EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000013552 (Gene tree)
Gene ID: 101975785
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 109936 bases
Position: chrJH393350.1:3963387-4073322
Accession: 101975785
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000031305	XRN_N	PF03159.18	1.6e-96	1	1
ENSSTOP00000012156	XRN_N	PF03159.18	2.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000032262	XRN1-202	2907	-	ENSSTOP00000031305	968 (aa)	-	A0A287DCK8
ENSSTOT00000013567	XRN1-201	5196	XM_005328037	ENSSTOP00000012156	1731 (aa)	XP_005328094	I3ML90

Gene Model

Click here to download ENSSTOG00000013552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000013552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000013552	XRN1	61	39.354	ENSSTOG00000000589	XRN2	71	39.592

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000013552	XRN1	99	97.306	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSSTOG00000013552	XRN1	99	77.937	ENSAPOG00000000622	xrn1	100	70.285	Acanthochromis_polyacanthus
ENSSTOG00000013552	XRN1	99	97.329	ENSAMEG00000012538	XRN1	100	93.203	Ailuropoda_melanoleuca
ENSSTOG00000013552	XRN1	99	77.655	ENSACIG00000001057	xrn1	98	72.801	Amphilophus_citrinellus
ENSSTOG00000013552	XRN1	99	78.060	ENSAOCG00000014097	xrn1	98	71.338	Amphiprion_ocellaris
ENSSTOG00000013552	XRN1	99	78.060	ENSAPEG00000006620	xrn1	91	72.654	Amphiprion_percula
ENSSTOG00000013552	XRN1	99	75.637	ENSATEG00000009752	xrn1	99	71.168	Anabas_testudineus
ENSSTOG00000013552	XRN1	97	88.742	ENSAPLG00000004905	XRN1	100	76.825	Anas_platyrhynchos
ENSSTOG00000013552	XRN1	99	85.556	ENSACAG00000004985	XRN1	100	72.947	Anolis_carolinensis
ENSSTOG00000013552	XRN1	99	97.933	ENSANAG00000029013	XRN1	99	96.734	Aotus_nancymaae
ENSSTOG00000013552	XRN1	99	76.862	ENSACLG00000004806	xrn1	97	60.932	Astatotilapia_calliptera
ENSSTOG00000013552	XRN1	99	73.968	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSSTOG00000013552	XRN1	99	96.707	ENSBTAG00000011524	XRN1	100	89.628	Bos_taurus
ENSSTOG00000013552	XRN1	93	52.932	WBGene00012730	xrn-1	83	37.979	Caenorhabditis_elegans
ENSSTOG00000013552	XRN1	99	97.306	ENSCJAG00000001872	XRN1	100	91.339	Callithrix_jacchus
ENSSTOG00000013552	XRN1	99	98.204	ENSCAFG00000007783	XRN1	100	93.707	Canis_familiaris
ENSSTOG00000013552	XRN1	99	98.204	ENSCAFG00020009120	XRN1	99	95.562	Canis_lupus_dingo
ENSSTOG00000013552	XRN1	99	96.707	ENSCHIG00000019192	XRN1	99	91.792	Capra_hircus
ENSSTOG00000013552	XRN1	99	97.147	ENSTSYG00000002705	XRN1	100	91.859	Carlito_syrichta
ENSSTOG00000013552	XRN1	97	73.489	ENSCAPG00000004604	-	99	77.114	Cavia_aperea
ENSSTOG00000013552	XRN1	99	97.940	ENSCCAG00000034800	XRN1	99	97.940	Cebus_capucinus
ENSSTOG00000013552	XRN1	99	97.781	ENSCATG00000041794	XRN1	100	91.917	Cercocebus_atys
ENSSTOG00000013552	XRN1	99	96.355	ENSCLAG00000001451	XRN1	99	96.355	Chinchilla_lanigera
ENSSTOG00000013552	XRN1	99	97.781	ENSCSAG00000011265	XRN1	100	91.232	Chlorocebus_sabaeus
ENSSTOG00000013552	XRN1	60	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSSTOG00000013552	XRN1	84	61.395	ENSCSAVG00000008584	-	98	45.192	Ciona_savignyi
ENSSTOG00000013552	XRN1	99	97.781	ENSCANG00000037495	XRN1	99	97.781	Colobus_angolensis_palliatus
ENSSTOG00000013552	XRN1	99	96.355	ENSCGRG00001019411	Xrn1	99	96.355	Cricetulus_griseus_chok1gshd
ENSSTOG00000013552	XRN1	99	96.355	ENSCGRG00000012464	Xrn1	99	96.355	Cricetulus_griseus_crigri
ENSSTOG00000013552	XRN1	99	77.937	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSSTOG00000013552	XRN1	99	76.312	ENSCVAG00000013089	xrn1	99	72.487	Cyprinodon_variegatus
ENSSTOG00000013552	XRN1	99	78.922	ENSDARG00000091652	xrn1	98	79.536	Danio_rerio
ENSSTOG00000013552	XRN1	99	96.184	ENSDORG00000013833	Xrn1	100	88.154	Dipodomys_ordii
ENSSTOG00000013552	XRN1	97	53.280	FBgn0020261	pcm	76	39.923	Drosophila_melanogaster
ENSSTOG00000013552	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSSTOG00000013552	XRN1	99	97.147	ENSEASG00005002687	XRN1	99	97.147	Equus_asinus_asinus
ENSSTOG00000013552	XRN1	99	97.305	ENSECAG00000008301	XRN1	100	90.086	Equus_caballus
ENSSTOG00000013552	XRN1	84	97.023	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSSTOG00000013552	XRN1	99	78.639	ENSELUG00000000169	xrn1	100	61.655	Esox_lucius
ENSSTOG00000013552	XRN1	99	95.509	ENSFCAG00000027589	XRN1	99	96.703	Felis_catus
ENSSTOG00000013552	XRN1	99	88.235	ENSFALG00000007021	XRN1	100	74.986	Ficedula_albicollis
ENSSTOG00000013552	XRN1	99	96.096	ENSFDAG00000020494	XRN1	99	96.066	Fukomys_damarensis
ENSSTOG00000013552	XRN1	50	70.270	ENSFHEG00000017356	-	98	70.270	Fundulus_heteroclitus
ENSSTOG00000013552	XRN1	99	76.630	ENSGMOG00000006396	xrn1	80	68.117	Gadus_morhua
ENSSTOG00000013552	XRN1	99	88.712	ENSGALG00000002706	XRN1	100	75.548	Gallus_gallus
ENSSTOG00000013552	XRN1	99	76.341	ENSGACG00000014328	xrn1	100	60.350	Gasterosteus_aculeatus
ENSSTOG00000013552	XRN1	99	88.024	ENSGAGG00000017535	XRN1	99	79.024	Gopherus_agassizii
ENSSTOG00000013552	XRN1	99	97.147	ENSGGOG00000008047	XRN1	100	91.513	Gorilla_gorilla
ENSSTOG00000013552	XRN1	99	75.119	ENSHBUG00000005908	xrn1	98	72.541	Haplochromis_burtoni
ENSSTOG00000013552	XRN1	99	96.791	ENSHGLG00000014476	XRN1	99	96.791	Heterocephalus_glaber_female
ENSSTOG00000013552	XRN1	99	96.791	ENSHGLG00100015130	XRN1	99	96.791	Heterocephalus_glaber_male
ENSSTOG00000013552	XRN1	99	75.076	ENSHCOG00000014062	xrn1	97	69.844	Hippocampus_comes
ENSSTOG00000013552	XRN1	99	78.730	ENSIPUG00000015229	xrn1	97	63.294	Ictalurus_punctatus
ENSSTOG00000013552	XRN1	97	95.127	ENSJJAG00000010863	Xrn1	100	95.127	Jaculus_jaculus
ENSSTOG00000013552	XRN1	99	77.990	ENSKMAG00000021356	xrn1	94	76.211	Kryptolebias_marmoratus
ENSSTOG00000013552	XRN1	99	77.424	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSSTOG00000013552	XRN1	99	83.810	ENSLACG00000009020	XRN1	100	69.327	Latimeria_chalumnae
ENSSTOG00000013552	XRN1	99	82.148	ENSLOCG00000007944	xrn1	100	64.889	Lepisosteus_oculatus
ENSSTOG00000013552	XRN1	99	97.297	ENSLAFG00000015426	XRN1	100	96.913	Loxodonta_africana
ENSSTOG00000013552	XRN1	99	97.940	ENSMFAG00000032599	XRN1	100	91.975	Macaca_fascicularis
ENSSTOG00000013552	XRN1	99	97.781	ENSMMUG00000014038	XRN1	100	91.917	Macaca_mulatta
ENSSTOG00000013552	XRN1	99	97.464	ENSMNEG00000034217	XRN1	100	91.686	Macaca_nemestrina
ENSSTOG00000013552	XRN1	99	78.323	ENSMAMG00000013219	xrn1	94	76.434	Mastacembelus_armatus
ENSSTOG00000013552	XRN1	99	76.704	ENSMZEG00005015099	xrn1	97	60.852	Maylandia_zebra
ENSSTOG00000013552	XRN1	97	84.488	ENSMGAG00000006333	XRN1	100	75.696	Meleagris_gallopavo
ENSSTOG00000013552	XRN1	99	96.830	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSSTOG00000013552	XRN1	99	95.109	ENSMOCG00000008665	Xrn1	99	95.109	Microtus_ochrogaster
ENSSTOG00000013552	XRN1	54	68.081	ENSMMOG00000020896	-	96	67.897	Mola_mola
ENSSTOG00000013552	XRN1	99	89.490	ENSMODG00000021236	XRN1	100	79.497	Monodelphis_domestica
ENSSTOG00000013552	XRN1	99	71.111	ENSMALG00000004098	xrn1	98	66.875	Monopterus_albus
ENSSTOG00000013552	XRN1	99	95.549	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSSTOG00000013552	XRN1	99	95.880	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSSTOG00000013552	XRN1	99	96.197	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSSTOG00000013552	XRN1	99	95.880	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSSTOG00000013552	XRN1	99	98.204	ENSMPUG00000012040	XRN1	100	90.831	Mustela_putorius_furo
ENSSTOG00000013552	XRN1	99	96.502	ENSMLUG00000016885	XRN1	100	90.537	Myotis_lucifugus
ENSSTOG00000013552	XRN1	99	93.154	ENSNGAG00000023964	Xrn1	100	93.154	Nannospalax_galili
ENSSTOG00000013552	XRN1	99	97.781	ENSNLEG00000004726	XRN1	100	91.686	Nomascus_leucogenys
ENSSTOG00000013552	XRN1	71	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSSTOG00000013552	XRN1	74	94.565	ENSOPRG00000007337	-	78	84.960	Ochotona_princeps
ENSSTOG00000013552	XRN1	99	77.778	ENSONIG00000016673	xrn1	99	64.073	Oreochromis_niloticus
ENSSTOG00000013552	XRN1	86	87.903	ENSOANG00000006735	XRN1	100	76.244	Ornithorhynchus_anatinus
ENSSTOG00000013552	XRN1	99	96.830	ENSOCUG00000001861	XRN1	100	91.227	Oryctolagus_cuniculus
ENSSTOG00000013552	XRN1	99	78.549	ENSORLG00000013005	xrn1	97	72.378	Oryzias_latipes
ENSSTOG00000013552	XRN1	99	79.206	ENSORLG00020005559	xrn1	97	72.400	Oryzias_latipes_hni
ENSSTOG00000013552	XRN1	99	78.730	ENSORLG00015022523	xrn1	89	72.218	Oryzias_latipes_hsok
ENSSTOG00000013552	XRN1	99	78.006	ENSOMEG00000015397	xrn1	99	72.861	Oryzias_melastigma
ENSSTOG00000013552	XRN1	99	92.857	ENSOGAG00000000170	XRN1	100	88.080	Otolemur_garnettii
ENSSTOG00000013552	XRN1	99	96.707	ENSOARG00000006343	XRN1	99	91.681	Ovis_aries
ENSSTOG00000013552	XRN1	99	96.989	ENSPPAG00000010180	XRN1	100	91.397	Pan_paniscus
ENSSTOG00000013552	XRN1	99	97.305	ENSPPRG00000007125	XRN1	100	91.518	Panthera_pardus
ENSSTOG00000013552	XRN1	99	97.305	ENSPTIG00000021081	XRN1	100	91.518	Panthera_tigris_altaica
ENSSTOG00000013552	XRN1	99	96.989	ENSPTRG00000015482	XRN1	100	91.397	Pan_troglodytes
ENSSTOG00000013552	XRN1	99	97.781	ENSPANG00000010638	XRN1	100	91.801	Papio_anubis
ENSSTOG00000013552	XRN1	99	87.797	ENSPSIG00000018050	XRN1	100	77.784	Pelodiscus_sinensis
ENSSTOG00000013552	XRN1	99	74.380	ENSPMGG00000002648	xrn1	98	77.865	Periophthalmus_magnuspinnatus
ENSSTOG00000013552	XRN1	99	95.346	ENSPEMG00000020610	Xrn1	99	96.197	Peromyscus_maniculatus_bairdii
ENSSTOG00000013552	XRN1	93	55.675	ENSPMAG00000002975	xrn1	91	78.736	Petromyzon_marinus
ENSSTOG00000013552	XRN1	99	89.948	ENSPCIG00000028735	XRN1	99	90.106	Phascolarctos_cinereus
ENSSTOG00000013552	XRN1	99	77.638	ENSPFOG00000013932	xrn1	99	63.711	Poecilia_formosa
ENSSTOG00000013552	XRN1	99	77.778	ENSPLAG00000021653	xrn1	99	63.331	Poecilia_latipinna
ENSSTOG00000013552	XRN1	99	77.567	ENSPMEG00000003076	xrn1	95	63.878	Poecilia_mexicana
ENSSTOG00000013552	XRN1	99	77.287	ENSPREG00000021147	xrn1	99	69.953	Poecilia_reticulata
ENSSTOG00000013552	XRN1	99	97.623	ENSPPYG00000014172	XRN1	100	90.774	Pongo_abelii
ENSSTOG00000013552	XRN1	92	95.055	ENSPCAG00000005638	XRN1	96	82.016	Procavia_capensis
ENSSTOG00000013552	XRN1	99	97.456	ENSPCOG00000013089	XRN1	99	97.412	Propithecus_coquereli
ENSSTOG00000013552	XRN1	99	95.783	ENSPVAG00000016265	XRN1	96	92.461	Pteropus_vampyrus
ENSSTOG00000013552	XRN1	99	77.021	ENSPNYG00000010570	xrn1	94	71.576	Pundamilia_nyererei
ENSSTOG00000013552	XRN1	99	75.987	ENSPNAG00000023531	xrn1	97	60.986	Pygocentrus_nattereri
ENSSTOG00000013552	XRN1	99	95.404	ENSRNOG00000042951	Xrn1	100	89.145	Rattus_norvegicus
ENSSTOG00000013552	XRN1	99	97.306	ENSRBIG00000041227	XRN1	100	90.993	Rhinopithecus_bieti
ENSSTOG00000013552	XRN1	93	41.313	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSSTOG00000013552	XRN1	99	97.623	ENSSBOG00000029561	XRN1	100	91.339	Saimiri_boliviensis_boliviensis
ENSSTOG00000013552	XRN1	97	89.439	ENSSHAG00000016207	XRN1	100	80.675	Sarcophilus_harrisii
ENSSTOG00000013552	XRN1	99	78.378	ENSSFOG00015024211	xrn1	96	63.054	Scleropages_formosus
ENSSTOG00000013552	XRN1	99	79.239	ENSSMAG00000016534	xrn1	97	71.158	Scophthalmus_maximus
ENSSTOG00000013552	XRN1	99	78.889	ENSSDUG00000010306	xrn1	97	72.557	Seriola_dumerili
ENSSTOG00000013552	XRN1	99	78.889	ENSSLDG00000021543	xrn1	100	71.975	Seriola_lalandi_dorsalis
ENSSTOG00000013552	XRN1	89	92.715	ENSSARG00000007741	-	81	85.847	Sorex_araneus
ENSSTOG00000013552	XRN1	50	76.065	ENSSPAG00000009856	-	96	76.268	Stegastes_partitus
ENSSTOG00000013552	XRN1	99	88.235	ENSTGUG00000008498	XRN1	100	76.444	Taeniopygia_guttata
ENSSTOG00000013552	XRN1	99	77.316	ENSTRUG00000004895	xrn1	96	76.409	Takifugu_rubripes
ENSSTOG00000013552	XRN1	97	76.442	ENSTNIG00000017615	xrn1	98	58.537	Tetraodon_nigroviridis
ENSSTOG00000013552	XRN1	99	87.400	ENSTBEG00000003256	XRN1	84	97.574	Tupaia_belangeri
ENSSTOG00000013552	XRN1	99	96.988	ENSTTRG00000012914	XRN1	100	86.017	Tursiops_truncatus
ENSSTOG00000013552	XRN1	99	98.204	ENSUAMG00000001608	XRN1	99	94.571	Ursus_americanus
ENSSTOG00000013552	XRN1	99	98.204	ENSUMAG00000013625	XRN1	100	94.114	Ursus_maritimus
ENSSTOG00000013552	XRN1	99	96.830	ENSVPAG00000004690	XRN1	100	87.564	Vicugna_pacos
ENSSTOG00000013552	XRN1	99	98.204	ENSVVUG00000024461	XRN1	99	98.033	Vulpes_vulpes
ENSSTOG00000013552	XRN1	99	83.412	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSSTOG00000013552	XRN1	99	77.107	ENSXCOG00000007917	xrn1	97	72.535	Xiphophorus_couchianus
ENSSTOG00000013552	XRN1	99	76.948	ENSXMAG00000018320	xrn1	98	72.186	Xiphophorus_maculatus