EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000021971 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: -
Full Name: C->U-editing enzyme APOBEC-1-like
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 5574 bases
Position: chrJH396108.1:628-6201
Accession: 101965334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000016053	APOBEC_N	PF08210.11	3.3e-23	1	1
ENSSTOP00000018747	APOBEC_N	PF08210.11	5.7e-14	1	1
ENSSTOP00000016053	APOBEC_C	PF05240.14	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000022780	APOBEC1-201	599	XM_005342835	ENSSTOP00000018747	98 (aa)	XP_005342892	I3N301
ENSSTOT00000022490	APOBEC1-202	525	-	ENSSTOP00000016053	175 (aa)	-	I3MVA8

Gene Model

Click here to download ENSSTOG00000021971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000021971's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000021971	APOBEC1	74	30.769	ENSSTOG00000010972	AICDA	62	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000021971	APOBEC1	100	80.612	ENSG00000111701	APOBEC1	91	65.888	Homo_sapiens
ENSSTOG00000021971	APOBEC1	100	85.714	ENSAMEG00000007098	APOBEC1	91	67.757	Ailuropoda_melanoleuca
ENSSTOG00000021971	APOBEC1	98	43.564	ENSACAG00000028578	-	69	42.857	Anolis_carolinensis
ENSSTOG00000021971	APOBEC1	100	79.592	ENSANAG00000027743	APOBEC1	87	63.256	Aotus_nancymaae
ENSSTOG00000021971	APOBEC1	100	73.469	ENSBTAG00000014683	APOBEC1	91	58.140	Bos_taurus
ENSSTOG00000021971	APOBEC1	100	78.571	ENSCJAG00000005398	APOBEC1	97	65.116	Callithrix_jacchus
ENSSTOG00000021971	APOBEC1	100	82.653	ENSCAFG00000013901	APOBEC1	91	65.581	Canis_familiaris
ENSSTOG00000021971	APOBEC1	100	83.673	ENSCAFG00020003511	APOBEC1	90	66.047	Canis_lupus_dingo
ENSSTOG00000021971	APOBEC1	100	74.490	ENSCHIG00000011898	APOBEC1	93	56.279	Capra_hircus
ENSSTOG00000021971	APOBEC1	100	81.633	ENSTSYG00000029141	APOBEC1	94	81.061	Carlito_syrichta
ENSSTOG00000021971	APOBEC1	100	65.306	ENSCAPG00000015882	-	99	52.804	Cavia_aperea
ENSSTOG00000021971	APOBEC1	100	66.327	ENSCPOG00000033068	APOBEC1	91	51.869	Cavia_porcellus
ENSSTOG00000021971	APOBEC1	100	79.592	ENSCCAG00000022258	APOBEC1	91	64.651	Cebus_capucinus
ENSSTOG00000021971	APOBEC1	100	79.592	ENSCATG00000021613	APOBEC1	87	64.651	Cercocebus_atys
ENSSTOG00000021971	APOBEC1	100	65.306	ENSCLAG00000014645	APOBEC1	93	54.673	Chinchilla_lanigera
ENSSTOG00000021971	APOBEC1	68	82.090	ENSCSAG00000009817	APOBEC1	96	63.043	Chlorocebus_sabaeus
ENSSTOG00000021971	APOBEC1	89	48.864	ENSCPBG00000014328	-	76	40.571	Chrysemys_picta_bellii
ENSSTOG00000021971	APOBEC1	89	44.318	ENSCPBG00000014327	-	53	39.552	Chrysemys_picta_bellii
ENSSTOG00000021971	APOBEC1	89	45.455	ENSCPBG00000017398	-	57	44.961	Chrysemys_picta_bellii
ENSSTOG00000021971	APOBEC1	98	47.423	ENSCPBG00000014331	-	65	42.177	Chrysemys_picta_bellii
ENSSTOG00000021971	APOBEC1	98	48.454	ENSCPBG00000014335	-	56	48.201	Chrysemys_picta_bellii
ENSSTOG00000021971	APOBEC1	100	78.571	ENSCANG00000038359	APOBEC1	93	65.116	Colobus_angolensis_palliatus
ENSSTOG00000021971	APOBEC1	99	72.165	ENSCGRG00001011130	Apobec1	93	57.477	Cricetulus_griseus_chok1gshd
ENSSTOG00000021971	APOBEC1	99	72.165	ENSCGRG00000008644	Apobec1	93	57.477	Cricetulus_griseus_crigri
ENSSTOG00000021971	APOBEC1	100	84.694	ENSDNOG00000010926	APOBEC1	91	64.651	Dasypus_novemcinctus
ENSSTOG00000021971	APOBEC1	100	66.667	ENSDORG00000023717	Apobec1	100	54.206	Dipodomys_ordii
ENSSTOG00000021971	APOBEC1	100	74.490	ENSETEG00000004867	APOBEC1	91	59.070	Echinops_telfairi
ENSSTOG00000021971	APOBEC1	100	80.612	ENSEASG00005015951	APOBEC1	90	65.116	Equus_asinus_asinus
ENSSTOG00000021971	APOBEC1	68	83.582	ENSECAG00000017163	APOBEC1	96	63.587	Equus_caballus
ENSSTOG00000021971	APOBEC1	100	68.367	ENSEEUG00000009112	-	96	53.488	Erinaceus_europaeus
ENSSTOG00000021971	APOBEC1	100	69.388	ENSEEUG00000007530	-	97	54.412	Erinaceus_europaeus
ENSSTOG00000021971	APOBEC1	100	82.653	ENSFCAG00000009350	APOBEC1	91	64.651	Felis_catus
ENSSTOG00000021971	APOBEC1	98	48.454	ENSFALG00000007257	-	71	48.175	Ficedula_albicollis
ENSSTOG00000021971	APOBEC1	92	43.284	ENSFDAG00000018470	APOBEC1	97	43.284	Fukomys_damarensis
ENSSTOG00000021971	APOBEC1	98	49.485	ENSGAGG00000011837	-	71	52.756	Gopherus_agassizii
ENSSTOG00000021971	APOBEC1	88	42.529	ENSGAGG00000021744	-	68	37.356	Gopherus_agassizii
ENSSTOG00000021971	APOBEC1	99	52.041	ENSGAGG00000004947	-	75	54.701	Gopherus_agassizii
ENSSTOG00000021971	APOBEC1	100	59.184	ENSHGLG00000001495	APOBEC1	91	50.935	Heterocephalus_glaber_female
ENSSTOG00000021971	APOBEC1	100	58.163	ENSHGLG00100002187	APOBEC1	91	50.467	Heterocephalus_glaber_male
ENSSTOG00000021971	APOBEC1	100	75.510	ENSJJAG00000022108	Apobec1	93	62.617	Jaculus_jaculus
ENSSTOG00000021971	APOBEC1	100	83.673	ENSLAFG00000030837	APOBEC1	96	65.888	Loxodonta_africana
ENSSTOG00000021971	APOBEC1	100	79.592	ENSMFAG00000000277	APOBEC1	96	63.043	Macaca_fascicularis
ENSSTOG00000021971	APOBEC1	100	79.592	ENSMNEG00000029670	APOBEC1	91	64.186	Macaca_nemestrina
ENSSTOG00000021971	APOBEC1	100	79.592	ENSMLEG00000036301	APOBEC1	91	64.651	Mandrillus_leucophaeus
ENSSTOG00000021971	APOBEC1	99	71.134	ENSMAUG00000022167	Apobec1	96	56.542	Mesocricetus_auratus
ENSSTOG00000021971	APOBEC1	100	77.551	ENSMICG00000043645	APOBEC1	93	64.651	Microcebus_murinus
ENSSTOG00000021971	APOBEC1	99	75.258	ENSMOCG00000016170	-	86	75.258	Microtus_ochrogaster
ENSSTOG00000021971	APOBEC1	100	71.429	ENSMODG00000018004	APOBEC1	91	53.023	Monodelphis_domestica
ENSSTOG00000021971	APOBEC1	99	72.165	ENSMUSG00000040613	Apobec1	88	70.755	Mus_musculus
ENSSTOG00000021971	APOBEC1	99	69.072	MGP_PahariEiJ_G0022580	-	88	67.925	Mus_pahari
ENSSTOG00000021971	APOBEC1	99	72.165	MGP_SPRETEiJ_G0029857	Apobec1	88	70.755	Mus_spretus
ENSSTOG00000021971	APOBEC1	100	80.612	ENSMPUG00000017532	APOBEC1	91	63.256	Mustela_putorius_furo
ENSSTOG00000021971	APOBEC1	99	71.134	ENSNGAG00000022607	Apobec1	93	57.009	Nannospalax_galili
ENSSTOG00000021971	APOBEC1	100	79.592	ENSNLEG00000005342	APOBEC1	91	65.421	Nomascus_leucogenys
ENSSTOG00000021971	APOBEC1	100	74.490	ENSMEUG00000013406	APOBEC1	91	51.163	Notamacropus_eugenii
ENSSTOG00000021971	APOBEC1	100	68.367	ENSOPRG00000009508	-	93	56.287	Ochotona_princeps
ENSSTOG00000021971	APOBEC1	100	68.367	ENSODEG00000001157	-	100	68.367	Octodon_degus
ENSSTOG00000021971	APOBEC1	100	77.551	ENSOCUG00000025736	APOBEC1	81	61.860	Oryctolagus_cuniculus
ENSSTOG00000021971	APOBEC1	100	77.551	ENSOGAG00000026415	APOBEC1	91	63.256	Otolemur_garnettii
ENSSTOG00000021971	APOBEC1	100	74.490	ENSOARG00000002072	APOBEC1	90	59.535	Ovis_aries
ENSSTOG00000021971	APOBEC1	100	67.347	ENSPPAG00000027657	APOBEC1	90	60.748	Pan_paniscus
ENSSTOG00000021971	APOBEC1	100	82.653	ENSPPRG00000012182	APOBEC1	91	65.116	Panthera_pardus
ENSSTOG00000021971	APOBEC1	100	82.653	ENSPTIG00000020280	APOBEC1	91	65.116	Panthera_tigris_altaica
ENSSTOG00000021971	APOBEC1	100	83.673	ENSPTRG00000004614	APOBEC1	91	67.757	Pan_troglodytes
ENSSTOG00000021971	APOBEC1	100	79.592	ENSPANG00000021027	APOBEC1	91	65.116	Papio_anubis
ENSSTOG00000021971	APOBEC1	99	43.878	ENSPSIG00000012568	-	60	44.604	Pelodiscus_sinensis
ENSSTOG00000021971	APOBEC1	74	45.283	ENSPSIG00000012791	-	72	45.283	Pelodiscus_sinensis
ENSSTOG00000021971	APOBEC1	99	71.134	ENSPEMG00000023841	Apobec1	93	58.411	Peromyscus_maniculatus_bairdii
ENSSTOG00000021971	APOBEC1	100	77.551	ENSPCIG00000023973	APOBEC1	91	55.349	Phascolarctos_cinereus
ENSSTOG00000021971	APOBEC1	100	81.633	ENSPPYG00000004228	APOBEC1	86	65.421	Pongo_abelii
ENSSTOG00000021971	APOBEC1	100	78.571	ENSPCAG00000008733	APOBEC1	74	75.540	Procavia_capensis
ENSSTOG00000021971	APOBEC1	100	80.612	ENSPCOG00000013957	APOBEC1	95	66.977	Propithecus_coquereli
ENSSTOG00000021971	APOBEC1	100	84.694	ENSPVAG00000010709	APOBEC1	91	63.084	Pteropus_vampyrus
ENSSTOG00000021971	APOBEC1	99	73.196	ENSRNOG00000015411	Apobec1	93	56.808	Rattus_norvegicus
ENSSTOG00000021971	APOBEC1	100	78.571	ENSRBIG00000031161	APOBEC1	91	65.116	Rhinopithecus_bieti
ENSSTOG00000021971	APOBEC1	100	78.571	ENSRROG00000033576	APOBEC1	96	64.130	Rhinopithecus_roxellana
ENSSTOG00000021971	APOBEC1	100	79.592	ENSSBOG00000030587	APOBEC1	79	77.698	Saimiri_boliviensis_boliviensis
ENSSTOG00000021971	APOBEC1	100	74.490	ENSSHAG00000008925	APOBEC1	94	54.884	Sarcophilus_harrisii
ENSSTOG00000021971	APOBEC1	100	68.367	ENSSARG00000011972	-	98	71.318	Sorex_araneus
ENSSTOG00000021971	APOBEC1	100	65.306	ENSSARG00000000032	-	81	65.468	Sorex_araneus
ENSSTOG00000021971	APOBEC1	98	44.898	ENSSPUG00000009044	-	54	43.571	Sphenodon_punctatus
ENSSTOG00000021971	APOBEC1	100	76.531	ENSSSCG00000000668	APOBEC1	91	63.256	Sus_scrofa
ENSSTOG00000021971	APOBEC1	99	45.918	ENSTGUG00000013118	-	95	47.482	Taeniopygia_guttata
ENSSTOG00000021971	APOBEC1	100	76.531	ENSTBEG00000010043	APOBEC1	91	61.502	Tupaia_belangeri
ENSSTOG00000021971	APOBEC1	100	71.429	ENSTTRG00000014015	APOBEC1	86	59.763	Tursiops_truncatus
ENSSTOG00000021971	APOBEC1	100	84.694	ENSUAMG00000011636	APOBEC1	88	66.512	Ursus_americanus
ENSSTOG00000021971	APOBEC1	100	84.694	ENSUMAG00000016552	APOBEC1	88	66.512	Ursus_maritimus
ENSSTOG00000021971	APOBEC1	100	78.571	ENSVPAG00000001343	APOBEC1	91	59.070	Vicugna_pacos
ENSSTOG00000021971	APOBEC1	100	83.673	ENSVVUG00000010522	APOBEC1	91	66.047	Vulpes_vulpes