EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000009196 (Gene tree)
Gene ID: 101958125
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 37573 bases
Position: chrJH393406.1:2468116-2505688
Accession: 101958125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000030800	UPF1_Zn_bind	PF09416.10	6.1e-75	1	1
ENSSTOP00000008277	UPF1_Zn_bind	PF09416.10	6.1e-75	1	1
ENSSTOP00000030217	UPF1_Zn_bind	PF09416.10	6.3e-75	1	1
ENSSTOP00000030800	ResIII	PF04851.15	2.2e-05	1	1
ENSSTOP00000008277	ResIII	PF04851.15	2.2e-05	1	1
ENSSTOP00000030217	ResIII	PF04851.15	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000037140	UPF1-201	6717	-	ENSSTOP00000030217	1152 (aa)	-	A0A287D9H5
ENSSTOT00000009227	UPF1-203	3375	XM_005332977	ENSSTOP00000008277	1124 (aa)	XP_005333034	I3MD65
ENSSTOT00000031320	UPF1-202	6615	XM_005332978	ENSSTOP00000030800	1118 (aa)	XP_005333035	A0A287DB62

Gene Model

Click here to download ENSSTOG00000009196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000009196's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000009196	UPF1	100	99.642	ENSG00000005007	UPF1	100	99.642	Homo_sapiens
ENSSTOG00000009196	UPF1	100	92.507	ENSAPOG00000010916	-	100	92.507	Acanthochromis_polyacanthus
ENSSTOG00000009196	UPF1	100	91.192	ENSAPOG00000023773	upf1	100	91.281	Acanthochromis_polyacanthus
ENSSTOG00000009196	UPF1	100	98.316	ENSAMEG00000011474	UPF1	100	98.316	Ailuropoda_melanoleuca
ENSSTOG00000009196	UPF1	100	90.933	ENSACIG00000019949	upf1	100	91.370	Amphilophus_citrinellus
ENSSTOG00000009196	UPF1	92	94.829	ENSACIG00000010985	-	100	94.927	Amphilophus_citrinellus
ENSSTOG00000009196	UPF1	100	92.596	ENSAOCG00000006352	-	100	92.596	Amphiprion_ocellaris
ENSSTOG00000009196	UPF1	100	90.706	ENSAOCG00000018519	upf1	100	91.189	Amphiprion_ocellaris
ENSSTOG00000009196	UPF1	100	90.706	ENSAPEG00000016344	upf1	100	91.189	Amphiprion_percula
ENSSTOG00000009196	UPF1	100	92.596	ENSAPEG00000006292	-	100	92.596	Amphiprion_percula
ENSSTOG00000009196	UPF1	100	92.596	ENSATEG00000016606	-	100	92.596	Anabas_testudineus
ENSSTOG00000009196	UPF1	100	89.886	ENSATEG00000017867	upf1	100	90.589	Anabas_testudineus
ENSSTOG00000009196	UPF1	94	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSSTOG00000009196	UPF1	96	96.488	ENSANAG00000024107	UPF1	98	96.488	Aotus_nancymaae
ENSSTOG00000009196	UPF1	100	90.667	ENSACLG00000007181	upf1	100	91.103	Astatotilapia_calliptera
ENSSTOG00000009196	UPF1	100	92.328	ENSACLG00000022630	-	100	92.239	Astatotilapia_calliptera
ENSSTOG00000009196	UPF1	100	92.959	ENSAMXG00000042187	upf1	100	93.405	Astyanax_mexicanus
ENSSTOG00000009196	UPF1	100	99.113	ENSBTAG00000020922	UPF1	100	99.113	Bos_taurus
ENSSTOG00000009196	UPF1	89	50.639	WBGene00004880	smg-2	99	48.029	Caenorhabditis_elegans
ENSSTOG00000009196	UPF1	100	99.203	ENSCJAG00000019627	UPF1	100	99.203	Callithrix_jacchus
ENSSTOG00000009196	UPF1	100	99.027	ENSCAFG00000014578	UPF1	100	99.027	Canis_familiaris
ENSSTOG00000009196	UPF1	100	99.464	ENSCAFG00020012347	UPF1	100	99.464	Canis_lupus_dingo
ENSSTOG00000009196	UPF1	100	99.017	ENSCHIG00000011018	UPF1	100	99.017	Capra_hircus
ENSSTOG00000009196	UPF1	96	98.141	ENSTSYG00000008877	UPF1	99	98.141	Carlito_syrichta
ENSSTOG00000009196	UPF1	94	98.764	ENSCAPG00000005758	UPF1	95	98.764	Cavia_aperea
ENSSTOG00000009196	UPF1	100	96.892	ENSCPOG00000025463	UPF1	100	96.892	Cavia_porcellus
ENSSTOG00000009196	UPF1	100	99.642	ENSCCAG00000032175	UPF1	100	99.642	Cebus_capucinus
ENSSTOG00000009196	UPF1	95	98.037	ENSCATG00000040306	UPF1	98	98.037	Cercocebus_atys
ENSSTOG00000009196	UPF1	96	98.611	ENSCLAG00000004037	UPF1	100	99.810	Chinchilla_lanigera
ENSSTOG00000009196	UPF1	100	99.553	ENSCSAG00000005276	UPF1	100	99.553	Chlorocebus_sabaeus
ENSSTOG00000009196	UPF1	100	96.619	ENSCPBG00000012513	UPF1	100	96.619	Chrysemys_picta_bellii
ENSSTOG00000009196	UPF1	78	78.007	ENSCING00000021399	-	99	78.236	Ciona_intestinalis
ENSSTOG00000009196	UPF1	99	71.972	ENSCSAVG00000006533	-	99	71.972	Ciona_savignyi
ENSSTOG00000009196	UPF1	95	98.879	ENSCANG00000029819	UPF1	99	98.879	Colobus_angolensis_palliatus
ENSSTOG00000009196	UPF1	100	98.569	ENSCGRG00001021067	Upf1	100	98.569	Cricetulus_griseus_chok1gshd
ENSSTOG00000009196	UPF1	95	98.129	ENSCGRG00000013480	Upf1	99	98.129	Cricetulus_griseus_crigri
ENSSTOG00000009196	UPF1	100	92.500	ENSCSEG00000016159	-	100	92.411	Cynoglossus_semilaevis
ENSSTOG00000009196	UPF1	100	86.262	ENSCSEG00000017239	upf1	100	86.351	Cynoglossus_semilaevis
ENSSTOG00000009196	UPF1	100	92.328	ENSCVAG00000010561	upf1	100	92.239	Cyprinodon_variegatus
ENSSTOG00000009196	UPF1	100	92.781	ENSDARG00000016302	upf1	100	93.226	Danio_rerio
ENSSTOG00000009196	UPF1	95	95.884	ENSDORG00000009984	Upf1	96	95.884	Dipodomys_ordii
ENSSTOG00000009196	UPF1	85	70.941	FBgn0030354	Upf1	84	67.720	Drosophila_melanogaster
ENSSTOG00000009196	UPF1	55	85.575	ENSEBUG00000010069	upf1	96	85.413	Eptatretus_burgeri
ENSSTOG00000009196	UPF1	100	99.017	ENSEASG00005006549	UPF1	100	99.017	Equus_asinus_asinus
ENSSTOG00000009196	UPF1	100	99.017	ENSECAG00000010639	UPF1	100	99.017	Equus_caballus
ENSSTOG00000009196	UPF1	100	91.046	ENSELUG00000012916	-	100	91.585	Esox_lucius
ENSSTOG00000009196	UPF1	100	90.240	ENSELUG00000020917	upf1	100	90.506	Esox_lucius
ENSSTOG00000009196	UPF1	100	98.938	ENSFCAG00000009757	UPF1	100	98.938	Felis_catus
ENSSTOG00000009196	UPF1	96	96.756	ENSFALG00000009312	UPF1	99	96.756	Ficedula_albicollis
ENSSTOG00000009196	UPF1	97	97.610	ENSFDAG00000014816	UPF1	100	99.715	Fukomys_damarensis
ENSSTOG00000009196	UPF1	85	95.477	ENSFHEG00000016276	-	96	95.489	Fundulus_heteroclitus
ENSSTOG00000009196	UPF1	100	88.319	ENSFHEG00000006428	upf1	100	88.319	Fundulus_heteroclitus
ENSSTOG00000009196	UPF1	100	91.304	ENSGMOG00000007541	upf1	100	92.103	Gadus_morhua
ENSSTOG00000009196	UPF1	100	97.676	ENSGALG00000003220	UPF1	100	97.676	Gallus_gallus
ENSSTOG00000009196	UPF1	62	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSSTOG00000009196	UPF1	100	91.786	ENSGAFG00000004831	upf1	100	92.143	Gambusia_affinis
ENSSTOG00000009196	UPF1	100	96.964	ENSGAGG00000022217	UPF1	100	96.964	Gopherus_agassizii
ENSSTOG00000009196	UPF1	93	99.616	ENSGGOG00000002608	UPF1	99	99.616	Gorilla_gorilla
ENSSTOG00000009196	UPF1	88	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSTOG00000009196	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSSTOG00000009196	UPF1	100	98.849	ENSHGLG00000010900	UPF1	100	98.849	Heterocephalus_glaber_female
ENSSTOG00000009196	UPF1	95	96.030	ENSHGLG00100005904	UPF1	99	96.030	Heterocephalus_glaber_male
ENSSTOG00000009196	UPF1	100	91.518	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSSTOG00000009196	UPF1	100	93.405	ENSIPUG00000005108	UPF1	100	93.761	Ictalurus_punctatus
ENSSTOG00000009196	UPF1	100	98.665	ENSJJAG00000023151	Upf1	100	98.665	Jaculus_jaculus
ENSSTOG00000009196	UPF1	100	92.685	ENSKMAG00000004962	upf1	100	92.596	Kryptolebias_marmoratus
ENSSTOG00000009196	UPF1	100	89.339	ENSLBEG00000014862	upf1	100	90.396	Labrus_bergylta
ENSSTOG00000009196	UPF1	100	92.246	ENSLBEG00000027848	-	100	92.246	Labrus_bergylta
ENSSTOG00000009196	UPF1	62	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSSTOG00000009196	UPF1	100	95.000	ENSLOCG00000002072	upf1	100	95.000	Lepisosteus_oculatus
ENSSTOG00000009196	UPF1	100	98.316	ENSLAFG00000014963	UPF1	100	98.316	Loxodonta_africana
ENSSTOG00000009196	UPF1	100	99.377	ENSMFAG00000037748	UPF1	100	99.377	Macaca_fascicularis
ENSSTOG00000009196	UPF1	100	99.555	ENSMMUG00000023286	UPF1	100	99.555	Macaca_mulatta
ENSSTOG00000009196	UPF1	100	99.377	ENSMNEG00000000046	UPF1	100	99.377	Macaca_nemestrina
ENSSTOG00000009196	UPF1	94	99.620	ENSMLEG00000028404	UPF1	100	99.620	Mandrillus_leucophaeus
ENSSTOG00000009196	UPF1	100	91.533	ENSMAMG00000006231	-	100	91.979	Mastacembelus_armatus
ENSSTOG00000009196	UPF1	100	89.622	ENSMAMG00000006229	upf1	100	90.501	Mastacembelus_armatus
ENSSTOG00000009196	UPF1	100	92.328	ENSMZEG00005016386	-	100	92.239	Maylandia_zebra
ENSSTOG00000009196	UPF1	100	89.719	ENSMZEG00005003489	upf1	100	90.813	Maylandia_zebra
ENSSTOG00000009196	UPF1	94	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSSTOG00000009196	UPF1	95	97.403	ENSMAUG00000011398	Upf1	97	97.403	Mesocricetus_auratus
ENSSTOG00000009196	UPF1	100	99.374	ENSMICG00000001659	UPF1	100	99.374	Microcebus_murinus
ENSSTOG00000009196	UPF1	100	98.843	ENSMOCG00000005699	Upf1	100	98.843	Microtus_ochrogaster
ENSSTOG00000009196	UPF1	94	91.548	ENSMMOG00000007537	-	99	92.610	Mola_mola
ENSSTOG00000009196	UPF1	100	90.527	ENSMMOG00000007881	upf1	100	90.893	Mola_mola
ENSSTOG00000009196	UPF1	100	97.617	ENSMODG00000003689	UPF1	100	97.617	Monodelphis_domestica
ENSSTOG00000009196	UPF1	100	91.297	ENSMALG00000018100	-	100	91.297	Monopterus_albus
ENSSTOG00000009196	UPF1	100	90.706	ENSMALG00000000144	upf1	100	90.885	Monopterus_albus
ENSSTOG00000009196	UPF1	100	98.843	MGP_CAROLIEiJ_G0031142	Upf1	100	98.843	Mus_caroli
ENSSTOG00000009196	UPF1	100	98.843	ENSMUSG00000058301	Upf1	100	98.843	Mus_musculus
ENSSTOG00000009196	UPF1	100	98.843	MGP_PahariEiJ_G0021607	Upf1	100	98.843	Mus_pahari
ENSSTOG00000009196	UPF1	100	98.843	MGP_SPRETEiJ_G0032260	Upf1	100	98.843	Mus_spretus
ENSSTOG00000009196	UPF1	100	99.464	ENSMPUG00000015516	UPF1	100	99.464	Mustela_putorius_furo
ENSSTOG00000009196	UPF1	99	99.013	ENSMLUG00000012122	UPF1	99	99.013	Myotis_lucifugus
ENSSTOG00000009196	UPF1	100	98.580	ENSNGAG00000024107	Upf1	100	98.580	Nannospalax_galili
ENSSTOG00000009196	UPF1	100	89.715	ENSNBRG00000022069	-	100	93.878	Neolamprologus_brichardi
ENSSTOG00000009196	UPF1	100	88.978	ENSNBRG00000000670	upf1	100	89.413	Neolamprologus_brichardi
ENSSTOG00000009196	UPF1	94	93.821	ENSNLEG00000006062	UPF1	100	93.821	Nomascus_leucogenys
ENSSTOG00000009196	UPF1	83	93.922	ENSMEUG00000014146	-	83	93.922	Notamacropus_eugenii
ENSSTOG00000009196	UPF1	94	90.399	ENSOPRG00000014018	UPF1	100	91.354	Ochotona_princeps
ENSSTOG00000009196	UPF1	100	98.310	ENSODEG00000012426	UPF1	100	98.310	Octodon_degus
ENSSTOG00000009196	UPF1	100	89.982	ENSONIG00000010452	upf1	100	91.078	Oreochromis_niloticus
ENSSTOG00000009196	UPF1	100	92.417	ENSONIG00000012729	-	100	92.328	Oreochromis_niloticus
ENSSTOG00000009196	UPF1	100	97.695	ENSOANG00000004568	UPF1	100	97.695	Ornithorhynchus_anatinus
ENSSTOG00000009196	UPF1	100	92.417	ENSORLG00000008453	upf1	100	92.417	Oryzias_latipes
ENSSTOG00000009196	UPF1	100	92.246	ENSORLG00020014758	upf1	100	92.246	Oryzias_latipes_hni
ENSSTOG00000009196	UPF1	100	92.246	ENSORLG00015010165	upf1	98	96.960	Oryzias_latipes_hsok
ENSSTOG00000009196	UPF1	100	92.417	ENSOMEG00000003665	upf1	100	92.328	Oryzias_melastigma
ENSSTOG00000009196	UPF1	100	99.732	ENSOGAG00000012866	UPF1	100	99.732	Otolemur_garnettii
ENSSTOG00000009196	UPF1	96	97.053	ENSOARG00000010739	UPF1	100	97.053	Ovis_aries
ENSSTOG00000009196	UPF1	96	98.327	ENSPPAG00000043884	UPF1	97	98.327	Pan_paniscus
ENSSTOG00000009196	UPF1	100	98.938	ENSPPRG00000023470	UPF1	100	98.938	Panthera_pardus
ENSSTOG00000009196	UPF1	93	97.404	ENSPTIG00000010159	UPF1	99	97.404	Panthera_tigris_altaica
ENSSTOG00000009196	UPF1	100	99.377	ENSPTRG00000010721	UPF1	100	99.377	Pan_troglodytes
ENSSTOG00000009196	UPF1	100	99.377	ENSPANG00000008847	UPF1	100	99.377	Papio_anubis
ENSSTOG00000009196	UPF1	94	92.344	ENSPKIG00000006069	upf1	99	92.250	Paramormyrops_kingsleyae
ENSSTOG00000009196	UPF1	68	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSSTOG00000009196	UPF1	100	89.146	ENSPMGG00000017327	upf1	100	89.254	Periophthalmus_magnuspinnatus
ENSSTOG00000009196	UPF1	100	99.021	ENSPEMG00000001085	Upf1	100	99.021	Peromyscus_maniculatus_bairdii
ENSSTOG00000009196	UPF1	100	87.111	ENSPMAG00000001206	upf1	100	86.549	Petromyzon_marinus
ENSSTOG00000009196	UPF1	100	98.481	ENSPCIG00000006156	UPF1	100	98.481	Phascolarctos_cinereus
ENSSTOG00000009196	UPF1	100	91.875	ENSPLAG00000016232	-	100	92.232	Poecilia_latipinna
ENSSTOG00000009196	UPF1	100	89.469	ENSPLAG00000018155	-	100	89.381	Poecilia_latipinna
ENSSTOG00000009196	UPF1	100	91.793	ENSPMEG00000016319	-	100	92.150	Poecilia_mexicana
ENSSTOG00000009196	UPF1	100	89.840	ENSPMEG00000011443	-	100	89.750	Poecilia_mexicana
ENSSTOG00000009196	UPF1	100	91.696	ENSPREG00000011247	-	100	92.054	Poecilia_reticulata
ENSSTOG00000009196	UPF1	100	89.823	ENSPREG00000009940	upf1	100	89.912	Poecilia_reticulata
ENSSTOG00000009196	UPF1	100	94.243	ENSPPYG00000009752	UPF1	100	94.243	Pongo_abelii
ENSSTOG00000009196	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSSTOG00000009196	UPF1	100	99.199	ENSPCOG00000023813	UPF1	100	99.199	Propithecus_coquereli
ENSSTOG00000009196	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSTOG00000009196	UPF1	100	92.328	ENSPNYG00000016731	-	100	92.239	Pundamilia_nyererei
ENSSTOG00000009196	UPF1	100	89.719	ENSPNYG00000003694	upf1	100	90.813	Pundamilia_nyererei
ENSSTOG00000009196	UPF1	100	92.959	ENSPNAG00000025614	upf1	100	93.405	Pygocentrus_nattereri
ENSSTOG00000009196	UPF1	100	98.932	ENSRNOG00000020134	Upf1	100	98.932	Rattus_norvegicus
ENSSTOG00000009196	UPF1	95	96.542	ENSRBIG00000013894	UPF1	98	99.343	Rhinopithecus_bieti
ENSSTOG00000009196	UPF1	95	98.879	ENSRROG00000040935	UPF1	99	98.879	Rhinopithecus_roxellana
ENSSTOG00000009196	UPF1	76	55.309	YMR080C	NAM7	86	55.962	Saccharomyces_cerevisiae
ENSSTOG00000009196	UPF1	96	97.868	ENSSBOG00000023632	UPF1	99	97.868	Saimiri_boliviensis_boliviensis
ENSSTOG00000009196	UPF1	94	98.670	ENSSHAG00000010499	UPF1	100	98.670	Sarcophilus_harrisii
ENSSTOG00000009196	UPF1	100	94.826	ENSSFOG00015021095	upf1	99	97.214	Scleropages_formosus
ENSSTOG00000009196	UPF1	100	88.987	ENSSMAG00000005055	upf1	100	89.701	Scophthalmus_maximus
ENSSTOG00000009196	UPF1	100	92.424	ENSSMAG00000021018	-	100	92.424	Scophthalmus_maximus
ENSSTOG00000009196	UPF1	100	92.602	ENSSDUG00000009629	-	100	92.602	Seriola_dumerili
ENSSTOG00000009196	UPF1	100	89.886	ENSSDUG00000013320	upf1	100	90.765	Seriola_dumerili
ENSSTOG00000009196	UPF1	100	92.602	ENSSLDG00000006878	-	100	92.602	Seriola_lalandi_dorsalis
ENSSTOG00000009196	UPF1	100	90.683	ENSSLDG00000020868	upf1	100	91.054	Seriola_lalandi_dorsalis
ENSSTOG00000009196	UPF1	100	97.051	ENSSPUG00000010538	UPF1	100	97.051	Sphenodon_punctatus
ENSSTOG00000009196	UPF1	100	89.107	ENSSPAG00000000003	upf1	100	89.047	Stegastes_partitus
ENSSTOG00000009196	UPF1	100	92.589	ENSSPAG00000011521	-	100	92.500	Stegastes_partitus
ENSSTOG00000009196	UPF1	100	99.024	ENSSSCG00000039301	UPF1	100	99.024	Sus_scrofa
ENSSTOG00000009196	UPF1	83	90.000	ENSTGUG00000001057	UPF1	100	95.421	Taeniopygia_guttata
ENSSTOG00000009196	UPF1	100	91.429	ENSTRUG00000005131	-	100	91.429	Takifugu_rubripes
ENSSTOG00000009196	UPF1	100	90.285	ENSTRUG00000000150	upf1	100	90.285	Takifugu_rubripes
ENSSTOG00000009196	UPF1	100	95.174	ENSTTRG00000011544	UPF1	100	94.549	Tursiops_truncatus
ENSSTOG00000009196	UPF1	100	99.374	ENSUAMG00000007093	UPF1	100	99.374	Ursus_americanus
ENSSTOG00000009196	UPF1	96	98.138	ENSUMAG00000006652	UPF1	99	99.689	Ursus_maritimus
ENSSTOG00000009196	UPF1	100	99.464	ENSVVUG00000007797	UPF1	100	99.464	Vulpes_vulpes
ENSSTOG00000009196	UPF1	100	82.203	ENSXETG00000013602	upf1	100	82.115	Xenopus_tropicalis
ENSSTOG00000009196	UPF1	93	93.378	ENSXCOG00000005764	-	100	94.859	Xiphophorus_couchianus
ENSSTOG00000009196	UPF1	97	89.658	ENSXCOG00000015275	-	96	89.566	Xiphophorus_couchianus
ENSSTOG00000009196	UPF1	100	89.911	ENSXMAG00000001703	-	100	89.821	Xiphophorus_maculatus
ENSSTOG00000009196	UPF1	100	91.615	ENSXMAG00000002540	-	100	91.971	Xiphophorus_maculatus