EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000013382 (Gene tree)
Gene ID: 101978401
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 216143 bases
Position: chrJH393371.1:178700-394842
Accession: 101978401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000029574	ResIII	PF04851.15	6.1e-08	1	1
ENSSTOP00000012003	ResIII	PF04851.15	6.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000013396	CHD6-201	11070	XM_013360568	ENSSTOP00000012003	2719 (aa)	XP_013216022	I3MKX5
ENSSTOT00000036110	CHD6-202	10950	XM_021729477	ENSSTOP00000029574	2679 (aa)	XP_021585152	A0A287D7R2
ENSSTOT00000040431	CHD6-203	651	-	ENSSTOP00000028725	216 (aa)	-	A0A287D5D5

Gene Model

Click here to download ENSSTOG00000013382's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000013382's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000013382	CHD6	61	63.062	ENSSTOG00000001854	CHD8	63	63.127
ENSSTOG00000013382	CHD6	73	69.000	ENSSTOG00000011949	CHD7	71	65.617
ENSSTOG00000013382	CHD6	79	62.556	ENSSTOG00000022273	CHD9	90	68.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000013382	CHD6	100	92.466	ENSG00000124177	CHD6	99	99.660	Homo_sapiens
ENSSTOG00000013382	CHD6	74	75.231	ENSAPOG00000013736	chd6	67	72.198	Acanthochromis_polyacanthus
ENSSTOG00000013382	CHD6	100	91.063	ENSAMEG00000009496	CHD6	100	91.063	Ailuropoda_melanoleuca
ENSSTOG00000013382	CHD6	74	75.381	ENSATEG00000005608	chd6	64	75.931	Anabas_testudineus
ENSSTOG00000013382	CHD6	99	71.340	ENSAPLG00000015592	CHD6	100	71.888	Anas_platyrhynchos
ENSSTOG00000013382	CHD6	91	76.304	ENSACAG00000006842	CHD6	90	77.368	Anolis_carolinensis
ENSSTOG00000013382	CHD6	100	92.062	ENSANAG00000037548	CHD6	99	93.394	Aotus_nancymaae
ENSSTOG00000013382	CHD6	77	73.913	ENSAMXG00000009576	chd6	77	69.631	Astyanax_mexicanus
ENSSTOG00000013382	CHD6	100	88.097	ENSBTAG00000005733	CHD6	100	88.097	Bos_taurus
ENSSTOG00000013382	CHD6	100	92.062	ENSCJAG00000017920	CHD6	99	93.211	Callithrix_jacchus
ENSSTOG00000013382	CHD6	100	91.063	ENSCAFG00000009236	CHD6	100	90.989	Canis_familiaris
ENSSTOG00000013382	CHD6	99	90.399	ENSCAFG00020012906	CHD6	99	97.232	Canis_lupus_dingo
ENSSTOG00000013382	CHD6	100	87.766	ENSCHIG00000017606	CHD6	100	87.766	Capra_hircus
ENSSTOG00000013382	CHD6	84	91.586	ENSTSYG00000014635	CHD6	100	91.586	Carlito_syrichta
ENSSTOG00000013382	CHD6	100	92.571	ENSCPOG00000015641	CHD6	100	92.571	Cavia_porcellus
ENSSTOG00000013382	CHD6	100	92.282	ENSCCAG00000036828	CHD6	99	93.394	Cebus_capucinus
ENSSTOG00000013382	CHD6	100	92.135	ENSCATG00000039248	CHD6	99	93.394	Cercocebus_atys
ENSSTOG00000013382	CHD6	100	92.000	ENSCLAG00000013743	CHD6	100	92.000	Chinchilla_lanigera
ENSSTOG00000013382	CHD6	100	92.319	ENSCSAG00000013997	CHD6	100	92.319	Chlorocebus_sabaeus
ENSSTOG00000013382	CHD6	91	89.526	ENSCHOG00000012647	CHD6	95	89.526	Choloepus_hoffmanni
ENSSTOG00000013382	CHD6	99	72.758	ENSCPBG00000019382	CHD6	99	73.156	Chrysemys_picta_bellii
ENSSTOG00000013382	CHD6	100	92.209	ENSCANG00000043435	CHD6	99	93.394	Colobus_angolensis_palliatus
ENSSTOG00000013382	CHD6	100	90.695	ENSCGRG00001002694	Chd6	100	90.695	Cricetulus_griseus_chok1gshd
ENSSTOG00000013382	CHD6	82	73.589	ENSDARG00000017244	chd6	79	73.482	Danio_rerio
ENSSTOG00000013382	CHD6	99	89.819	ENSDNOG00000004176	CHD6	99	89.819	Dasypus_novemcinctus
ENSSTOG00000013382	CHD6	99	91.124	ENSEASG00005023433	CHD6	95	97.683	Equus_asinus_asinus
ENSSTOG00000013382	CHD6	99	91.866	ENSECAG00000011761	CHD6	100	91.866	Equus_caballus
ENSSTOG00000013382	CHD6	70	79.893	ENSELUG00000012309	chd6	88	79.893	Esox_lucius
ENSSTOG00000013382	CHD6	100	91.394	ENSFCAG00000003572	CHD6	100	91.394	Felis_catus
ENSSTOG00000013382	CHD6	100	71.732	ENSFALG00000012563	CHD6	99	70.790	Ficedula_albicollis
ENSSTOG00000013382	CHD6	99	92.804	ENSFDAG00000013791	CHD6	99	92.804	Fukomys_damarensis
ENSSTOG00000013382	CHD6	73	69.478	ENSGMOG00000011715	chd6	85	69.621	Gadus_morhua
ENSSTOG00000013382	CHD6	78	69.846	ENSGACG00000000037	chd6	91	64.963	Gasterosteus_aculeatus
ENSSTOG00000013382	CHD6	100	92.393	ENSGGOG00000013123	CHD6	99	93.394	Gorilla_gorilla
ENSSTOG00000013382	CHD6	77	72.028	ENSHBUG00000014701	chd6	64	74.012	Haplochromis_burtoni
ENSSTOG00000013382	CHD6	100	92.868	ENSHGLG00000004548	CHD6	100	92.904	Heterocephalus_glaber_female
ENSSTOG00000013382	CHD6	100	92.868	ENSHGLG00100006401	CHD6	100	92.904	Heterocephalus_glaber_male
ENSSTOG00000013382	CHD6	80	76.272	ENSIPUG00000003692	chd6	73	76.882	Ictalurus_punctatus
ENSSTOG00000013382	CHD6	91	72.284	ENSLACG00000010881	CHD6	90	72.169	Latimeria_chalumnae
ENSSTOG00000013382	CHD6	73	80.109	ENSLOCG00000007386	chd6	85	75.785	Lepisosteus_oculatus
ENSSTOG00000013382	CHD6	100	90.993	ENSLAFG00000012144	CHD6	100	90.993	Loxodonta_africana
ENSSTOG00000013382	CHD6	100	92.393	ENSMFAG00000032830	CHD6	99	93.394	Macaca_fascicularis
ENSSTOG00000013382	CHD6	100	92.393	ENSMMUG00000020458	CHD6	99	93.394	Macaca_mulatta
ENSSTOG00000013382	CHD6	100	92.393	ENSMNEG00000040847	CHD6	99	93.394	Macaca_nemestrina
ENSSTOG00000013382	CHD6	99	92.362	ENSMLEG00000031965	CHD6	99	93.394	Mandrillus_leucophaeus
ENSSTOG00000013382	CHD6	76	73.172	ENSMAMG00000013111	chd6	64	74.382	Mastacembelus_armatus
ENSSTOG00000013382	CHD6	99	70.698	ENSMGAG00000001121	CHD6	100	71.622	Meleagris_gallopavo
ENSSTOG00000013382	CHD6	99	92.430	ENSMICG00000016641	CHD6	99	93.028	Microcebus_murinus
ENSSTOG00000013382	CHD6	89	80.165	ENSMODG00000000720	-	99	80.339	Monodelphis_domestica
ENSSTOG00000013382	CHD6	100	89.003	MGP_CAROLIEiJ_G0024604	Chd6	100	94.346	Mus_caroli
ENSSTOG00000013382	CHD6	100	89.261	ENSMUSG00000057133	Chd6	100	94.262	Mus_musculus
ENSSTOG00000013382	CHD6	100	89.150	MGP_PahariEiJ_G0026048	Chd6	100	94.684	Mus_pahari
ENSSTOG00000013382	CHD6	100	89.224	MGP_SPRETEiJ_G0025526	Chd6	100	94.346	Mus_spretus
ENSSTOG00000013382	CHD6	100	89.875	ENSMPUG00000017695	CHD6	100	89.839	Mustela_putorius_furo
ENSSTOG00000013382	CHD6	100	90.474	ENSMLUG00000016247	CHD6	100	90.474	Myotis_lucifugus
ENSSTOG00000013382	CHD6	78	73.303	ENSNBRG00000013839	chd6	79	71.492	Neolamprologus_brichardi
ENSSTOG00000013382	CHD6	100	90.746	ENSNLEG00000006496	CHD6	99	91.070	Nomascus_leucogenys
ENSSTOG00000013382	CHD6	100	87.348	ENSOPRG00000013376	-	100	87.348	Ochotona_princeps
ENSSTOG00000013382	CHD6	82	75.904	ENSONIG00000000393	chd6	83	75.291	Oreochromis_niloticus
ENSSTOG00000013382	CHD6	100	70.179	ENSOANG00000014347	CHD6	99	70.387	Ornithorhynchus_anatinus
ENSSTOG00000013382	CHD6	99	90.063	ENSOCUG00000012394	CHD6	100	90.063	Oryctolagus_cuniculus
ENSSTOG00000013382	CHD6	76	70.992	ENSORLG00020021891	chd6	95	85.972	Oryzias_latipes_hni
ENSSTOG00000013382	CHD6	99	90.677	ENSOGAG00000002427	CHD6	100	90.474	Otolemur_garnettii
ENSSTOG00000013382	CHD6	99	85.735	ENSOARG00000002597	CHD6	100	85.735	Ovis_aries
ENSSTOG00000013382	CHD6	100	91.541	ENSPPRG00000014756	CHD6	100	91.541	Panthera_pardus
ENSSTOG00000013382	CHD6	100	91.431	ENSPTIG00000011094	CHD6	100	91.431	Panthera_tigris_altaica
ENSSTOG00000013382	CHD6	100	92.503	ENSPTRG00000013504	CHD6	100	92.503	Pan_troglodytes
ENSSTOG00000013382	CHD6	100	92.429	ENSPANG00000025554	CHD6	99	93.578	Papio_anubis
ENSSTOG00000013382	CHD6	77	76.225	ENSPKIG00000005578	chd6	78	73.259	Paramormyrops_kingsleyae
ENSSTOG00000013382	CHD6	77	76.529	ENSPMGG00000014877	chd6	84	75.482	Periophthalmus_magnuspinnatus
ENSSTOG00000013382	CHD6	100	79.604	ENSPCIG00000028037	CHD6	100	80.119	Phascolarctos_cinereus
ENSSTOG00000013382	CHD6	72	71.598	ENSPLAG00000003128	chd6	68	73.089	Poecilia_latipinna
ENSSTOG00000013382	CHD6	69	74.130	ENSPREG00000022653	chd6	99	86.447	Poecilia_reticulata
ENSSTOG00000013382	CHD6	100	92.579	ENSPPYG00000011016	CHD6	100	92.579	Pongo_abelii
ENSSTOG00000013382	CHD6	99	92.047	ENSPCOG00000001089	CHD6	99	93.211	Propithecus_coquereli
ENSSTOG00000013382	CHD6	78	74.919	ENSPNYG00000022516	chd6	79	73.624	Pundamilia_nyererei
ENSSTOG00000013382	CHD6	79	73.535	ENSPNAG00000012825	chd6	76	74.277	Pygocentrus_nattereri
ENSSTOG00000013382	CHD6	100	88.746	ENSRNOG00000016744	Chd6	100	88.672	Rattus_norvegicus
ENSSTOG00000013382	CHD6	100	92.393	ENSSBOG00000022089	CHD6	99	93.394	Saimiri_boliviensis_boliviensis
ENSSTOG00000013382	CHD6	100	79.127	ENSSHAG00000017072	CHD6	100	79.640	Sarcophilus_harrisii
ENSSTOG00000013382	CHD6	78	76.203	ENSSFOG00015012920	chd6	77	75.032	Scleropages_formosus
ENSSTOG00000013382	CHD6	58	100.000	ENSSARG00000002615	-	61	100.000	Sorex_araneus
ENSSTOG00000013382	CHD6	100	90.368	ENSSSCG00000007360	CHD6	100	91.282	Sus_scrofa
ENSSTOG00000013382	CHD6	97	72.941	ENSTGUG00000003179	CHD6	99	73.245	Taeniopygia_guttata
ENSSTOG00000013382	CHD6	75	77.516	ENSTNIG00000017487	chd6	86	77.516	Tetraodon_nigroviridis
ENSSTOG00000013382	CHD6	100	87.399	ENSTTRG00000013438	CHD6	100	87.399	Tursiops_truncatus
ENSSTOG00000013382	CHD6	99	89.956	ENSUAMG00000024036	CHD6	95	96.139	Ursus_americanus
ENSSTOG00000013382	CHD6	99	91.393	ENSUMAG00000002017	CHD6	95	96.139	Ursus_maritimus
ENSSTOG00000013382	CHD6	94	89.254	ENSVPAG00000007941	CHD6	96	89.322	Vicugna_pacos
ENSSTOG00000013382	CHD6	100	91.173	ENSVVUG00000029164	CHD6	100	91.173	Vulpes_vulpes
ENSSTOG00000013382	CHD6	100	60.421	ENSXETG00000021445	chd6	100	61.055	Xenopus_tropicalis