTOG00000009039	LSM8	90	82.558	ENSODEG00000020290	-	100	82.558	Octodon_degus
ENSSTOG00000009039	LSM8	100	98.958	ENSOANG00000014536	LSM8	100	98.958	Ornithorhynchus_anatinus
ENSSTOG00000009039	LSM8	100	98.969	ENSOCUG00000017359	LSM8	100	98.969	Oryctolagus_cuniculus
ENSSTOG00000009039	LSM8	100	82.292	ENSORLG00000017432	lsm8	100	82.292	Oryzias_latipes
ENSSTOG00000009039	LSM8	100	82.292	ENSORLG00020004376	lsm8	100	82.292	Oryzias_latipes_hni
ENSSTOG00000009039	LSM8	100	92.708	ENSORLG00015003757	lsm8	100	92.708	Oryzias_latipes_hsok
ENSSTOG00000009039	LSM8	100	80.208	ENSOMEG00000022509	lsm8	100	81.250	Oryzias_melastigma
ENSSTOG00000009039	LSM8	100	100.000	ENSOGAG00000013377	LSM8	100	100.000	Otolemur_garnettii
ENSSTOG00000009039	LSM8	100	100.000	ENSOARG00000017974	LSM8	100	100.000	Ovis_aries
ENSSTOG00000009039	LSM8	78	100.000	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
ENSSTOG00000009039	LSM8	100	100.000	ENSPPRG00000006444	LSM8	100	100.000	Panthera_pardus
ENSSTOG00000009039	LSM8	100	100.000	ENSPTIG00000004722	LSM8	100	100.000	Panthera_tigris_altaica
ENSSTOG00000009039	LSM8	78	100.000	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
ENSSTOG00000009039	LSM8	100	93.750	ENSPANG00000019395	-	100	93.750	Papio_anubis
ENSSTOG00000009039	LSM8	100	100.000	ENSPANG00000035470	-	100	100.000	Papio_anubis
ENSSTOG00000009039	LSM8	89	97.647	ENSPKIG00000006092	lsm8	86	97.647	Paramormyrops_kingsleyae
ENSSTOG00000009039	LSM8	78	100.000	ENSPSIG00000017054	LSM8	100	100.000	Pelodiscus_sinensis
ENSSTOG00000009039	LSM8	78	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSSTOG00000009039	LSM8	80	98.649	ENSPEMG00000009153	Lsm8	100	98.649	Peromyscus_maniculatus_bairdii
ENSSTOG00000009039	LSM8	97	100.000	ENSPCIG00000021467	LSM8	98	100.000	Phascolarctos_cinereus
ENSSTOG00000009039	LSM8	100	91.667	ENSPFOG00000012340	lsm8	100	91.667	Poecilia_formosa
ENSSTOG00000009039	LSM8	89	94.118	ENSPLAG00000000516	lsm8	89	94.118	Poecilia_latipinna
ENSSTOG00000009039	LSM8	100	91.667	ENSPMEG00000022567	lsm8	100	91.667	Poecilia_mexicana
ENSSTOG00000009039	LSM8	85	82.353	ENSPREG00000005527	lsm8	75	82.353	Poecilia_reticulata
ENSSTOG00000009039	LSM8	100	100.000	ENSPPYG00000017942	LSM8	100	100.000	Pongo_abelii
ENSSTOG00000009039	LSM8	99	77.895	ENSPCOG00000017982	-	99	77.895	Propithecus_coquereli
ENSSTOG00000009039	LSM8	100	100.000	ENSPCOG00000003309	-	100	100.000	Propithecus_coquereli
ENSSTOG00000009039	LSM8	89	98.824	ENSPVAG00000000990	LSM8	100	98.824	Pteropus_vampyrus
ENSSTOG00000009039	LSM8	100	92.708	ENSPNYG00000011448	lsm8	100	92.708	Pundamilia_nyererei
ENSSTOG00000009039	LSM8	100	94.792	ENSPNAG00000010252	lsm8	100	94.792	Pygocentrus_nattereri
ENSSTOG00000009039	LSM8	100	100.000	ENSRNOG00000058677	Lsm8	100	100.000	Rattus_norvegicus
ENSSTOG00000009039	LSM8	100	100.000	ENSRBIG00000032851	LSM8	100	100.000	Rhinopithecus_bieti
ENSSTOG00000009039	LSM8	100	100.000	ENSRROG00000039618	LSM8	100	100.000	Rhinopithecus_roxellana
ENSSTOG00000009039	LSM8	100	100.000	ENSSBOG00000023223	LSM8	100	100.000	Saimiri_boliviensis_boliviensis
ENSSTOG00000009039	LSM8	100	100.000	ENSSHAG00000018435	-	100	100.000	Sarcophilus_harrisii
ENSSTOG00000009039	LSM8	100	91.667	ENSSFOG00015004412	lsm8	100	91.667	Scleropages_formosus
ENSSTOG00000009039	LSM8	78	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSSTOG00000009039	LSM8	100	92.708	ENSSDUG00000014702	lsm8	100	92.708	Seriola_dumerili
ENSSTOG00000009039	LSM8	78	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSSTOG00000009039	LSM8	78	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
ENSSTOG00000009039	LSM8	100	100.000	ENSSPUG00000017419	LSM8	100	100.000	Sphenodon_punctatus
ENSSTOG00000009039	LSM8	100	92.708	ENSSPAG00000021422	lsm8	100	92.708	Stegastes_partitus
ENSSTOG00000009039	LSM8	100	100.000	ENSSSCG00000021652	LSM8	100	100.000	Sus_scrofa
ENSSTOG00000009039	LSM8	100	96.875	ENSTGUG00000016823	-	100	96.875	Taeniopygia_guttata
ENSSTOG00000009039	LSM8	100	97.917	ENSTGUG00000004730	-	100	97.917	Taeniopygia_guttata
ENSSTOG00000009039	LSM8	100	92.708	ENSTRUG00000025192	lsm8	100	92.708	Takifugu_rubripes
ENSSTOG00000009039	LSM8	100	92.708	ENSTNIG00000002864	lsm8	100	92.708	Tetraodon_nigroviridis
ENSSTOG00000009039	LSM8	100	100.000	ENSTTRG00000001023	LSM8	100	100.000	Tursiops_truncatus
ENSSTOG00000009039	LSM8	92	96.591	ENSUAMG00000006943	-	92	96.591	Ursus_americanus
ENSSTOG00000009039	LSM8	92	96.591	ENSUMAG00000003073	LSM8	94	96.591	Ursus_maritimus
ENSSTOG00000009039	LSM8	100	100.000	ENSVPAG00000001530	LSM8	100	100.000	Vicugna_pacos
ENSSTOG00000009039	LSM8	78	97.333	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
ENSSTOG00000009039	LSM8	93	96.629	ENSXETG00000021829	lsm8	92	96.629	Xenopus_tropicalis
ENSSTOG00000009039	LSM8	100	89.583	ENSXCOG00000012938	lsm8	100	89.583	Xiphophorus_couchianus
ENSSTOG00000009039	LSM8	100	91.667	ENSXMAG00000025919	lsm8	100	91.667	Xiphophorus_maculatus