EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000014524 (Gene tree)
Gene ID: 101970417
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 79946 bases
Position: chrJH393289.1:2030716-2110661
Accession: 101970417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000029938	ResIII	PF04851.15	4.1e-12	1	1
ENSSTOP00000025424	ResIII	PF04851.15	4.4e-12	1	1
ENSSTOP00000013030	ResIII	PF04851.15	4.5e-12	1	1
ENSSTOP00000025424	DEAD	PF00270.29	8.1e-07	1	1
ENSSTOP00000029938	DEAD	PF00270.29	8.7e-07	1	1
ENSSTOP00000013030	DEAD	PF00270.29	8.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000030279	SMARCA1-203	3153	-	ENSSTOP00000029938	1050 (aa)	-	A0A287D8S1
ENSSTOT00000014543	SMARCA1-201	4236	XM_021722360	ENSSTOP00000013030	1058 (aa)	XP_021578035	I3MN48
ENSSTOT00000034330	SMARCA1-202	4149	XM_013356061	ENSSTOP00000025424	1029 (aa)	XP_013211515	A0A287CVX9

Gene Model

Click here to download ENSSTOG00000014524's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000014524's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000014524	SMARCA1	59	39.628	ENSSTOG00000022273	CHD9	57	43.687
ENSSTOG00000014524	SMARCA1	55	39.336	ENSSTOG00000007032	CHD1L	60	39.336
ENSSTOG00000014524	SMARCA1	50	48.606	ENSSTOG00000021976	HELLS	65	48.606
ENSSTOG00000014524	SMARCA1	50	32.570	ENSSTOG00000010791	-	60	32.570
ENSSTOG00000014524	SMARCA1	94	85.876	ENSSTOG00000010683	SMARCA5	93	85.729

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000014524	SMARCA1	100	98.299	ENSG00000102038	SMARCA1	100	98.299	Homo_sapiens
ENSSTOG00000014524	SMARCA1	97	81.700	ENSAPOG00000016035	smarca5	98	83.807	Acanthochromis_polyacanthus
ENSSTOG00000014524	SMARCA1	100	96.075	ENSAMEG00000015218	SMARCA1	100	96.075	Ailuropoda_melanoleuca
ENSSTOG00000014524	SMARCA1	88	83.832	ENSACIG00000016982	smarca5	99	83.929	Amphilophus_citrinellus
ENSSTOG00000014524	SMARCA1	97	81.700	ENSAOCG00000015578	smarca5	95	82.661	Amphiprion_ocellaris
ENSSTOG00000014524	SMARCA1	97	81.700	ENSAPEG00000011117	smarca5	99	83.844	Amphiprion_percula
ENSSTOG00000014524	SMARCA1	97	81.294	ENSATEG00000012894	smarca5	97	81.673	Anabas_testudineus
ENSSTOG00000014524	SMARCA1	94	93.100	ENSAPLG00000013149	SMARCA1	100	93.075	Anas_platyrhynchos
ENSSTOG00000014524	SMARCA1	99	88.035	ENSACAG00000011376	SMARCA1	95	91.409	Anolis_carolinensis
ENSSTOG00000014524	SMARCA1	98	93.256	ENSANAG00000023098	SMARCA1	98	93.256	Aotus_nancymaae
ENSSTOG00000014524	SMARCA1	97	81.610	ENSACLG00000025356	smarca5	95	83.030	Astatotilapia_calliptera
ENSSTOG00000014524	SMARCA1	99	80.469	ENSAMXG00000005709	smarca5	94	83.897	Astyanax_mexicanus
ENSSTOG00000014524	SMARCA1	90	88.602	ENSAMXG00000011227	smarca1	99	90.061	Astyanax_mexicanus
ENSSTOG00000014524	SMARCA1	99	96.978	ENSBTAG00000002292	SMARCA1	100	96.575	Bos_taurus
ENSSTOG00000014524	SMARCA1	94	63.646	WBGene00002169	isw-1	97	63.471	Caenorhabditis_elegans
ENSSTOG00000014524	SMARCA1	100	98.204	ENSCJAG00000002868	SMARCA1	100	98.204	Callithrix_jacchus
ENSSTOG00000014524	SMARCA1	100	87.814	ENSCAFG00000018673	SMARCA1	100	87.814	Canis_familiaris
ENSSTOG00000014524	SMARCA1	100	97.921	ENSCAFG00020001751	SMARCA1	100	97.921	Canis_lupus_dingo
ENSSTOG00000014524	SMARCA1	100	97.172	ENSCHIG00000009837	SMARCA1	100	97.172	Capra_hircus
ENSSTOG00000014524	SMARCA1	95	98.100	ENSTSYG00000004240	SMARCA1	99	96.489	Carlito_syrichta
ENSSTOG00000014524	SMARCA1	100	95.395	ENSCPOG00000013601	SMARCA1	96	97.137	Cavia_porcellus
ENSSTOG00000014524	SMARCA1	100	95.085	ENSCCAG00000030817	SMARCA1	100	95.085	Cebus_capucinus
ENSSTOG00000014524	SMARCA1	100	97.333	ENSCATG00000015921	SMARCA1	100	97.333	Cercocebus_atys
ENSSTOG00000014524	SMARCA1	100	97.070	ENSCLAG00000002171	SMARCA1	100	97.070	Chinchilla_lanigera
ENSSTOG00000014524	SMARCA1	100	98.393	ENSCSAG00000008460	SMARCA1	100	98.393	Chlorocebus_sabaeus
ENSSTOG00000014524	SMARCA1	99	89.902	ENSCPBG00000001146	SMARCA1	95	92.807	Chrysemys_picta_bellii
ENSSTOG00000014524	SMARCA1	96	71.642	ENSCING00000004110	swi/snf	98	72.782	Ciona_intestinalis
ENSSTOG00000014524	SMARCA1	96	72.032	ENSCSAVG00000004620	-	100	73.831	Ciona_savignyi
ENSSTOG00000014524	SMARCA1	100	98.204	ENSCANG00000007183	SMARCA1	100	98.204	Colobus_angolensis_palliatus
ENSSTOG00000014524	SMARCA1	100	94.334	ENSCGRG00001010776	Smarca1	98	95.765	Cricetulus_griseus_chok1gshd
ENSSTOG00000014524	SMARCA1	95	95.110	ENSCGRG00000015301	Smarca1	99	95.110	Cricetulus_griseus_crigri
ENSSTOG00000014524	SMARCA1	95	83.214	ENSCSEG00000000328	smarca5	95	82.727	Cynoglossus_semilaevis
ENSSTOG00000014524	SMARCA1	97	81.194	ENSCVAG00000008668	smarca5	99	83.392	Cyprinodon_variegatus
ENSSTOG00000014524	SMARCA1	95	85.189	ENSDARG00000012776	smarca1	98	85.291	Danio_rerio
ENSSTOG00000014524	SMARCA1	97	81.157	ENSDARG00000052348	smarca5	94	83.487	Danio_rerio
ENSSTOG00000014524	SMARCA1	98	95.942	ENSDNOG00000004315	SMARCA1	99	95.942	Dasypus_novemcinctus
ENSSTOG00000014524	SMARCA1	100	95.524	ENSDORG00000009270	Smarca1	99	96.329	Dipodomys_ordii
ENSSTOG00000014524	SMARCA1	93	73.203	FBgn0011604	Iswi	98	72.206	Drosophila_melanogaster
ENSSTOG00000014524	SMARCA1	79	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSSTOG00000014524	SMARCA1	95	80.287	ENSEBUG00000001239	smarca5	96	80.490	Eptatretus_burgeri
ENSSTOG00000014524	SMARCA1	97	91.058	ENSEASG00005008218	SMARCA1	100	93.030	Equus_asinus_asinus
ENSSTOG00000014524	SMARCA1	100	97.644	ENSECAG00000012106	SMARCA1	100	97.644	Equus_caballus
ENSSTOG00000014524	SMARCA1	77	97.682	ENSEEUG00000014927	SMARCA1	84	97.682	Erinaceus_europaeus
ENSSTOG00000014524	SMARCA1	95	87.232	ENSELUG00000010515	smarca1	98	86.812	Esox_lucius
ENSSTOG00000014524	SMARCA1	100	98.015	ENSFCAG00000018496	SMARCA1	100	98.015	Felis_catus
ENSSTOG00000014524	SMARCA1	89	93.202	ENSFALG00000000209	SMARCA1	98	93.311	Ficedula_albicollis
ENSSTOG00000014524	SMARCA1	95	97.495	ENSFDAG00000009818	SMARCA1	98	97.495	Fukomys_damarensis
ENSSTOG00000014524	SMARCA1	99	79.883	ENSFHEG00000007687	smarca5	94	82.828	Fundulus_heteroclitus
ENSSTOG00000014524	SMARCA1	96	89.214	ENSGALG00000008431	SMARCA1	97	92.828	Gallus_gallus
ENSSTOG00000014524	SMARCA1	97	81.592	ENSGAFG00000017731	smarca5	95	82.828	Gambusia_affinis
ENSSTOG00000014524	SMARCA1	94	93.409	ENSGAGG00000023575	SMARCA1	100	93.416	Gopherus_agassizii
ENSSTOG00000014524	SMARCA1	74	96.000	ENSGGOG00000012841	-	98	96.000	Gorilla_gorilla
ENSSTOG00000014524	SMARCA1	100	97.070	ENSHGLG00000003080	SMARCA1	100	97.070	Heterocephalus_glaber_female
ENSSTOG00000014524	SMARCA1	94	97.219	ENSHGLG00100001102	SMARCA1	100	96.603	Heterocephalus_glaber_male
ENSSTOG00000014524	SMARCA1	97	81.070	ENSHCOG00000005458	smarca5	97	81.773	Hippocampus_comes
ENSSTOG00000014524	SMARCA1	95	86.239	ENSIPUG00000016905	Smarca1	99	86.831	Ictalurus_punctatus
ENSSTOG00000014524	SMARCA1	99	80.591	ENSIPUG00000005229	SMARCA5	97	82.556	Ictalurus_punctatus
ENSSTOG00000014524	SMARCA1	100	95.861	ENSJJAG00000002593	Smarca1	100	95.861	Jaculus_jaculus
ENSSTOG00000014524	SMARCA1	95	83.316	ENSKMAG00000003777	smarca5	95	82.929	Kryptolebias_marmoratus
ENSSTOG00000014524	SMARCA1	91	82.572	ENSLBEG00000013295	SMARCA1	100	84.576	Labrus_bergylta
ENSSTOG00000014524	SMARCA1	97	81.400	ENSLBEG00000018112	smarca5	95	82.424	Labrus_bergylta
ENSSTOG00000014524	SMARCA1	97	87.957	ENSLACG00000016697	SMARCA1	98	89.910	Latimeria_chalumnae
ENSSTOG00000014524	SMARCA1	96	88.349	ENSLOCG00000014591	smarca1	97	88.766	Lepisosteus_oculatus
ENSSTOG00000014524	SMARCA1	94	97.428	ENSLAFG00000000896	SMARCA1	100	96.421	Loxodonta_africana
ENSSTOG00000014524	SMARCA1	100	98.299	ENSMFAG00000002117	SMARCA1	100	97.333	Macaca_fascicularis
ENSSTOG00000014524	SMARCA1	100	97.333	ENSMMUG00000008818	SMARCA1	99	98.947	Macaca_mulatta
ENSSTOG00000014524	SMARCA1	100	97.333	ENSMNEG00000041768	SMARCA1	100	97.333	Macaca_nemestrina
ENSSTOG00000014524	SMARCA1	100	98.204	ENSMLEG00000043198	SMARCA1	100	98.204	Mandrillus_leucophaeus
ENSSTOG00000014524	SMARCA1	95	83.113	ENSMAMG00000014294	smarca5	95	83.030	Mastacembelus_armatus
ENSSTOG00000014524	SMARCA1	97	81.610	ENSMZEG00005009369	smarca5	95	83.030	Maylandia_zebra
ENSSTOG00000014524	SMARCA1	95	91.034	ENSMGAG00000007042	SMARCA1	100	91.034	Meleagris_gallopavo
ENSSTOG00000014524	SMARCA1	100	95.541	ENSMAUG00000008133	Smarca1	100	95.541	Mesocricetus_auratus
ENSSTOG00000014524	SMARCA1	100	97.732	ENSMICG00000015768	SMARCA1	100	97.732	Microcebus_murinus
ENSSTOG00000014524	SMARCA1	100	95.446	ENSMOCG00000009464	Smarca1	100	95.446	Microtus_ochrogaster
ENSSTOG00000014524	SMARCA1	96	80.262	ENSMMOG00000005547	smarca5	99	81.010	Mola_mola
ENSSTOG00000014524	SMARCA1	98	89.652	ENSMODG00000013187	-	99	89.835	Monodelphis_domestica
ENSSTOG00000014524	SMARCA1	95	82.907	ENSMALG00000002081	smarca5	97	82.819	Monopterus_albus
ENSSTOG00000014524	SMARCA1	100	95.390	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.390	Mus_caroli
ENSSTOG00000014524	SMARCA1	100	95.390	ENSMUSG00000031099	Smarca1	100	95.390	Mus_musculus
ENSSTOG00000014524	SMARCA1	100	95.390	MGP_PahariEiJ_G0031579	Smarca1	100	95.390	Mus_pahari
ENSSTOG00000014524	SMARCA1	100	95.484	MGP_SPRETEiJ_G0034192	Smarca1	100	95.484	Mus_spretus
ENSSTOG00000014524	SMARCA1	100	96.449	ENSMPUG00000017423	SMARCA1	95	96.449	Mustela_putorius_furo
ENSSTOG00000014524	SMARCA1	98	94.302	ENSMLUG00000029614	SMARCA1	98	93.916	Myotis_lucifugus
ENSSTOG00000014524	SMARCA1	100	96.110	ENSNGAG00000006492	Smarca1	100	96.110	Nannospalax_galili
ENSSTOG00000014524	SMARCA1	95	83.215	ENSNBRG00000004463	smarca5	99	83.131	Neolamprologus_brichardi
ENSSTOG00000014524	SMARCA1	100	96.542	ENSNLEG00000015179	SMARCA1	100	96.542	Nomascus_leucogenys
ENSSTOG00000014524	SMARCA1	90	81.933	ENSMEUG00000008819	SMARCA1	100	82.143	Notamacropus_eugenii
ENSSTOG00000014524	SMARCA1	100	96.205	ENSODEG00000012163	SMARCA1	100	96.205	Octodon_degus
ENSSTOG00000014524	SMARCA1	97	81.710	ENSONIG00000009993	smarca5	95	83.131	Oreochromis_niloticus
ENSSTOG00000014524	SMARCA1	94	93.718	ENSOANG00000002862	SMARCA1	100	93.724	Ornithorhynchus_anatinus
ENSSTOG00000014524	SMARCA1	100	96.503	ENSOCUG00000001047	SMARCA1	100	96.503	Oryctolagus_cuniculus
ENSSTOG00000014524	SMARCA1	95	83.214	ENSORLG00000021998	smarca5	96	81.873	Oryzias_latipes
ENSSTOG00000014524	SMARCA1	95	83.316	ENSORLG00020017679	smarca5	96	81.972	Oryzias_latipes_hni
ENSSTOG00000014524	SMARCA1	95	83.214	ENSORLG00015017210	smarca5	97	81.773	Oryzias_latipes_hsok
ENSSTOG00000014524	SMARCA1	95	83.214	ENSOMEG00000000086	smarca5	97	81.773	Oryzias_melastigma
ENSSTOG00000014524	SMARCA1	100	97.533	ENSOGAG00000004399	SMARCA1	100	97.533	Otolemur_garnettii
ENSSTOG00000014524	SMARCA1	94	98.558	ENSOARG00000014638	SMARCA1	100	98.571	Ovis_aries
ENSSTOG00000014524	SMARCA1	100	98.299	ENSPPAG00000034647	SMARCA1	100	98.299	Pan_paniscus
ENSSTOG00000014524	SMARCA1	100	98.015	ENSPPRG00000008929	SMARCA1	100	98.015	Panthera_pardus
ENSSTOG00000014524	SMARCA1	95	96.264	ENSPTIG00000000915	SMARCA1	98	96.264	Panthera_tigris_altaica
ENSSTOG00000014524	SMARCA1	100	98.299	ENSPTRG00000049876	SMARCA1	100	97.333	Pan_troglodytes
ENSSTOG00000014524	SMARCA1	100	98.299	ENSPANG00000003871	SMARCA1	100	98.299	Papio_anubis
ENSSTOG00000014524	SMARCA1	94	85.759	ENSPKIG00000013411	smarca1	98	86.929	Paramormyrops_kingsleyae
ENSSTOG00000014524	SMARCA1	94	93.100	ENSPSIG00000010101	SMARCA1	100	93.107	Pelodiscus_sinensis
ENSSTOG00000014524	SMARCA1	100	96.110	ENSPEMG00000017503	Smarca1	100	96.110	Peromyscus_maniculatus_bairdii
ENSSTOG00000014524	SMARCA1	95	92.208	ENSPCIG00000015460	SMARCA1	98	92.208	Phascolarctos_cinereus
ENSSTOG00000014524	SMARCA1	95	83.316	ENSPFOG00000007649	smarca5	95	82.828	Poecilia_formosa
ENSSTOG00000014524	SMARCA1	95	83.316	ENSPLAG00000003363	smarca5	95	82.828	Poecilia_latipinna
ENSSTOG00000014524	SMARCA1	95	83.214	ENSPMEG00000019849	smarca5	95	82.727	Poecilia_mexicana
ENSSTOG00000014524	SMARCA1	95	83.214	ENSPREG00000023250	smarca5	95	82.727	Poecilia_reticulata
ENSSTOG00000014524	SMARCA1	98	95.665	ENSPPYG00000020703	SMARCA1	98	95.665	Pongo_abelii
ENSSTOG00000014524	SMARCA1	78	90.909	ENSPCOG00000020722	SMARCA1	94	93.363	Propithecus_coquereli
ENSSTOG00000014524	SMARCA1	94	96.301	ENSPVAG00000003805	SMARCA1	94	96.301	Pteropus_vampyrus
ENSSTOG00000014524	SMARCA1	56	84.932	ENSPNYG00000012299	smarca5	91	83.378	Pundamilia_nyererei
ENSSTOG00000014524	SMARCA1	100	96.030	ENSRNOG00000003762	Smarca1	100	96.030	Rattus_norvegicus
ENSSTOG00000014524	SMARCA1	100	98.204	ENSRROG00000034167	SMARCA1	100	98.204	Rhinopithecus_roxellana
ENSSTOG00000014524	SMARCA1	94	99.073	ENSSBOG00000020641	SMARCA1	100	99.082	Saimiri_boliviensis_boliviensis
ENSSTOG00000014524	SMARCA1	94	86.317	ENSSHAG00000013518	SMARCA1	99	86.331	Sarcophilus_harrisii
ENSSTOG00000014524	SMARCA1	98	80.652	ENSSFOG00015016794	smarca5	100	83.505	Scleropages_formosus
ENSSTOG00000014524	SMARCA1	98	85.435	ENSSFOG00015009043	smarca1	100	85.260	Scleropages_formosus
ENSSTOG00000014524	SMARCA1	97	80.938	ENSSMAG00000004801	smarca5	95	82.371	Scophthalmus_maximus
ENSSTOG00000014524	SMARCA1	97	81.437	ENSSDUG00000020690	smarca5	96	82.525	Seriola_dumerili
ENSSTOG00000014524	SMARCA1	97	81.437	ENSSLDG00000025190	smarca5	96	82.525	Seriola_lalandi_dorsalis
ENSSTOG00000014524	SMARCA1	79	97.518	ENSSARG00000000842	SMARCA1	92	89.130	Sorex_araneus
ENSSTOG00000014524	SMARCA1	95	90.735	ENSSPUG00000000590	SMARCA1	95	92.119	Sphenodon_punctatus
ENSSTOG00000014524	SMARCA1	95	83.214	ENSSPAG00000002894	smarca5	97	83.807	Stegastes_partitus
ENSSTOG00000014524	SMARCA1	100	97.578	ENSSSCG00000012649	SMARCA1	100	97.578	Sus_scrofa
ENSSTOG00000014524	SMARCA1	94	92.276	ENSTGUG00000003899	-	100	92.261	Taeniopygia_guttata
ENSSTOG00000014524	SMARCA1	98	81.089	ENSTRUG00000014094	smarca5	97	81.710	Takifugu_rubripes
ENSSTOG00000014524	SMARCA1	97	80.299	ENSTNIG00000017717	smarca5	95	81.635	Tetraodon_nigroviridis
ENSSTOG00000014524	SMARCA1	94	91.064	ENSTBEG00000014973	SMARCA1	100	91.064	Tupaia_belangeri
ENSSTOG00000014524	SMARCA1	94	94.646	ENSTTRG00000006168	SMARCA1	100	94.646	Tursiops_truncatus
ENSSTOG00000014524	SMARCA1	100	97.353	ENSUAMG00000020201	SMARCA1	100	97.353	Ursus_americanus
ENSSTOG00000014524	SMARCA1	97	91.309	ENSUMAG00000004073	SMARCA1	97	99.027	Ursus_maritimus
ENSSTOG00000014524	SMARCA1	74	99.365	ENSVPAG00000010492	-	80	99.365	Vicugna_pacos
ENSSTOG00000014524	SMARCA1	95	98.400	ENSVVUG00000008878	SMARCA1	99	98.746	Vulpes_vulpes
ENSSTOG00000014524	SMARCA1	94	89.701	ENSXETG00000001526	smarca1	99	89.357	Xenopus_tropicalis
ENSSTOG00000014524	SMARCA1	97	81.493	ENSXCOG00000011170	smarca5	98	82.727	Xiphophorus_couchianus
ENSSTOG00000014524	SMARCA1	97	81.493	ENSXMAG00000009678	smarca5	97	84.868	Xiphophorus_maculatus