EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000012580 (Gene tree)
Gene ID: 101968687
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 58784 bases
Position: chrJH393522.1:1331073-1389856
Accession: 101968687
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000011290	RNA_pol_Rpb1_5	PF04998.17	4.9e-101	1	1
ENSSTOP00000011290	RNA_pol_Rpb1_4	PF05000.17	1.6e-24	1	1
ENSSTOP00000011290	RNA_pol_Rpb1_2	PF00623.20	3.6e-70	1	1
ENSSTOP00000011290	RNA_pol_Rpb1_3	PF04983.18	4.9e-37	1	1
ENSSTOP00000011290	RNA_pol_Rpb1_1	PF04997.12	2.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000012598	POLR1A-201	5133	XM_005338444	ENSSTOP00000011290	1710 (aa)	XP_005338501	I3MJG5

Gene Model

Click here to download ENSSTOG00000012580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000012580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000012580	POLR1A	60	32.653	ENSSTOG00000012983	POLR3A	69	32.653

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000012580	POLR1A	99	87.376	ENSG00000068654	POLR1A	99	87.202	Homo_sapiens
ENSSTOG00000012580	POLR1A	69	67.424	ENSAPOG00000017945	polr1a	99	67.568	Acanthochromis_polyacanthus
ENSSTOG00000012580	POLR1A	100	87.544	ENSAMEG00000005807	POLR1A	100	90.676	Ailuropoda_melanoleuca
ENSSTOG00000012580	POLR1A	100	62.536	ENSACIG00000022147	polr1a	99	62.762	Amphilophus_citrinellus
ENSSTOG00000012580	POLR1A	99	65.145	ENSAOCG00000017336	polr1a	99	67.921	Amphiprion_ocellaris
ENSSTOG00000012580	POLR1A	95	71.528	ENSAPEG00000016105	polr1a	98	72.857	Amphiprion_percula
ENSSTOG00000012580	POLR1A	100	65.873	ENSATEG00000016773	polr1a	100	65.238	Anabas_testudineus
ENSSTOG00000012580	POLR1A	86	72.090	ENSAPLG00000013871	POLR1A	99	71.818	Anas_platyrhynchos
ENSSTOG00000012580	POLR1A	99	68.928	ENSACAG00000012141	POLR1A	99	68.957	Anolis_carolinensis
ENSSTOG00000012580	POLR1A	99	86.321	ENSANAG00000033927	POLR1A	99	86.263	Aotus_nancymaae
ENSSTOG00000012580	POLR1A	100	61.623	ENSACLG00000020541	polr1a	100	61.852	Astatotilapia_calliptera
ENSSTOG00000012580	POLR1A	100	86.911	ENSBTAG00000006481	POLR1A	100	86.969	Bos_taurus
ENSSTOG00000012580	POLR1A	99	39.292	WBGene00012999	rpoa-1	98	38.876	Caenorhabditis_elegans
ENSSTOG00000012580	POLR1A	99	85.523	ENSCJAG00000019547	POLR1A	99	85.806	Callithrix_jacchus
ENSSTOG00000012580	POLR1A	100	87.384	ENSCAFG00000007613	POLR1A	100	87.027	Canis_familiaris
ENSSTOG00000012580	POLR1A	100	87.348	ENSCAFG00020014752	POLR1A	100	86.992	Canis_lupus_dingo
ENSSTOG00000012580	POLR1A	100	86.504	ENSCHIG00000018204	POLR1A	100	86.281	Capra_hircus
ENSSTOG00000012580	POLR1A	100	85.806	ENSTSYG00000002761	POLR1A	100	85.681	Carlito_syrichta
ENSSTOG00000012580	POLR1A	97	83.303	ENSCAPG00000010132	POLR1A	100	83.383	Cavia_aperea
ENSSTOG00000012580	POLR1A	100	87.631	ENSCPOG00000012350	POLR1A	100	87.858	Cavia_porcellus
ENSSTOG00000012580	POLR1A	99	86.105	ENSCCAG00000019839	POLR1A	99	86.387	Cebus_capucinus
ENSSTOG00000012580	POLR1A	99	87.842	ENSCATG00000029786	POLR1A	99	87.667	Cercocebus_atys
ENSSTOG00000012580	POLR1A	100	88.023	ENSCLAG00000005187	POLR1A	100	87.958	Chinchilla_lanigera
ENSSTOG00000012580	POLR1A	99	88.016	ENSCSAG00000016251	POLR1A	99	87.842	Chlorocebus_sabaeus
ENSSTOG00000012580	POLR1A	99	74.446	ENSCPBG00000001115	POLR1A	99	73.492	Chrysemys_picta_bellii
ENSSTOG00000012580	POLR1A	93	54.839	ENSCSAVG00000007184	-	97	50.000	Ciona_savignyi
ENSSTOG00000012580	POLR1A	99	84.817	ENSCANG00000031785	POLR1A	99	84.700	Colobus_angolensis_palliatus
ENSSTOG00000012580	POLR1A	100	82.887	ENSCGRG00001006651	Polr1a	100	82.829	Cricetulus_griseus_chok1gshd
ENSSTOG00000012580	POLR1A	60	85.561	ENSCGRG00000010834	Polr1a	100	85.463	Cricetulus_griseus_crigri
ENSSTOG00000012580	POLR1A	99	62.099	ENSCSEG00000020190	polr1a	99	61.172	Cynoglossus_semilaevis
ENSSTOG00000012580	POLR1A	100	63.542	ENSCVAG00000020941	polr1a	100	63.810	Cyprinodon_variegatus
ENSSTOG00000012580	POLR1A	100	65.159	ENSDARG00000098375	polr1a	100	65.253	Danio_rerio
ENSSTOG00000012580	POLR1A	100	81.675	ENSDNOG00000010829	POLR1A	100	81.781	Dasypus_novemcinctus
ENSSTOG00000012580	POLR1A	100	87.275	ENSDORG00000008298	Polr1a	100	87.042	Dipodomys_ordii
ENSSTOG00000012580	POLR1A	79	45.066	FBgn0019938	RpI1	99	43.376	Drosophila_melanogaster
ENSSTOG00000012580	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSSTOG00000012580	POLR1A	81	66.667	ENSEBUG00000005667	-	93	66.667	Eptatretus_burgeri
ENSSTOG00000012580	POLR1A	100	87.631	ENSEASG00005001625	POLR1A	100	88.095	Equus_asinus_asinus
ENSSTOG00000012580	POLR1A	100	87.573	ENSECAG00000010092	POLR1A	99	92.004	Equus_caballus
ENSSTOG00000012580	POLR1A	100	87.573	ENSECAG00000030510	-	99	92.004	Equus_caballus
ENSSTOG00000012580	POLR1A	100	87.573	ENSECAG00000036306	-	99	92.004	Equus_caballus
ENSSTOG00000012580	POLR1A	85	91.489	ENSEEUG00000000676	POLR1A	85	91.111	Erinaceus_europaeus
ENSSTOG00000012580	POLR1A	99	66.277	ENSELUG00000012769	polr1a	99	66.277	Esox_lucius
ENSSTOG00000012580	POLR1A	100	87.442	ENSFCAG00000008966	POLR1A	100	87.442	Felis_catus
ENSSTOG00000012580	POLR1A	99	70.907	ENSFALG00000010082	POLR1A	99	71.319	Ficedula_albicollis
ENSSTOG00000012580	POLR1A	100	87.930	ENSFDAG00000013726	POLR1A	100	87.631	Fukomys_damarensis
ENSSTOG00000012580	POLR1A	100	61.114	ENSFHEG00000005996	polr1a	100	61.243	Fundulus_heteroclitus
ENSSTOG00000012580	POLR1A	99	59.648	ENSGMOG00000002230	polr1a	99	59.346	Gadus_morhua
ENSSTOG00000012580	POLR1A	91	68.706	ENSGALG00000038160	-	99	68.706	Gallus_gallus
ENSSTOG00000012580	POLR1A	100	64.898	ENSGAFG00000015266	polr1a	100	64.518	Gambusia_affinis
ENSSTOG00000012580	POLR1A	100	63.600	ENSGACG00000018791	polr1a	100	63.857	Gasterosteus_aculeatus
ENSSTOG00000012580	POLR1A	89	75.506	ENSGAGG00000004984	-	96	82.084	Gopherus_agassizii
ENSSTOG00000012580	POLR1A	99	87.435	ENSGGOG00000001788	POLR1A	99	87.260	Gorilla_gorilla
ENSSTOG00000012580	POLR1A	90	64.314	ENSHBUG00000020021	polr1a	96	68.122	Haplochromis_burtoni
ENSSTOG00000012580	POLR1A	100	88.040	ENSHGLG00000006334	POLR1A	100	87.974	Heterocephalus_glaber_female
ENSSTOG00000012580	POLR1A	100	87.784	ENSHGLG00100006614	POLR1A	100	87.718	Heterocephalus_glaber_male
ENSSTOG00000012580	POLR1A	99	61.946	ENSHCOG00000003345	polr1a	99	60.957	Hippocampus_comes
ENSSTOG00000012580	POLR1A	100	65.523	ENSIPUG00000013174	polr1a	100	64.535	Ictalurus_punctatus
ENSSTOG00000012580	POLR1A	100	87.522	ENSJJAG00000013113	Polr1a	100	87.114	Jaculus_jaculus
ENSSTOG00000012580	POLR1A	100	64.634	ENSKMAG00000007399	polr1a	100	63.858	Kryptolebias_marmoratus
ENSSTOG00000012580	POLR1A	94	67.746	ENSLBEG00000015401	polr1a	99	67.910	Labrus_bergylta
ENSSTOG00000012580	POLR1A	53	76.965	ENSLACG00000003218	polr1a	99	76.965	Latimeria_chalumnae
ENSSTOG00000012580	POLR1A	100	69.641	ENSLOCG00000010881	polr1a	100	69.480	Lepisosteus_oculatus
ENSSTOG00000012580	POLR1A	100	86.369	ENSLAFG00000014948	POLR1A	100	86.113	Loxodonta_africana
ENSSTOG00000012580	POLR1A	99	87.318	ENSMFAG00000046097	POLR1A	99	87.609	Macaca_fascicularis
ENSSTOG00000012580	POLR1A	99	87.318	ENSMMUG00000015815	POLR1A	99	87.609	Macaca_mulatta
ENSSTOG00000012580	POLR1A	99	87.260	ENSMNEG00000043313	POLR1A	99	87.551	Macaca_nemestrina
ENSSTOG00000012580	POLR1A	99	86.795	ENSMLEG00000042428	POLR1A	99	87.144	Mandrillus_leucophaeus
ENSSTOG00000012580	POLR1A	100	64.791	ENSMAMG00000016565	polr1a	100	65.636	Mastacembelus_armatus
ENSSTOG00000012580	POLR1A	100	65.159	ENSMZEG00005004915	polr1a	99	65.558	Maylandia_zebra
ENSSTOG00000012580	POLR1A	99	68.641	ENSMGAG00000013111	POLR1A	99	68.583	Meleagris_gallopavo
ENSSTOG00000012580	POLR1A	92	87.476	ENSMAUG00000008497	Polr1a	100	87.413	Mesocricetus_auratus
ENSSTOG00000012580	POLR1A	100	87.348	ENSMICG00000000757	POLR1A	100	86.999	Microcebus_murinus
ENSSTOG00000012580	POLR1A	100	87.303	ENSMOCG00000000122	Polr1a	100	86.896	Microtus_ochrogaster
ENSSTOG00000012580	POLR1A	100	64.589	ENSMMOG00000010216	polr1a	100	64.023	Mola_mola
ENSSTOG00000012580	POLR1A	99	75.202	ENSMODG00000009335	POLR1A	99	74.856	Monodelphis_domestica
ENSSTOG00000012580	POLR1A	100	65.465	ENSMALG00000013363	polr1a	100	65.313	Monopterus_albus
ENSSTOG00000012580	POLR1A	100	85.556	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.498	Mus_caroli
ENSSTOG00000012580	POLR1A	100	85.498	ENSMUSG00000049553	Polr1a	100	85.440	Mus_musculus
ENSSTOG00000012580	POLR1A	100	86.364	MGP_PahariEiJ_G0022230	Polr1a	100	86.189	Mus_pahari
ENSSTOG00000012580	POLR1A	100	83.648	MGP_SPRETEiJ_G0029499	Polr1a	100	84.048	Mus_spretus
ENSSTOG00000012580	POLR1A	100	87.209	ENSMPUG00000009135	POLR1A	100	87.151	Mustela_putorius_furo
ENSSTOG00000012580	POLR1A	100	85.756	ENSMLUG00000015723	POLR1A	100	85.871	Myotis_lucifugus
ENSSTOG00000012580	POLR1A	100	88.068	ENSNGAG00000017907	Polr1a	100	88.009	Nannospalax_galili
ENSSTOG00000012580	POLR1A	100	65.139	ENSNBRG00000000519	polr1a	100	65.579	Neolamprologus_brichardi
ENSSTOG00000012580	POLR1A	99	85.408	ENSNLEG00000002264	POLR1A	99	85.235	Nomascus_leucogenys
ENSSTOG00000012580	POLR1A	75	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSSTOG00000012580	POLR1A	99	81.099	ENSOPRG00000008269	POLR1A	100	80.981	Ochotona_princeps
ENSSTOG00000012580	POLR1A	100	87.755	ENSODEG00000003542	POLR1A	100	87.981	Octodon_degus
ENSSTOG00000012580	POLR1A	100	65.469	ENSONIG00000015895	polr1a	99	65.908	Oreochromis_niloticus
ENSSTOG00000012580	POLR1A	100	87.580	ENSOCUG00000010138	POLR1A	100	87.872	Oryctolagus_cuniculus
ENSSTOG00000012580	POLR1A	100	64.921	ENSORLG00000008753	polr1a	99	64.764	Oryzias_latipes
ENSSTOG00000012580	POLR1A	100	63.393	ENSORLG00020020726	polr1a	99	63.483	Oryzias_latipes_hni
ENSSTOG00000012580	POLR1A	96	74.468	ENSORLG00015016071	polr1a	99	74.444	Oryzias_latipes_hsok
ENSSTOG00000012580	POLR1A	100	87.166	ENSOGAG00000004031	POLR1A	100	86.876	Otolemur_garnettii
ENSSTOG00000012580	POLR1A	100	86.061	ENSOARG00000020601	POLR1A	100	86.616	Ovis_aries
ENSSTOG00000012580	POLR1A	99	87.435	ENSPPAG00000042450	POLR1A	99	87.260	Pan_paniscus
ENSSTOG00000012580	POLR1A	100	87.558	ENSPPRG00000006702	POLR1A	100	87.558	Panthera_pardus
ENSSTOG00000012580	POLR1A	100	87.080	ENSPTIG00000018783	POLR1A	100	87.080	Panthera_tigris_altaica
ENSSTOG00000012580	POLR1A	99	86.736	ENSPTRG00000012147	POLR1A	99	87.260	Pan_troglodytes
ENSSTOG00000012580	POLR1A	99	87.900	ENSPANG00000025908	POLR1A	99	87.725	Papio_anubis
ENSSTOG00000012580	POLR1A	94	76.429	ENSPKIG00000005468	polr1a	98	76.429	Paramormyrops_kingsleyae
ENSSTOG00000012580	POLR1A	63	71.840	ENSPSIG00000009321	-	99	70.826	Pelodiscus_sinensis
ENSSTOG00000012580	POLR1A	55	68.410	ENSPMGG00000009718	polr1a	95	68.410	Periophthalmus_magnuspinnatus
ENSSTOG00000012580	POLR1A	100	87.893	ENSPEMG00000022224	Polr1a	100	87.835	Peromyscus_maniculatus_bairdii
ENSSTOG00000012580	POLR1A	95	78.458	ENSPCIG00000004222	POLR1A	99	78.383	Phascolarctos_cinereus
ENSSTOG00000012580	POLR1A	100	64.692	ENSPFOG00000005025	polr1a	100	64.257	Poecilia_formosa
ENSSTOG00000012580	POLR1A	100	65.015	ENSPLAG00000021389	polr1a	100	64.956	Poecilia_latipinna
ENSSTOG00000012580	POLR1A	100	63.103	ENSPMEG00000006463	polr1a	100	63.393	Poecilia_mexicana
ENSSTOG00000012580	POLR1A	100	64.492	ENSPREG00000002389	polr1a	100	64.730	Poecilia_reticulata
ENSSTOG00000012580	POLR1A	99	86.969	ENSPPYG00000012217	POLR1A	99	86.853	Pongo_abelii
ENSSTOG00000012580	POLR1A	91	84.783	ENSPCAG00000011582	POLR1A	91	84.639	Procavia_capensis
ENSSTOG00000012580	POLR1A	100	87.696	ENSPCOG00000026987	POLR1A	100	87.232	Propithecus_coquereli
ENSSTOG00000012580	POLR1A	95	86.861	ENSPVAG00000012674	POLR1A	95	86.667	Pteropus_vampyrus
ENSSTOG00000012580	POLR1A	100	65.159	ENSPNYG00000000026	polr1a	99	65.558	Pundamilia_nyererei
ENSSTOG00000012580	POLR1A	100	66.182	ENSPNAG00000019223	polr1a	100	66.123	Pygocentrus_nattereri
ENSSTOG00000012580	POLR1A	100	87.005	ENSRNOG00000009545	Polr1a	100	86.946	Rattus_norvegicus
ENSSTOG00000012580	POLR1A	99	86.795	ENSRBIG00000028335	POLR1A	99	87.202	Rhinopithecus_bieti
ENSSTOG00000012580	POLR1A	99	86.736	ENSRROG00000031473	POLR1A	99	87.144	Rhinopithecus_roxellana
ENSSTOG00000012580	POLR1A	99	37.196	YOR341W	RPA190	99	37.056	Saccharomyces_cerevisiae
ENSSTOG00000012580	POLR1A	99	85.523	ENSSBOG00000030262	POLR1A	99	85.806	Saimiri_boliviensis_boliviensis
ENSSTOG00000012580	POLR1A	100	72.822	ENSSHAG00000014739	POLR1A	100	72.675	Sarcophilus_harrisii
ENSSTOG00000012580	POLR1A	100	66.299	ENSSFOG00015019716	polr1a	99	66.221	Scleropages_formosus
ENSSTOG00000012580	POLR1A	100	65.192	ENSSMAG00000014342	polr1a	99	65.129	Scophthalmus_maximus
ENSSTOG00000012580	POLR1A	99	66.570	ENSSDUG00000014631	polr1a	99	66.472	Seriola_dumerili
ENSSTOG00000012580	POLR1A	100	64.597	ENSSLDG00000024095	polr1a	99	64.407	Seriola_lalandi_dorsalis
ENSSTOG00000012580	POLR1A	74	95.745	ENSSARG00000003136	-	74	95.745	Sorex_araneus
ENSSTOG00000012580	POLR1A	100	69.598	ENSSPUG00000004215	POLR1A	98	76.923	Sphenodon_punctatus
ENSSTOG00000012580	POLR1A	64	71.687	ENSSPAG00000016341	polr1a	94	71.687	Stegastes_partitus
ENSSTOG00000012580	POLR1A	83	88.858	ENSSSCG00000008226	POLR1A	99	88.826	Sus_scrofa
ENSSTOG00000012580	POLR1A	99	70.095	ENSTGUG00000010704	POLR1A	100	70.154	Taeniopygia_guttata
ENSSTOG00000012580	POLR1A	99	63.663	ENSTRUG00000002210	polr1a	99	63.907	Takifugu_rubripes
ENSSTOG00000012580	POLR1A	100	59.527	ENSTNIG00000010116	polr1a	100	59.561	Tetraodon_nigroviridis
ENSSTOG00000012580	POLR1A	74	93.805	ENSTBEG00000008646	POLR1A	74	93.805	Tupaia_belangeri
ENSSTOG00000012580	POLR1A	100	83.421	ENSTTRG00000008597	POLR1A	100	83.178	Tursiops_truncatus
ENSSTOG00000012580	POLR1A	68	86.102	ENSUAMG00000012158	-	94	86.005	Ursus_americanus
ENSSTOG00000012580	POLR1A	100	86.504	ENSUMAG00000006700	POLR1A	97	89.809	Ursus_maritimus
ENSSTOG00000012580	POLR1A	100	87.093	ENSVVUG00000001245	POLR1A	100	86.736	Vulpes_vulpes
ENSSTOG00000012580	POLR1A	99	68.232	ENSXETG00000001952	polr1a	99	69.776	Xenopus_tropicalis
ENSSTOG00000012580	POLR1A	100	65.288	ENSXMAG00000004032	polr1a	99	65.344	Xiphophorus_maculatus