EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000009790 (Gene tree)
Gene ID: 101954758
Gene Symbol: -
Alias: -
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 13059 bases
Position: chrJH393409.1:4533795-4546853
Accession: 101954758
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000008782	KH_1	PF00013.29	2.4e-07	1	1
ENSSTOP00000031783	KH_1	PF00013.29	2.4e-07	1	1
ENSSTOP00000031783	zf-CCHC	PF00098.23	0.00016	1	1
ENSSTOP00000008782	zf-CCHC	PF00098.23	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000009794	-	3094	XM_005333475	ENSSTOP00000008782	628 (aa)	XP_005333533	I3ME85
ENSSTOT00000036196	-	2660	XM_005333479	ENSSTOP00000031783	627 (aa)	XP_005333536	A0A287DE08

Gene Model

Click here to download ENSSTOG00000009790's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000009790's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000009790	-	74	96.667	ENSSTOG00000024353	-	83	96.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000009790	-	58	82.086	ENSAPOG00000012341	sf1	58	76.923	Acanthochromis_polyacanthus
ENSSTOG00000009790	-	100	91.406	ENSAMEG00000017828	SF1	90	94.710	Ailuropoda_melanoleuca
ENSSTOG00000009790	-	58	83.651	ENSACIG00000016514	sf1	61	78.780	Amphilophus_citrinellus
ENSSTOG00000009790	-	58	81.818	ENSAOCG00000010934	sf1	58	76.998	Amphiprion_ocellaris
ENSSTOG00000009790	-	58	81.818	ENSAPEG00000009498	sf1	58	76.998	Amphiprion_percula
ENSSTOG00000009790	-	58	82.620	ENSATEG00000001894	sf1	59	77.724	Anabas_testudineus
ENSSTOG00000009790	-	97	87.255	ENSANAG00000022607	-	99	87.562	Aotus_nancymaae
ENSSTOG00000009790	-	100	99.841	ENSANAG00000026664	-	98	99.841	Aotus_nancymaae
ENSSTOG00000009790	-	58	84.282	ENSACLG00000007633	sf1	61	79.562	Astatotilapia_calliptera
ENSSTOG00000009790	-	59	86.096	ENSAMXG00000003630	sf1	50	79.218	Astyanax_mexicanus
ENSSTOG00000009790	-	100	100.000	ENSBTAG00000001035	SF1	98	100.000	Bos_taurus
ENSSTOG00000009790	-	100	100.000	ENSCJAG00000002780	SF1	98	100.000	Callithrix_jacchus
ENSSTOG00000009790	-	100	99.681	ENSCAFG00000014239	SF1	98	99.681	Canis_familiaris
ENSSTOG00000009790	-	100	100.000	ENSCAFG00020014381	SF1	98	100.000	Canis_lupus_dingo
ENSSTOG00000009790	-	100	100.000	ENSCHIG00000025867	SF1	98	100.000	Capra_hircus
ENSSTOG00000009790	-	100	78.571	ENSCAPG00000010762	SF1	100	78.571	Cavia_aperea
ENSSTOG00000009790	-	100	99.203	ENSCPOG00000012290	SF1	100	99.203	Cavia_porcellus
ENSSTOG00000009790	-	100	99.681	ENSCCAG00000037881	SF1	98	99.681	Cebus_capucinus
ENSSTOG00000009790	-	100	80.255	ENSCCAG00000023781	-	92	85.045	Cebus_capucinus
ENSSTOG00000009790	-	100	100.000	ENSCATG00000011564	SF1	98	100.000	Cercocebus_atys
ENSSTOG00000009790	-	83	99.614	ENSCSAG00000007258	SF1	95	99.614	Chlorocebus_sabaeus
ENSSTOG00000009790	-	67	93.780	ENSCHOG00000006008	SF1	79	93.780	Choloepus_hoffmanni
ENSSTOG00000009790	-	82	86.460	ENSCPBG00000023763	SF1	66	85.106	Chrysemys_picta_bellii
ENSSTOG00000009790	-	60	58.115	ENSCING00000005564	-	74	60.372	Ciona_intestinalis
ENSSTOG00000009790	-	91	47.746	ENSCSAVG00000009055	-	56	66.667	Ciona_savignyi
ENSSTOG00000009790	-	100	100.000	ENSCANG00000042201	SF1	98	100.000	Colobus_angolensis_palliatus
ENSSTOG00000009790	-	100	99.522	ENSCGRG00001003677	Sf1	98	99.522	Cricetulus_griseus_chok1gshd
ENSSTOG00000009790	-	84	97.905	ENSCGRG00000001708	Sf1	97	97.905	Cricetulus_griseus_crigri
ENSSTOG00000009790	-	63	78.803	ENSCSEG00000014375	sf1	57	76.513	Cynoglossus_semilaevis
ENSSTOG00000009790	-	59	84.783	ENSCVAG00000001670	sf1	63	79.361	Cyprinodon_variegatus
ENSSTOG00000009790	-	78	80.867	ENSDARG00000008188	sf1	70	78.230	Danio_rerio
ENSSTOG00000009790	-	84	97.905	ENSDNOG00000001282	SF1	95	99.035	Dasypus_novemcinctus
ENSSTOG00000009790	-	100	100.000	ENSDORG00000016334	Sf1	98	100.000	Dipodomys_ordii
ENSSTOG00000009790	-	93	92.479	ENSETEG00000012830	SF1	82	91.453	Echinops_telfairi
ENSSTOG00000009790	-	83	99.228	ENSEASG00005018272	SF1	95	99.228	Equus_asinus_asinus
ENSSTOG00000009790	-	83	99.421	ENSECAG00000024544	SF1	95	99.421	Equus_caballus
ENSSTOG00000009790	-	63	99.237	ENSEEUG00000001058	SF1	100	99.237	Erinaceus_europaeus
ENSSTOG00000009790	-	58	81.720	ENSELUG00000013225	sf1	53	78.450	Esox_lucius
ENSSTOG00000009790	-	100	99.681	ENSFCAG00000012231	SF1	98	99.681	Felis_catus
ENSSTOG00000009790	-	100	90.938	ENSFDAG00000009833	SF1	99	91.693	Fukomys_damarensis
ENSSTOG00000009790	-	59	82.540	ENSFHEG00000022656	sf1	59	77.197	Fundulus_heteroclitus
ENSSTOG00000009790	-	50	88.308	ENSGMOG00000007469	sf1	59	88.308	Gadus_morhua
ENSSTOG00000009790	-	59	84.182	ENSGAFG00000019284	sf1	76	80.392	Gambusia_affinis
ENSSTOG00000009790	-	72	88.987	ENSGAGG00000021691	SF1	72	85.106	Gopherus_agassizii
ENSSTOG00000009790	-	58	83.200	ENSHBUG00000011598	sf1	59	78.657	Haplochromis_burtoni
ENSSTOG00000009790	-	100	99.522	ENSHGLG00000009541	SF1	98	99.522	Heterocephalus_glaber_female
ENSSTOG00000009790	-	96	85.075	ENSHGLG00100013879	-	99	87.894	Heterocephalus_glaber_male
ENSSTOG00000009790	-	72	86.882	ENSHGLG00100008255	-	92	86.452	Heterocephalus_glaber_male
ENSSTOG00000009790	-	69	89.195	ENSHGLG00100008076	-	87	87.037	Heterocephalus_glaber_male
ENSSTOG00000009790	-	59	81.365	ENSHCOG00000011388	sf1	58	76.755	Hippocampus_comes
ENSSTOG00000009790	-	100	99.841	ENSJJAG00000011788	Sf1	98	99.841	Jaculus_jaculus
ENSSTOG00000009790	-	59	83.508	ENSKMAG00000005854	sf1	61	78.450	Kryptolebias_marmoratus
ENSSTOG00000009790	-	76	82.415	ENSLBEG00000019836	sf1	50	86.890	Labrus_bergylta
ENSSTOG00000009790	-	65	78.986	ENSLACG00000018493	SF1	73	79.024	Latimeria_chalumnae
ENSSTOG00000009790	-	59	85.255	ENSLOCG00000002130	sf1	58	80.000	Lepisosteus_oculatus
ENSSTOG00000009790	-	100	95.327	ENSLAFG00000007201	SF1	99	95.327	Loxodonta_africana
ENSSTOG00000009790	-	100	100.000	ENSMFAG00000033122	SF1	98	100.000	Macaca_fascicularis
ENSSTOG00000009790	-	100	100.000	ENSMMUG00000022606	SF1	99	100.000	Macaca_mulatta
ENSSTOG00000009790	-	100	100.000	ENSMNEG00000037901	SF1	98	100.000	Macaca_nemestrina
ENSSTOG00000009790	-	100	100.000	ENSMLEG00000040706	SF1	95	100.000	Mandrillus_leucophaeus
ENSSTOG00000009790	-	58	82.888	ENSMAMG00000001780	sf1	58	77.966	Mastacembelus_armatus
ENSSTOG00000009790	-	58	82.933	ENSMZEG00005009196	sf1	59	78.417	Maylandia_zebra
ENSSTOG00000009790	-	100	99.362	ENSMAUG00000014064	Sf1	98	99.362	Mesocricetus_auratus
ENSSTOG00000009790	-	100	99.841	ENSMICG00000001202	SF1	98	99.841	Microcebus_murinus
ENSSTOG00000009790	-	100	99.203	ENSMOCG00000022038	Sf1	98	99.203	Microtus_ochrogaster
ENSSTOG00000009790	-	58	82.016	ENSMMOG00000020474	sf1	59	76.601	Mola_mola
ENSSTOG00000009790	-	71	94.382	ENSMODG00000029407	SF1	96	94.382	Monodelphis_domestica
ENSSTOG00000009790	-	100	99.363	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSSTOG00000009790	-	100	99.363	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSSTOG00000009790	-	100	99.363	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSSTOG00000009790	-	100	99.363	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSSTOG00000009790	-	100	99.841	ENSMPUG00000012684	SF1	98	99.841	Mustela_putorius_furo
ENSSTOG00000009790	-	100	99.682	ENSMLUG00000015217	-	98	99.682	Myotis_lucifugus
ENSSTOG00000009790	-	89	84.698	ENSMLUG00000029800	-	76	94.808	Myotis_lucifugus
ENSSTOG00000009790	-	100	99.362	ENSNGAG00000005550	Sf1	98	99.362	Nannospalax_galili
ENSSTOG00000009790	-	58	84.282	ENSNBRG00000017606	sf1	60	79.562	Neolamprologus_brichardi
ENSSTOG00000009790	-	100	99.841	ENSNLEG00000005236	-	98	99.841	Nomascus_leucogenys
ENSSTOG00000009790	-	82	98.246	ENSMEUG00000013424	SF1	97	98.246	Notamacropus_eugenii
ENSSTOG00000009790	-	76	99.158	ENSOPRG00000005008	SF1	96	99.158	Ochotona_princeps
ENSSTOG00000009790	-	100	89.185	ENSODEG00000006102	-	98	87.304	Octodon_degus
ENSSTOG00000009790	-	59	82.850	ENSONIG00000015728	sf1	59	78.657	Oreochromis_niloticus
ENSSTOG00000009790	-	64	85.961	ENSOANG00000002909	SF1	96	87.724	Ornithorhynchus_anatinus
ENSSTOG00000009790	-	100	99.522	ENSOCUG00000026486	SF1	99	99.522	Oryctolagus_cuniculus
ENSSTOG00000009790	-	60	80.879	ENSORLG00000011853	sf1	58	76.998	Oryzias_latipes
ENSSTOG00000009790	-	60	80.879	ENSORLG00020011834	sf1	58	76.998	Oryzias_latipes_hni
ENSSTOG00000009790	-	59	80.688	ENSORLG00015012855	sf1	58	76.755	Oryzias_latipes_hsok
ENSSTOG00000009790	-	59	82.011	ENSOMEG00000005210	sf1	59	77.966	Oryzias_melastigma
ENSSTOG00000009790	-	100	99.522	ENSOGAG00000016196	SF1	98	99.522	Otolemur_garnettii
ENSSTOG00000009790	-	85	92.665	ENSOARG00000009166	SF1	98	92.665	Ovis_aries
ENSSTOG00000009790	-	98	100.000	ENSPPAG00000002799	-	100	100.000	Pan_paniscus
ENSSTOG00000009790	-	100	99.681	ENSPPRG00000013566	SF1	100	100.000	Panthera_pardus
ENSSTOG00000009790	-	70	99.091	ENSPTIG00000016141	SF1	79	99.091	Panthera_tigris_altaica
ENSSTOG00000009790	-	100	99.681	ENSPTRG00000003846	SF1	98	99.681	Pan_troglodytes
ENSSTOG00000009790	-	100	95.518	ENSPANG00000020754	SF1	95	99.614	Papio_anubis
ENSSTOG00000009790	-	52	79.880	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSSTOG00000009790	-	56	87.179	ENSPSIG00000003610	SF1	97	75.490	Pelodiscus_sinensis
ENSSTOG00000009790	-	100	99.362	ENSPEMG00000010463	Sf1	98	99.362	Peromyscus_maniculatus_bairdii
ENSSTOG00000009790	-	100	98.885	ENSPCIG00000018173	SF1	99	98.885	Phascolarctos_cinereus
ENSSTOG00000009790	-	59	85.326	ENSPFOG00000013683	sf1	66	80.637	Poecilia_formosa
ENSSTOG00000009790	-	59	83.820	ENSPLAG00000018076	sf1	61	79.137	Poecilia_latipinna
ENSSTOG00000009790	-	59	83.820	ENSPMEG00000005726	sf1	62	79.376	Poecilia_mexicana
ENSSTOG00000009790	-	59	83.289	ENSPREG00000004155	sf1	59	78.657	Poecilia_reticulata
ENSSTOG00000009790	-	100	99.522	ENSPPYG00000003098	-	98	99.807	Pongo_abelii
ENSSTOG00000009790	-	84	97.905	ENSPCAG00000013631	SF1	78	97.905	Procavia_capensis
ENSSTOG00000009790	-	100	99.841	ENSPCOG00000027546	SF1	98	99.841	Propithecus_coquereli
ENSSTOG00000009790	-	84	97.905	ENSPVAG00000016938	SF1	79	97.905	Pteropus_vampyrus
ENSSTOG00000009790	-	58	82.933	ENSPNYG00000004673	sf1	59	78.417	Pundamilia_nyererei
ENSSTOG00000009790	-	59	85.867	ENSPNAG00000013072	sf1	59	79.805	Pygocentrus_nattereri
ENSSTOG00000009790	-	100	99.363	ENSRNOG00000021085	Sf1	98	99.363	Rattus_norvegicus
ENSSTOG00000009790	-	100	95.860	ENSRBIG00000042818	SF1	98	95.860	Rhinopithecus_bieti
ENSSTOG00000009790	-	100	87.025	ENSRROG00000045655	SF1	98	98.431	Rhinopithecus_roxellana
ENSSTOG00000009790	-	97	80.065	ENSSBOG00000022267	-	97	81.235	Saimiri_boliviensis_boliviensis
ENSSTOG00000009790	-	63	93.500	ENSSHAG00000006841	SF1	73	94.750	Sarcophilus_harrisii
ENSSTOG00000009790	-	63	80.750	ENSSFOG00015021978	sf1	55	77.240	Scleropages_formosus
ENSSTOG00000009790	-	65	76.247	ENSSMAG00000007549	sf1	62	76.667	Scophthalmus_maximus
ENSSTOG00000009790	-	59	80.688	ENSSDUG00000003903	sf1	61	77.240	Seriola_dumerili
ENSSTOG00000009790	-	58	81.016	ENSSLDG00000013075	sf1	59	77.240	Seriola_lalandi_dorsalis
ENSSTOG00000009790	-	82	95.745	ENSSARG00000008180	SF1	100	95.745	Sorex_araneus
ENSSTOG00000009790	-	80	82.759	ENSSPUG00000012907	SF1	86	81.226	Sphenodon_punctatus
ENSSTOG00000009790	-	58	81.551	ENSSPAG00000019060	sf1	58	76.998	Stegastes_partitus
ENSSTOG00000009790	-	100	99.841	ENSSSCG00000013021	SF1	100	99.809	Sus_scrofa
ENSSTOG00000009790	-	83	62.121	ENSTNIG00000004820	sf1	77	69.417	Tetraodon_nigroviridis
ENSSTOG00000009790	-	97	84.804	ENSTBEG00000013133	SF1	79	100.000	Tupaia_belangeri
ENSSTOG00000009790	-	83	95.174	ENSTTRG00000008857	SF1	96	95.543	Tursiops_truncatus
ENSSTOG00000009790	-	83	97.137	ENSUAMG00000011977	SF1	100	97.137	Ursus_americanus
ENSSTOG00000009790	-	83	97.593	ENSUMAG00000007268	SF1	89	100.000	Ursus_maritimus
ENSSTOG00000009790	-	56	100.000	ENSVPAG00000011912	SF1	66	100.000	Vicugna_pacos
ENSSTOG00000009790	-	83	99.614	ENSVVUG00000028585	SF1	95	99.614	Vulpes_vulpes
ENSSTOG00000009790	-	97	70.447	ENSXETG00000008434	sf1	67	81.863	Xenopus_tropicalis
ENSSTOG00000009790	-	58	85.205	ENSXCOG00000003704	sf1	75	80.941	Xiphophorus_couchianus
ENSSTOG00000009790	-	59	83.333	ENSXMAG00000007822	sf1	61	79.376	Xiphophorus_maculatus