EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000009957 (Gene tree)
Gene ID: 101975439
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 7886 bases
Position: chrJH393280.1:7849329-7857214
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000025816	CPSF_A	PF03178.15	7.8e-92	1	1
ENSSTOP00000008970	CPSF_A	PF03178.15	7.9e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000009999	CPSF1-201	4236	XM_013356816	ENSSTOP00000008970	1411 (aa)	-	I3MEM3
ENSSTOT00000032097	CPSF1-202	4170	-	ENSSTOP00000025816	1389 (aa)	-	A0A287CX08

Gene Model

Click here to download ENSSTOG00000009957's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000009957's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000009957	CPSF1	99	96.717	ENSG00000071894	CPSF1	97	96.717	Homo_sapiens
ENSSTOG00000009957	CPSF1	99	77.816	ENSAPOG00000019621	cpsf1	100	77.932	Acanthochromis_polyacanthus
ENSSTOG00000009957	CPSF1	99	94.868	ENSAMEG00000005557	CPSF1	99	94.868	Ailuropoda_melanoleuca
ENSSTOG00000009957	CPSF1	99	78.403	ENSACIG00000006112	cpsf1	97	78.190	Amphilophus_citrinellus
ENSSTOG00000009957	CPSF1	99	79.291	ENSAOCG00000007120	cpsf1	97	79.362	Amphiprion_ocellaris
ENSSTOG00000009957	CPSF1	99	79.574	ENSAPEG00000005755	cpsf1	97	79.645	Amphiprion_percula
ENSSTOG00000009957	CPSF1	98	78.536	ENSATEG00000011097	cpsf1	99	77.801	Anabas_testudineus
ENSSTOG00000009957	CPSF1	92	80.938	ENSACAG00000009655	CPSF1	96	80.938	Anolis_carolinensis
ENSSTOG00000009957	CPSF1	99	96.643	ENSANAG00000036514	CPSF1	97	96.643	Aotus_nancymaae
ENSSTOG00000009957	CPSF1	98	78.526	ENSACLG00000012231	cpsf1	99	78.246	Astatotilapia_calliptera
ENSSTOG00000009957	CPSF1	99	73.891	ENSAMXG00000008485	cpsf1	96	73.891	Astyanax_mexicanus
ENSSTOG00000009957	CPSF1	99	93.973	ENSBTAG00000008355	CPSF1	100	94.257	Bos_taurus
ENSSTOG00000009957	CPSF1	98	32.753	WBGene00022301	cpsf-1	100	40.449	Caenorhabditis_elegans
ENSSTOG00000009957	CPSF1	99	96.500	ENSCJAG00000021421	CPSF1	97	96.500	Callithrix_jacchus
ENSSTOG00000009957	CPSF1	99	96.220	ENSCAFG00000001600	CPSF1	100	96.306	Canis_familiaris
ENSSTOG00000009957	CPSF1	99	96.148	ENSCAFG00020020821	CPSF1	97	96.148	Canis_lupus_dingo
ENSSTOG00000009957	CPSF1	99	90.128	ENSCHIG00000015833	CPSF1	97	90.128	Capra_hircus
ENSSTOG00000009957	CPSF1	99	97.214	ENSTSYG00000028560	CPSF1	97	97.214	Carlito_syrichta
ENSSTOG00000009957	CPSF1	99	95.875	ENSCAPG00000014921	CPSF1	99	95.875	Cavia_aperea
ENSSTOG00000009957	CPSF1	99	95.286	ENSCPOG00000011448	CPSF1	97	95.286	Cavia_porcellus
ENSSTOG00000009957	CPSF1	99	96.643	ENSCCAG00000037658	CPSF1	97	96.643	Cebus_capucinus
ENSSTOG00000009957	CPSF1	99	96.429	ENSCATG00000037234	CPSF1	97	96.429	Cercocebus_atys
ENSSTOG00000009957	CPSF1	99	97.141	ENSCLAG00000012166	CPSF1	97	97.141	Chinchilla_lanigera
ENSSTOG00000009957	CPSF1	99	96.571	ENSCSAG00000008502	CPSF1	97	96.571	Chlorocebus_sabaeus
ENSSTOG00000009957	CPSF1	98	87.346	ENSCPBG00000018910	CPSF1	93	87.346	Chrysemys_picta_bellii
ENSSTOG00000009957	CPSF1	95	47.630	ENSCING00000000514	-	97	47.491	Ciona_intestinalis
ENSSTOG00000009957	CPSF1	99	47.514	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSSTOG00000009957	CPSF1	99	92.445	ENSCANG00000032760	CPSF1	97	92.445	Colobus_angolensis_palliatus
ENSSTOG00000009957	CPSF1	99	96.926	ENSCGRG00001016344	Cpsf1	97	96.926	Cricetulus_griseus_chok1gshd
ENSSTOG00000009957	CPSF1	99	94.711	ENSCGRG00000003118	Cpsf1	97	94.711	Cricetulus_griseus_crigri
ENSSTOG00000009957	CPSF1	99	77.770	ENSCSEG00000013464	cpsf1	99	77.190	Cynoglossus_semilaevis
ENSSTOG00000009957	CPSF1	87	76.491	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSSTOG00000009957	CPSF1	98	79.872	ENSDARG00000034178	cpsf1	97	79.362	Danio_rerio
ENSSTOG00000009957	CPSF1	65	96.522	ENSDNOG00000043654	CPSF1	87	96.522	Dasypus_novemcinctus
ENSSTOG00000009957	CPSF1	99	96.214	ENSDORG00000006278	Cpsf1	99	96.214	Dipodomys_ordii
ENSSTOG00000009957	CPSF1	98	45.099	FBgn0024698	Cpsf160	96	45.028	Drosophila_melanogaster
ENSSTOG00000009957	CPSF1	79	97.987	ENSETEG00000006022	CPSF1	79	97.987	Echinops_telfairi
ENSSTOG00000009957	CPSF1	99	96.790	ENSEASG00005010774	CPSF1	97	96.790	Equus_asinus_asinus
ENSSTOG00000009957	CPSF1	99	96.790	ENSECAG00000022209	CPSF1	97	96.790	Equus_caballus
ENSSTOG00000009957	CPSF1	98	94.885	ENSEEUG00000000471	CPSF1	96	94.885	Erinaceus_europaeus
ENSSTOG00000009957	CPSF1	99	78.076	ENSELUG00000012271	cpsf1	100	77.881	Esox_lucius
ENSSTOG00000009957	CPSF1	99	97.069	ENSFDAG00000016060	CPSF1	97	97.069	Fukomys_damarensis
ENSSTOG00000009957	CPSF1	99	76.483	ENSFHEG00000016801	cpsf1	97	76.596	Fundulus_heteroclitus
ENSSTOG00000009957	CPSF1	99	77.589	ENSGMOG00000000796	cpsf1	97	77.573	Gadus_morhua
ENSSTOG00000009957	CPSF1	94	83.929	ENSGAFG00000018890	cpsf1	96	83.929	Gambusia_affinis
ENSSTOG00000009957	CPSF1	99	78.249	ENSGACG00000008703	cpsf1	100	75.274	Gasterosteus_aculeatus
ENSSTOG00000009957	CPSF1	99	83.619	ENSGAGG00000004276	CPSF1	98	87.040	Gopherus_agassizii
ENSSTOG00000009957	CPSF1	99	96.783	ENSGGOG00000016185	CPSF1	97	96.783	Gorilla_gorilla
ENSSTOG00000009957	CPSF1	99	79.473	ENSHBUG00000018900	cpsf1	97	79.330	Haplochromis_burtoni
ENSSTOG00000009957	CPSF1	99	96.855	ENSHGLG00000016139	CPSF1	97	96.855	Heterocephalus_glaber_female
ENSSTOG00000009957	CPSF1	99	96.783	ENSHGLG00100009750	CPSF1	97	96.783	Heterocephalus_glaber_male
ENSSTOG00000009957	CPSF1	99	76.971	ENSHCOG00000018509	cpsf1	97	76.762	Hippocampus_comes
ENSSTOG00000009957	CPSF1	98	76.550	ENSIPUG00000011259	cpsf1	97	75.809	Ictalurus_punctatus
ENSSTOG00000009957	CPSF1	99	96.640	ENSJJAG00000023002	Cpsf1	97	96.640	Jaculus_jaculus
ENSSTOG00000009957	CPSF1	90	85.580	ENSKMAG00000001940	cpsf1	96	85.580	Kryptolebias_marmoratus
ENSSTOG00000009957	CPSF1	99	76.864	ENSLBEG00000003601	cpsf1	97	77.266	Labrus_bergylta
ENSSTOG00000009957	CPSF1	84	81.851	ENSLACG00000000233	CPSF1	88	81.851	Latimeria_chalumnae
ENSSTOG00000009957	CPSF1	99	77.896	ENSLOCG00000008484	cpsf1	97	78.252	Lepisosteus_oculatus
ENSSTOG00000009957	CPSF1	99	95.221	ENSLAFG00000022601	CPSF1	100	95.221	Loxodonta_africana
ENSSTOG00000009957	CPSF1	99	96.429	ENSMFAG00000037013	CPSF1	97	96.429	Macaca_fascicularis
ENSSTOG00000009957	CPSF1	99	96.500	ENSMMUG00000007380	CPSF1	97	96.500	Macaca_mulatta
ENSSTOG00000009957	CPSF1	99	96.640	ENSMNEG00000043564	CPSF1	100	96.640	Macaca_nemestrina
ENSSTOG00000009957	CPSF1	99	96.429	ENSMLEG00000043010	CPSF1	97	96.429	Mandrillus_leucophaeus
ENSSTOG00000009957	CPSF1	98	78.647	ENSMAMG00000003803	cpsf1	100	78.116	Mastacembelus_armatus
ENSSTOG00000009957	CPSF1	98	78.233	ENSMZEG00005001168	cpsf1	97	78.089	Maylandia_zebra
ENSSTOG00000009957	CPSF1	99	96.640	ENSMAUG00000003601	Cpsf1	97	96.640	Mesocricetus_auratus
ENSSTOG00000009957	CPSF1	99	96.998	ENSMICG00000015767	CPSF1	97	96.998	Microcebus_murinus
ENSSTOG00000009957	CPSF1	99	96.569	ENSMOCG00000022758	Cpsf1	97	96.569	Microtus_ochrogaster
ENSSTOG00000009957	CPSF1	99	79.185	ENSMMOG00000021245	cpsf1	96	79.328	Mola_mola
ENSSTOG00000009957	CPSF1	99	92.877	ENSMODG00000010755	CPSF1	97	92.877	Monodelphis_domestica
ENSSTOG00000009957	CPSF1	99	77.646	ENSMALG00000020545	cpsf1	97	77.507	Monopterus_albus
ENSSTOG00000009957	CPSF1	99	97.141	MGP_CAROLIEiJ_G0019936	Cpsf1	97	97.141	Mus_caroli
ENSSTOG00000009957	CPSF1	99	97.069	ENSMUSG00000034022	Cpsf1	97	97.069	Mus_musculus
ENSSTOG00000009957	CPSF1	99	96.998	MGP_PahariEiJ_G0019946	Cpsf1	97	96.998	Mus_pahari
ENSSTOG00000009957	CPSF1	99	97.069	MGP_SPRETEiJ_G0020839	Cpsf1	97	97.069	Mus_spretus
ENSSTOG00000009957	CPSF1	96	95.569	ENSMPUG00000006419	CPSF1	93	95.569	Mustela_putorius_furo
ENSSTOG00000009957	CPSF1	99	96.426	ENSNGAG00000022460	Cpsf1	97	96.426	Nannospalax_galili
ENSSTOG00000009957	CPSF1	98	76.608	ENSNBRG00000000813	cpsf1	96	76.608	Neolamprologus_brichardi
ENSSTOG00000009957	CPSF1	85	84.205	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
ENSSTOG00000009957	CPSF1	84	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSSTOG00000009957	CPSF1	62	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSSTOG00000009957	CPSF1	99	97.284	ENSODEG00000013995	CPSF1	97	97.284	Octodon_degus
ENSSTOG00000009957	CPSF1	99	79.971	ENSONIG00000007676	cpsf1	97	79.758	Oreochromis_niloticus
ENSSTOG00000009957	CPSF1	60	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSSTOG00000009957	CPSF1	98	77.856	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSSTOG00000009957	CPSF1	98	77.997	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSSTOG00000009957	CPSF1	98	77.841	ENSORLG00015009979	cpsf1	97	77.117	Oryzias_latipes_hsok
ENSSTOG00000009957	CPSF1	98	77.809	ENSOMEG00000011849	cpsf1	97	77.435	Oryzias_melastigma
ENSSTOG00000009957	CPSF1	99	96.857	ENSOGAG00000000315	CPSF1	97	96.857	Otolemur_garnettii
ENSSTOG00000009957	CPSF1	99	96.786	ENSPPAG00000019280	CPSF1	97	96.786	Pan_paniscus
ENSSTOG00000009957	CPSF1	99	95.088	ENSPTRG00000051253	-	97	95.088	Pan_troglodytes
ENSSTOG00000009957	CPSF1	99	96.786	ENSPTRG00000049288	-	97	96.786	Pan_troglodytes
ENSSTOG00000009957	CPSF1	99	96.497	ENSPANG00000015005	CPSF1	100	96.497	Papio_anubis
ENSSTOG00000009957	CPSF1	98	80.846	ENSPKIG00000002582	cpsf1	100	80.769	Paramormyrops_kingsleyae
ENSSTOG00000009957	CPSF1	99	92.877	ENSPCIG00000009035	CPSF1	97	92.877	Phascolarctos_cinereus
ENSSTOG00000009957	CPSF1	99	76.045	ENSPFOG00000012870	cpsf1	97	76.045	Poecilia_formosa
ENSSTOG00000009957	CPSF1	99	76.048	ENSPREG00000016307	cpsf1	97	75.852	Poecilia_reticulata
ENSSTOG00000009957	CPSF1	99	88.071	ENSPPYG00000018973	CPSF1	96	88.000	Pongo_abelii
ENSSTOG00000009957	CPSF1	93	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSSTOG00000009957	CPSF1	99	93.286	ENSPCOG00000020001	CPSF1	100	90.278	Propithecus_coquereli
ENSSTOG00000009957	CPSF1	89	99.143	ENSPVAG00000006761	CPSF1	88	99.143	Pteropus_vampyrus
ENSSTOG00000009957	CPSF1	99	78.411	ENSPNYG00000004906	cpsf1	99	78.386	Pundamilia_nyererei
ENSSTOG00000009957	CPSF1	99	75.071	ENSPNAG00000024395	cpsf1	97	75.071	Pygocentrus_nattereri
ENSSTOG00000009957	CPSF1	99	97.069	ENSRNOG00000030705	Cpsf1	97	97.069	Rattus_norvegicus
ENSSTOG00000009957	CPSF1	99	96.500	ENSRBIG00000044907	CPSF1	97	96.500	Rhinopithecus_bieti
ENSSTOG00000009957	CPSF1	99	96.429	ENSRROG00000044861	CPSF1	97	96.429	Rhinopithecus_roxellana
ENSSTOG00000009957	CPSF1	99	96.640	ENSSBOG00000027177	CPSF1	100	96.640	Saimiri_boliviensis_boliviensis
ENSSTOG00000009957	CPSF1	99	92.877	ENSSHAG00000006500	CPSF1	97	92.877	Sarcophilus_harrisii
ENSSTOG00000009957	CPSF1	97	80.783	ENSSFOG00015004606	cpsf1	100	80.783	Scleropages_formosus
ENSSTOG00000009957	CPSF1	99	77.855	ENSSMAG00000020547	cpsf1	97	77.786	Scophthalmus_maximus
ENSSTOG00000009957	CPSF1	98	79.741	ENSSDUG00000001100	cpsf1	96	79.885	Seriola_dumerili
ENSSTOG00000009957	CPSF1	98	80.014	ENSSLDG00000003619	cpsf1	96	80.014	Seriola_lalandi_dorsalis
ENSSTOG00000009957	CPSF1	88	92.512	ENSSARG00000003643	CPSF1	88	92.512	Sorex_araneus
ENSSTOG00000009957	CPSF1	98	87.284	ENSSPUG00000014396	CPSF1	100	87.284	Sphenodon_punctatus
ENSSTOG00000009957	CPSF1	99	77.940	ENSSPAG00000005349	cpsf1	97	78.079	Stegastes_partitus
ENSSTOG00000009957	CPSF1	99	95.578	ENSSSCG00000005906	CPSF1	97	95.578	Sus_scrofa
ENSSTOG00000009957	CPSF1	98	77.476	ENSTRUG00000013134	cpsf1	99	77.358	Takifugu_rubripes
ENSSTOG00000009957	CPSF1	99	78.430	ENSTNIG00000014027	cpsf1	97	78.319	Tetraodon_nigroviridis
ENSSTOG00000009957	CPSF1	76	93.519	ENSTBEG00000001756	CPSF1	90	93.519	Tupaia_belangeri
ENSSTOG00000009957	CPSF1	89	97.409	ENSTTRG00000001937	CPSF1	86	97.409	Tursiops_truncatus
ENSSTOG00000009957	CPSF1	99	96.512	ENSUAMG00000006476	CPSF1	98	96.512	Ursus_americanus
ENSSTOG00000009957	CPSF1	99	77.778	ENSXCOG00000003608	cpsf1	96	77.921	Xiphophorus_couchianus
ENSSTOG00000009957	CPSF1	99	77.380	ENSXMAG00000005798	cpsf1	96	77.523	Xiphophorus_maculatus