EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000019472 (Gene tree)
Gene ID: 101974800
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 1119 bases
Position: chrJH393491.1:1822737-1823855
Accession: 101974800
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000020715	RRM_5	PF13893.6	1.5e-12	1	3
ENSSTOP00000020715	RRM_5	PF13893.6	1.5e-12	2	3
ENSSTOP00000020715	RRM_5	PF13893.6	1.5e-12	3	3
ENSSTOP00000020715	RRM_1	PF00076.22	3.6e-83	1	4
ENSSTOP00000020715	RRM_1	PF00076.22	3.6e-83	2	4
ENSSTOP00000020715	RRM_1	PF00076.22	3.6e-83	3	4
ENSSTOP00000020715	RRM_1	PF00076.22	3.6e-83	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000025846	PABPC4L-201	1119	XM_005337448	ENSSTOP00000020715	372 (aa)	XP_005337505	I3N8L9

Gene Model

Click here to download ENSSTOG00000019472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000019472's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000019472	PABPC4L	98	63.959	ENSSTOG00000022096	-	98	63.959
ENSSTOG00000019472	PABPC4L	97	30.483	ENSSTOG00000025095	TIAL1	69	30.451
ENSSTOG00000019472	PABPC4L	51	35.366	ENSSTOG00000007740	MYEF2	56	35.366
ENSSTOG00000019472	PABPC4L	97	30.451	ENSSTOG00000008309	TIA1	69	30.451
ENSSTOG00000019472	PABPC4L	96	36.145	ENSSTOG00000007792	ELAVL2	86	36.145
ENSSTOG00000019472	PABPC4L	98	62.912	ENSSTOG00000003739	PABPC1L	62	62.912
ENSSTOG00000019472	PABPC4L	96	34.940	ENSSTOG00000021111	ELAVL3	90	34.940
ENSSTOG00000019472	PABPC4L	83	35.616	ENSSTOG00000000613	CELF1	73	35.616
ENSSTOG00000019472	PABPC4L	98	63.959	ENSSTOG00000026028	-	98	63.959
ENSSTOG00000019472	PABPC4L	98	71.429	ENSSTOG00000016395	PABPC3	63	71.429
ENSSTOG00000019472	PABPC4L	69	39.394	ENSSTOG00000022934	CELF3	91	39.394
ENSSTOG00000019472	PABPC4L	95	34.722	ENSSTOG00000010354	RBM23	63	34.722
ENSSTOG00000019472	PABPC4L	83	34.167	ENSSTOG00000001564	CELF2	62	34.167
ENSSTOG00000019472	PABPC4L	78	39.683	ENSSTOG00000019540	-	63	39.683
ENSSTOG00000019472	PABPC4L	98	73.497	ENSSTOG00000010416	PABPC4	61	73.901
ENSSTOG00000019472	PABPC4L	63	38.462	ENSSTOG00000027493	-	71	38.462
ENSSTOG00000019472	PABPC4L	96	31.169	ENSSTOG00000027271	ELAVL4	92	31.169

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000019472	PABPC4L	99	87.601	ENSG00000254535	PABPC4L	100	87.601	Homo_sapiens
ENSSTOG00000019472	PABPC4L	99	85.984	ENSANAG00000017199	PABPC4L	88	85.984	Aotus_nancymaae
ENSSTOG00000019472	PABPC4L	99	84.595	ENSBTAG00000046902	PABPC4L	99	84.595	Bos_taurus
ENSSTOG00000019472	PABPC4L	99	86.792	ENSCJAG00000045332	PABPC4L	87	86.792	Callithrix_jacchus
ENSSTOG00000019472	PABPC4L	99	71.816	ENSCAFG00020019182	-	55	71.816	Canis_lupus_dingo
ENSSTOG00000019472	PABPC4L	99	84.595	ENSCHIG00000007231	PABPC4L	99	84.595	Capra_hircus
ENSSTOG00000019472	PABPC4L	98	75.893	ENSCAPG00000000555	PABPC4L	100	75.893	Cavia_aperea
ENSSTOG00000019472	PABPC4L	99	73.585	ENSCPOG00000033167	PABPC4L	100	73.585	Cavia_porcellus
ENSSTOG00000019472	PABPC4L	99	86.523	ENSCCAG00000031681	PABPC4L	87	86.523	Cebus_capucinus
ENSSTOG00000019472	PABPC4L	99	80.863	ENSCLAG00000017628	PABPC4L	100	80.863	Chinchilla_lanigera
ENSSTOG00000019472	PABPC4L	99	84.906	ENSCANG00000037677	PABPC4L	100	84.906	Colobus_angolensis_palliatus
ENSSTOG00000019472	PABPC4L	99	81.941	ENSCGRG00001002070	Pabpc4l	100	81.941	Cricetulus_griseus_chok1gshd
ENSSTOG00000019472	PABPC4L	99	81.941	ENSCGRG00000020086	Pabpc4l	100	81.941	Cricetulus_griseus_crigri
ENSSTOG00000019472	PABPC4L	99	85.714	ENSDNOG00000031077	PABPC4L	96	85.714	Dasypus_novemcinctus
ENSSTOG00000019472	PABPC4L	99	85.135	ENSEASG00005007883	PABPC4L	99	85.135	Equus_asinus_asinus
ENSSTOG00000019472	PABPC4L	99	85.135	ENSECAG00000031416	PABPC4L	99	85.135	Equus_caballus
ENSSTOG00000019472	PABPC4L	99	84.865	ENSFCAG00000028270	PABPC4L	99	84.865	Felis_catus
ENSSTOG00000019472	PABPC4L	99	78.108	ENSFDAG00000019606	PABPC4L	99	78.108	Fukomys_damarensis
ENSSTOG00000019472	PABPC4L	99	87.062	ENSGGOG00000024991	PABPC4L	100	87.062	Gorilla_gorilla
ENSSTOG00000019472	PABPC4L	99	80.270	ENSHGLG00000020104	PABPC4L	99	80.270	Heterocephalus_glaber_female
ENSSTOG00000019472	PABPC4L	99	80.270	ENSHGLG00100020648	PABPC4L	99	80.270	Heterocephalus_glaber_male
ENSSTOG00000019472	PABPC4L	99	81.622	ENSJJAG00000004090	Pabpc4l	99	81.622	Jaculus_jaculus
ENSSTOG00000019472	PABPC4L	99	82.749	ENSMAUG00000016313	Pabpc4l	100	82.749	Mesocricetus_auratus
ENSSTOG00000019472	PABPC4L	99	87.871	ENSMICG00000029683	PABPC4L	100	87.871	Microcebus_murinus
ENSSTOG00000019472	PABPC4L	99	83.827	ENSMOCG00000007551	Pabpc4l	100	83.827	Microtus_ochrogaster
ENSSTOG00000019472	PABPC4L	99	79.784	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	79.784	Mus_caroli
ENSSTOG00000019472	PABPC4L	99	80.054	ENSMUSG00000090919	Pabpc4l	100	80.054	Mus_musculus
ENSSTOG00000019472	PABPC4L	99	79.784	MGP_PahariEiJ_G0026409	Pabpc4l	100	79.784	Mus_pahari
ENSSTOG00000019472	PABPC4L	99	79.515	MGP_SPRETEiJ_G0025903	Pabpc4l	100	79.515	Mus_spretus
ENSSTOG00000019472	PABPC4L	99	76.757	ENSMLUG00000008254	PABPC4L	99	76.757	Myotis_lucifugus
ENSSTOG00000019472	PABPC4L	99	85.445	ENSNGAG00000001502	Pabpc4l	100	85.445	Nannospalax_galili
ENSSTOG00000019472	PABPC4L	99	87.332	ENSNLEG00000019300	PABPC4L	100	87.332	Nomascus_leucogenys
ENSSTOG00000019472	PABPC4L	99	80.054	ENSOGAG00000026166	PABPC4L	100	80.054	Otolemur_garnettii
ENSSTOG00000019472	PABPC4L	99	87.963	ENSPPAG00000043745	PABPC4L	93	87.963	Pan_paniscus
ENSSTOG00000019472	PABPC4L	99	84.324	ENSPPRG00000018628	PABPC4L	99	84.324	Panthera_pardus
ENSSTOG00000019472	PABPC4L	99	84.865	ENSPTIG00000010106	PABPC4L	99	84.865	Panthera_tigris_altaica
ENSSTOG00000019472	PABPC4L	99	87.963	ENSPTRG00000045513	-	77	87.963	Pan_troglodytes
ENSSTOG00000019472	PABPC4L	99	82.480	ENSPEMG00000012565	Pabpc4l	100	82.480	Peromyscus_maniculatus_bairdii
ENSSTOG00000019472	PABPC4L	99	87.062	ENSPCOG00000025578	PABPC4L	100	87.062	Propithecus_coquereli
ENSSTOG00000019472	PABPC4L	99	80.593	ENSRNOG00000029749	Pabpc4l	100	80.593	Rattus_norvegicus
ENSSTOG00000019472	PABPC4L	99	84.636	ENSRBIG00000030229	PABPC4L	100	84.636	Rhinopithecus_bieti
ENSSTOG00000019472	PABPC4L	99	84.367	ENSRROG00000020367	PABPC4L	100	84.367	Rhinopithecus_roxellana
ENSSTOG00000019472	PABPC4L	99	85.984	ENSSBOG00000016382	PABPC4L	100	85.984	Saimiri_boliviensis_boliviensis
ENSSTOG00000019472	PABPC4L	99	78.919	ENSSSCG00000009067	PABPC4L	99	78.919	Sus_scrofa
ENSSTOG00000019472	PABPC4L	99	84.324	ENSUAMG00000001289	PABPC4L	99	84.324	Ursus_americanus
ENSSTOG00000019472	PABPC4L	99	84.324	ENSUMAG00000014887	PABPC4L	99	84.324	Ursus_maritimus
ENSSTOG00000019472	PABPC4L	88	74.390	ENSVVUG00000011060	-	75	74.390	Vulpes_vulpes