EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000013892 (Gene tree)
Gene ID: 101975672
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 22972 bases
Position: chrJH393714.1:309713-332684
Accession: 101975672
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000012448	PRP21_like_P	PF12230.8	8.9e-52	1	1
ENSSTOP00000012448	Surp	PF01805.20	6e-46	1	2
ENSSTOP00000012448	Surp	PF01805.20	6e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000013895	SF3A1-201	7196	XM_005341887	ENSSTOP00000012448	793 (aa)	XP_005341944	I3MLW4

Gene Model

Click here to download ENSSTOG00000013892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000013892's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000013892	SF3A1	100	98.865	ENSG00000099995	SF3A1	100	98.865	Homo_sapiens
ENSSTOG00000013892	SF3A1	100	83.648	ENSAPOG00000020465	sf3a1	97	86.013	Acanthochromis_polyacanthus
ENSSTOG00000013892	SF3A1	100	98.616	ENSAMEG00000007737	SF3A1	100	98.616	Ailuropoda_melanoleuca
ENSSTOG00000013892	SF3A1	100	84.654	ENSACIG00000020672	sf3a1	99	85.038	Amphilophus_citrinellus
ENSSTOG00000013892	SF3A1	100	83.522	ENSAOCG00000003060	sf3a1	97	86.013	Amphiprion_ocellaris
ENSSTOG00000013892	SF3A1	100	83.648	ENSAPEG00000010735	sf3a1	97	86.144	Amphiprion_percula
ENSSTOG00000013892	SF3A1	96	85.807	ENSATEG00000021201	sf3a1	97	85.938	Anabas_testudineus
ENSSTOG00000013892	SF3A1	95	94.320	ENSAPLG00000009057	SF3A1	99	93.419	Anas_platyrhynchos
ENSSTOG00000013892	SF3A1	100	85.837	ENSACAG00000009415	SF3A1	100	87.192	Anolis_carolinensis
ENSSTOG00000013892	SF3A1	100	99.117	ENSANAG00000032045	SF3A1	100	99.117	Aotus_nancymaae
ENSSTOG00000013892	SF3A1	100	84.635	ENSACLG00000012622	sf3a1	99	85.275	Astatotilapia_calliptera
ENSSTOG00000013892	SF3A1	99	83.312	ENSAMXG00000005382	sf3a1	98	85.195	Astyanax_mexicanus
ENSSTOG00000013892	SF3A1	100	99.369	ENSBTAG00000003390	SF3A1	100	99.369	Bos_taurus
ENSSTOG00000013892	SF3A1	84	43.447	WBGene00004188	prp-21	94	43.502	Caenorhabditis_elegans
ENSSTOG00000013892	SF3A1	100	99.243	ENSCJAG00000010370	SF3A1	100	99.243	Callithrix_jacchus
ENSSTOG00000013892	SF3A1	100	99.117	ENSCAFG00000012559	SF3A1	100	99.117	Canis_familiaris
ENSSTOG00000013892	SF3A1	100	99.117	ENSCAFG00020000838	SF3A1	100	99.117	Canis_lupus_dingo
ENSSTOG00000013892	SF3A1	100	99.243	ENSCHIG00000018642	SF3A1	100	99.243	Capra_hircus
ENSSTOG00000013892	SF3A1	100	99.496	ENSTSYG00000004739	SF3A1	100	99.496	Carlito_syrichta
ENSSTOG00000013892	SF3A1	94	81.442	ENSCAPG00000015414	SF3A1	98	81.442	Cavia_aperea
ENSSTOG00000013892	SF3A1	100	99.117	ENSCPOG00000014589	SF3A1	100	99.117	Cavia_porcellus
ENSSTOG00000013892	SF3A1	100	99.117	ENSCCAG00000032006	SF3A1	100	99.117	Cebus_capucinus
ENSSTOG00000013892	SF3A1	100	99.243	ENSCATG00000029241	SF3A1	100	99.243	Cercocebus_atys
ENSSTOG00000013892	SF3A1	100	98.613	ENSCLAG00000006508	SF3A1	100	98.613	Chinchilla_lanigera
ENSSTOG00000013892	SF3A1	100	99.117	ENSCSAG00000009470	SF3A1	100	99.117	Chlorocebus_sabaeus
ENSSTOG00000013892	SF3A1	61	99.083	ENSCHOG00000005201	SF3A1	69	99.083	Choloepus_hoffmanni
ENSSTOG00000013892	SF3A1	100	91.184	ENSCPBG00000007595	SF3A1	100	91.310	Chrysemys_picta_bellii
ENSSTOG00000013892	SF3A1	97	52.448	ENSCING00000008526	-	66	57.905	Ciona_intestinalis
ENSSTOG00000013892	SF3A1	97	51.003	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSSTOG00000013892	SF3A1	100	99.117	ENSCANG00000033564	SF3A1	100	99.117	Colobus_angolensis_palliatus
ENSSTOG00000013892	SF3A1	100	98.739	ENSCGRG00001008933	Sf3a1	100	98.739	Cricetulus_griseus_chok1gshd
ENSSTOG00000013892	SF3A1	100	98.739	ENSCGRG00000006127	Sf3a1	100	98.739	Cricetulus_griseus_crigri
ENSSTOG00000013892	SF3A1	100	82.035	ENSCSEG00000010792	sf3a1	97	83.420	Cynoglossus_semilaevis
ENSSTOG00000013892	SF3A1	100	83.019	ENSCVAG00000004560	sf3a1	97	84.224	Cyprinodon_variegatus
ENSSTOG00000013892	SF3A1	100	82.412	ENSDARG00000041887	sf3a1	97	84.746	Danio_rerio
ENSSTOG00000013892	SF3A1	100	98.742	ENSDNOG00000010629	SF3A1	100	98.742	Dasypus_novemcinctus
ENSSTOG00000013892	SF3A1	100	99.496	ENSDORG00000005613	Sf3a1	100	99.496	Dipodomys_ordii
ENSSTOG00000013892	SF3A1	79	61.495	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSSTOG00000013892	SF3A1	89	96.154	ENSETEG00000017194	SF3A1	100	96.154	Echinops_telfairi
ENSSTOG00000013892	SF3A1	98	66.102	ENSEBUG00000001285	sf3a1	96	67.284	Eptatretus_burgeri
ENSSTOG00000013892	SF3A1	100	99.496	ENSEASG00005010254	SF3A1	100	99.496	Equus_asinus_asinus
ENSSTOG00000013892	SF3A1	100	99.496	ENSECAG00000023962	SF3A1	100	99.496	Equus_caballus
ENSSTOG00000013892	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSSTOG00000013892	SF3A1	100	82.581	ENSELUG00000022578	sf3a1	98	83.355	Esox_lucius
ENSSTOG00000013892	SF3A1	100	99.369	ENSFCAG00000011932	SF3A1	100	99.369	Felis_catus
ENSSTOG00000013892	SF3A1	95	93.386	ENSFALG00000006944	SF3A1	100	91.940	Ficedula_albicollis
ENSSTOG00000013892	SF3A1	100	99.243	ENSFDAG00000009560	SF3A1	100	99.243	Fukomys_damarensis
ENSSTOG00000013892	SF3A1	100	84.151	ENSFHEG00000010866	sf3a1	97	85.528	Fundulus_heteroclitus
ENSSTOG00000013892	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	99	80.485	Gadus_morhua
ENSSTOG00000013892	SF3A1	95	94.312	ENSGALG00000007937	SF3A1	100	92.443	Gallus_gallus
ENSSTOG00000013892	SF3A1	100	83.522	ENSGAFG00000009111	sf3a1	97	84.706	Gambusia_affinis
ENSSTOG00000013892	SF3A1	100	82.494	ENSGACG00000011893	sf3a1	97	83.355	Gasterosteus_aculeatus
ENSSTOG00000013892	SF3A1	96	91.327	ENSGAGG00000000762	SF3A1	99	91.459	Gopherus_agassizii
ENSSTOG00000013892	SF3A1	100	98.865	ENSGGOG00000012631	SF3A1	100	98.865	Gorilla_gorilla
ENSSTOG00000013892	SF3A1	100	84.635	ENSHBUG00000015795	sf3a1	99	85.275	Haplochromis_burtoni
ENSSTOG00000013892	SF3A1	100	99.496	ENSHGLG00000007907	SF3A1	100	99.496	Heterocephalus_glaber_female
ENSSTOG00000013892	SF3A1	100	99.496	ENSHGLG00100013799	SF3A1	100	99.496	Heterocephalus_glaber_male
ENSSTOG00000013892	SF3A1	100	80.252	ENSHCOG00000015423	sf3a1	99	80.645	Hippocampus_comes
ENSSTOG00000013892	SF3A1	96	82.552	ENSIPUG00000002470	sf3a1	98	82.812	Ictalurus_punctatus
ENSSTOG00000013892	SF3A1	100	99.244	ENSJJAG00000022566	Sf3a1	100	99.244	Jaculus_jaculus
ENSSTOG00000013892	SF3A1	100	83.145	ENSKMAG00000002400	sf3a1	98	84.876	Kryptolebias_marmoratus
ENSSTOG00000013892	SF3A1	100	82.767	ENSLBEG00000022974	sf3a1	97	84.052	Labrus_bergylta
ENSSTOG00000013892	SF3A1	100	86.859	ENSLACG00000003565	SF3A1	99	87.229	Latimeria_chalumnae
ENSSTOG00000013892	SF3A1	100	85.213	ENSLOCG00000008251	sf3a1	97	87.013	Lepisosteus_oculatus
ENSSTOG00000013892	SF3A1	98	62.166	ENSLAFG00000026032	-	98	62.166	Loxodonta_africana
ENSSTOG00000013892	SF3A1	100	98.865	ENSLAFG00000000448	SF3A1	100	98.865	Loxodonta_africana
ENSSTOG00000013892	SF3A1	100	98.991	ENSMFAG00000031979	SF3A1	100	98.991	Macaca_fascicularis
ENSSTOG00000013892	SF3A1	100	98.991	ENSMMUG00000005547	SF3A1	100	98.991	Macaca_mulatta
ENSSTOG00000013892	SF3A1	100	98.865	ENSMNEG00000037229	SF3A1	100	98.865	Macaca_nemestrina
ENSSTOG00000013892	SF3A1	100	99.117	ENSMLEG00000041908	SF3A1	100	99.117	Mandrillus_leucophaeus
ENSSTOG00000013892	SF3A1	97	85.640	ENSMAMG00000006460	sf3a1	96	86.441	Mastacembelus_armatus
ENSSTOG00000013892	SF3A1	100	84.635	ENSMZEG00005009633	sf3a1	99	85.275	Maylandia_zebra
ENSSTOG00000013892	SF3A1	95	94.312	ENSMGAG00000001330	SF3A1	99	93.411	Meleagris_gallopavo
ENSSTOG00000013892	SF3A1	92	95.355	ENSMAUG00000020317	Sf3a1	94	95.355	Mesocricetus_auratus
ENSSTOG00000013892	SF3A1	100	98.865	ENSMICG00000010038	SF3A1	100	98.865	Microcebus_murinus
ENSSTOG00000013892	SF3A1	100	98.991	ENSMOCG00000008438	Sf3a1	100	98.991	Microtus_ochrogaster
ENSSTOG00000013892	SF3A1	100	81.509	ENSMMOG00000015588	sf3a1	97	82.812	Mola_mola
ENSSTOG00000013892	SF3A1	100	98.235	ENSMODG00000009270	SF3A1	100	98.235	Monodelphis_domestica
ENSSTOG00000013892	SF3A1	100	84.635	ENSMALG00000000148	sf3a1	99	86.240	Monopterus_albus
ENSSTOG00000013892	SF3A1	100	98.235	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.235	Mus_caroli
ENSSTOG00000013892	SF3A1	100	98.235	ENSMUSG00000002129	Sf3a1	100	98.235	Mus_musculus
ENSSTOG00000013892	SF3A1	100	98.235	MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	Mus_pahari
ENSSTOG00000013892	SF3A1	100	98.235	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.235	Mus_spretus
ENSSTOG00000013892	SF3A1	100	99.117	ENSMPUG00000013144	SF3A1	100	99.117	Mustela_putorius_furo
ENSSTOG00000013892	SF3A1	100	99.496	ENSMLUG00000002139	SF3A1	100	99.496	Myotis_lucifugus
ENSSTOG00000013892	SF3A1	100	99.117	ENSNGAG00000016977	Sf3a1	100	99.117	Nannospalax_galili
ENSSTOG00000013892	SF3A1	100	84.277	ENSNBRG00000016642	sf3a1	96	86.693	Neolamprologus_brichardi
ENSSTOG00000013892	SF3A1	100	99.117	ENSNLEG00000003686	SF3A1	100	99.117	Nomascus_leucogenys
ENSSTOG00000013892	SF3A1	96	88.421	ENSMEUG00000008741	SF3A1	100	88.421	Notamacropus_eugenii
ENSSTOG00000013892	SF3A1	100	98.487	ENSOPRG00000016636	SF3A1	100	98.487	Ochotona_princeps
ENSSTOG00000013892	SF3A1	100	98.865	ENSODEG00000002571	SF3A1	100	98.865	Octodon_degus
ENSSTOG00000013892	SF3A1	100	84.277	ENSONIG00000010848	sf3a1	99	84.655	Oreochromis_niloticus
ENSSTOG00000013892	SF3A1	100	98.865	ENSOCUG00000007633	SF3A1	100	98.865	Oryctolagus_cuniculus
ENSSTOG00000013892	SF3A1	96	81.890	ENSORLG00000013050	sf3a1	97	84.699	Oryzias_latipes
ENSSTOG00000013892	SF3A1	99	80.253	ENSORLG00020003236	sf3a1	92	84.836	Oryzias_latipes_hni
ENSSTOG00000013892	SF3A1	100	82.390	ENSORLG00015017411	sf3a1	98	84.367	Oryzias_latipes_hsok
ENSSTOG00000013892	SF3A1	100	82.893	ENSOMEG00000013362	sf3a1	97	84.314	Oryzias_melastigma
ENSSTOG00000013892	SF3A1	100	98.865	ENSOGAG00000012931	SF3A1	100	98.865	Otolemur_garnettii
ENSSTOG00000013892	SF3A1	100	97.478	ENSOARG00000006849	SF3A1	100	97.478	Ovis_aries
ENSSTOG00000013892	SF3A1	100	97.856	ENSPPAG00000041790	SF3A1	100	97.856	Pan_paniscus
ENSSTOG00000013892	SF3A1	100	99.369	ENSPPRG00000004391	SF3A1	100	99.369	Panthera_pardus
ENSSTOG00000013892	SF3A1	97	99.352	ENSPTIG00000000844	SF3A1	100	99.352	Panthera_tigris_altaica
ENSSTOG00000013892	SF3A1	100	98.865	ENSPTRG00000014240	SF3A1	100	98.865	Pan_troglodytes
ENSSTOG00000013892	SF3A1	100	99.117	ENSPANG00000020772	SF3A1	100	99.117	Papio_anubis
ENSSTOG00000013892	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.539	Pelodiscus_sinensis
ENSSTOG00000013892	SF3A1	96	84.293	ENSPMGG00000023096	sf3a1	100	84.293	Periophthalmus_magnuspinnatus
ENSSTOG00000013892	SF3A1	100	98.991	ENSPEMG00000009494	Sf3a1	100	98.991	Peromyscus_maniculatus_bairdii
ENSSTOG00000013892	SF3A1	69	77.858	ENSPMAG00000007139	-	90	77.757	Petromyzon_marinus
ENSSTOG00000013892	SF3A1	100	97.982	ENSPCIG00000022692	SF3A1	100	97.982	Phascolarctos_cinereus
ENSSTOG00000013892	SF3A1	100	75.094	ENSPFOG00000016768	sf3a1	93	78.776	Poecilia_formosa
ENSSTOG00000013892	SF3A1	100	83.522	ENSPLAG00000017268	sf3a1	97	84.967	Poecilia_latipinna
ENSSTOG00000013892	SF3A1	84	85.843	ENSPMEG00000019811	sf3a1	98	85.090	Poecilia_mexicana
ENSSTOG00000013892	SF3A1	100	83.648	ENSPREG00000010347	sf3a1	97	85.359	Poecilia_reticulata
ENSSTOG00000013892	SF3A1	100	99.117	ENSPPYG00000011707	SF3A1	100	99.117	Pongo_abelii
ENSSTOG00000013892	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSSTOG00000013892	SF3A1	100	99.117	ENSPCOG00000026630	SF3A1	100	99.117	Propithecus_coquereli
ENSSTOG00000013892	SF3A1	100	94.956	ENSPVAG00000017719	SF3A1	94	98.389	Pteropus_vampyrus
ENSSTOG00000013892	SF3A1	100	84.635	ENSPNYG00000018706	sf3a1	99	85.275	Pundamilia_nyererei
ENSSTOG00000013892	SF3A1	96	84.525	ENSPNAG00000003721	sf3a1	98	85.306	Pygocentrus_nattereri
ENSSTOG00000013892	SF3A1	100	98.613	ENSRNOG00000005218	Sf3a1	100	98.613	Rattus_norvegicus
ENSSTOG00000013892	SF3A1	100	99.117	ENSRBIG00000032167	SF3A1	100	99.117	Rhinopithecus_bieti
ENSSTOG00000013892	SF3A1	100	99.117	ENSRROG00000044908	SF3A1	100	99.117	Rhinopithecus_roxellana
ENSSTOG00000013892	SF3A1	97	95.220	ENSSBOG00000021960	SF3A1	100	99.409	Saimiri_boliviensis_boliviensis
ENSSTOG00000013892	SF3A1	99	93.797	ENSSHAG00000003666	SF3A1	98	95.472	Sarcophilus_harrisii
ENSSTOG00000013892	SF3A1	100	83.500	ENSSFOG00015004579	sf3a1	99	85.256	Scleropages_formosus
ENSSTOG00000013892	SF3A1	100	81.635	ENSSMAG00000004275	sf3a1	99	81.877	Scophthalmus_maximus
ENSSTOG00000013892	SF3A1	100	84.025	ENSSDUG00000022219	sf3a1	97	85.359	Seriola_dumerili
ENSSTOG00000013892	SF3A1	100	84.025	ENSSLDG00000012642	sf3a1	97	85.359	Seriola_lalandi_dorsalis
ENSSTOG00000013892	SF3A1	97	95.855	ENSSARG00000005960	SF3A1	100	95.855	Sorex_araneus
ENSSTOG00000013892	SF3A1	96	92.228	ENSSPUG00000018863	SF3A1	100	91.791	Sphenodon_punctatus
ENSSTOG00000013892	SF3A1	100	84.654	ENSSPAG00000011856	sf3a1	97	86.013	Stegastes_partitus
ENSSTOG00000013892	SF3A1	100	99.243	ENSSSCG00000010002	SF3A1	100	99.243	Sus_scrofa
ENSSTOG00000013892	SF3A1	95	94.327	ENSTGUG00000010547	SF3A1	99	93.782	Taeniopygia_guttata
ENSSTOG00000013892	SF3A1	100	81.384	ENSTRUG00000006118	sf3a1	97	82.222	Takifugu_rubripes
ENSSTOG00000013892	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSSTOG00000013892	SF3A1	100	91.929	ENSTBEG00000012771	SF3A1	100	91.929	Tupaia_belangeri
ENSSTOG00000013892	SF3A1	100	98.992	ENSTTRG00000001535	SF3A1	100	98.992	Tursiops_truncatus
ENSSTOG00000013892	SF3A1	99	98.094	ENSUAMG00000006750	SF3A1	99	98.094	Ursus_americanus
ENSSTOG00000013892	SF3A1	99	98.087	ENSUMAG00000016665	SF3A1	99	98.087	Ursus_maritimus
ENSSTOG00000013892	SF3A1	100	99.117	ENSVVUG00000003075	SF3A1	100	99.117	Vulpes_vulpes
ENSSTOG00000013892	SF3A1	100	85.947	ENSXETG00000016144	sf3a1	97	86.727	Xenopus_tropicalis
ENSSTOG00000013892	SF3A1	100	83.270	ENSXCOG00000015653	sf3a1	97	84.444	Xiphophorus_couchianus
ENSSTOG00000013892	SF3A1	100	83.396	ENSXMAG00000002753	sf3a1	97	84.575	Xiphophorus_maculatus