EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000025907 (Gene tree)
Gene ID: 101960024
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 27745 bases
Position: chrJH393405.1:1130078-1157822
Accession: 1918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000024760	ResIII	PF04851.15	1.6e-08	1	1
ENSSTOP00000031773	ResIII	PF04851.15	1.7e-08	1	1
ENSSTOP00000015560	ResIII	PF04851.15	1.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000030826	CHD3-201	10370	XM_013361721	ENSSTOP00000031773	1967 (aa)	-	A0A287DE00
ENSSTOT00000038120	CHD3-203	5793	-	ENSSTOP00000024760	1930 (aa)	-	A0A287CTW0
ENSSTOT00000023553	CHD3-202	5988	-	ENSSTOP00000015560	1995 (aa)	-	I3MTW5

Gene Model

Click here to download ENSSTOG00000025907's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000025907's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000025907	CHD3	90	71.500	ENSSTOG00000007601	-	95	70.317
ENSSTOG00000025907	CHD3	96	68.163	ENSSTOG00000002778	CHD5	98	70.746

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000025907	CHD3	100	99.068	ENSG00000170004	CHD3	99	98.864	Homo_sapiens
ENSSTOG00000025907	CHD3	86	76.877	ENSAPOG00000005614	chd3	94	82.353	Acanthochromis_polyacanthus
ENSSTOG00000025907	CHD3	69	96.994	ENSAMEG00000003025	-	100	96.994	Ailuropoda_melanoleuca
ENSSTOG00000025907	CHD3	86	76.248	ENSACIG00000019671	chd3	99	79.762	Amphilophus_citrinellus
ENSSTOG00000025907	CHD3	92	80.756	ENSAOCG00000023784	chd3	97	81.771	Amphiprion_ocellaris
ENSSTOG00000025907	CHD3	95	77.299	ENSAPEG00000006341	chd3	96	73.448	Amphiprion_percula
ENSSTOG00000025907	CHD3	95	81.315	ENSATEG00000000848	chd3	99	74.408	Anabas_testudineus
ENSSTOG00000025907	CHD3	99	85.248	ENSACAG00000004276	CHD3	96	84.662	Anolis_carolinensis
ENSSTOG00000025907	CHD3	100	96.039	ENSANAG00000034323	CHD3	99	98.827	Aotus_nancymaae
ENSSTOG00000025907	CHD3	92	80.707	ENSACLG00000009222	chd3	99	74.843	Astatotilapia_calliptera
ENSSTOG00000025907	CHD3	99	97.969	ENSBTAG00000014377	CHD3	97	97.969	Bos_taurus
ENSSTOG00000025907	CHD3	100	98.913	ENSCJAG00000014766	CHD3	99	98.299	Callithrix_jacchus
ENSSTOG00000025907	CHD3	99	98.171	ENSCAFG00000016859	CHD3	99	97.545	Canis_familiaris
ENSSTOG00000025907	CHD3	95	97.922	ENSCAFG00020007422	CHD3	100	98.036	Canis_lupus_dingo
ENSSTOG00000025907	CHD3	99	98.323	ENSCHIG00000016737	CHD3	100	98.029	Capra_hircus
ENSSTOG00000025907	CHD3	100	98.707	ENSTSYG00000035658	CHD3	99	98.249	Carlito_syrichta
ENSSTOG00000025907	CHD3	99	95.328	ENSCAPG00000014864	CHD3	99	94.584	Cavia_aperea
ENSSTOG00000025907	CHD3	99	97.867	ENSCPOG00000022653	CHD3	99	97.091	Cavia_porcellus
ENSSTOG00000025907	CHD3	100	98.810	ENSCCAG00000034792	CHD3	99	98.249	Cebus_capucinus
ENSSTOG00000025907	CHD3	100	98.965	ENSCATG00000041717	CHD3	99	98.448	Cercocebus_atys
ENSSTOG00000025907	CHD3	100	98.293	ENSCLAG00000010523	CHD3	100	98.293	Chinchilla_lanigera
ENSSTOG00000025907	CHD3	100	98.629	ENSCSAG00000011122	CHD3	100	98.629	Chlorocebus_sabaeus
ENSSTOG00000025907	CHD3	90	84.747	ENSCPBG00000011966	CHD3	99	87.821	Chrysemys_picta_bellii
ENSSTOG00000025907	CHD3	100	98.965	ENSCANG00000037641	CHD3	99	98.498	Colobus_angolensis_palliatus
ENSSTOG00000025907	CHD3	100	97.518	ENSCGRG00001011306	Chd3	100	97.518	Cricetulus_griseus_chok1gshd
ENSSTOG00000025907	CHD3	94	98.529	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
ENSSTOG00000025907	CHD3	92	79.868	ENSCSEG00000004489	chd3	99	76.156	Cynoglossus_semilaevis
ENSSTOG00000025907	CHD3	87	81.673	ENSCVAG00000007293	chd3	95	81.673	Cyprinodon_variegatus
ENSSTOG00000025907	CHD3	95	77.446	ENSDARG00000021405	chd3	99	76.449	Danio_rerio
ENSSTOG00000025907	CHD3	99	83.519	ENSDNOG00000047846	CHD3	91	92.516	Dasypus_novemcinctus
ENSSTOG00000025907	CHD3	100	97.774	ENSDORG00000010713	Chd3	100	97.774	Dipodomys_ordii
ENSSTOG00000025907	CHD3	98	91.905	ENSETEG00000017733	CHD3	100	91.905	Echinops_telfairi
ENSSTOG00000025907	CHD3	71	77.849	ENSEBUG00000008310	chd3	99	70.532	Eptatretus_burgeri
ENSSTOG00000025907	CHD3	93	98.472	ENSEASG00005019360	CHD3	100	98.472	Equus_asinus_asinus
ENSSTOG00000025907	CHD3	93	98.527	ENSECAG00000010051	CHD3	100	98.527	Equus_caballus
ENSSTOG00000025907	CHD3	93	98.305	ENSEEUG00000015205	CHD3	92	100.000	Erinaceus_europaeus
ENSSTOG00000025907	CHD3	80	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSSTOG00000025907	CHD3	99	97.917	ENSFCAG00000009629	CHD3	96	97.917	Felis_catus
ENSSTOG00000025907	CHD3	100	95.787	ENSFDAG00000008220	CHD3	99	95.787	Fukomys_damarensis
ENSSTOG00000025907	CHD3	90	80.305	ENSGMOG00000013599	chd3	91	80.914	Gadus_morhua
ENSSTOG00000025907	CHD3	60	75.000	ENSGAFG00000004055	chd3	99	76.496	Gambusia_affinis
ENSSTOG00000025907	CHD3	99	70.547	ENSGACG00000019275	chd3	100	70.875	Gasterosteus_aculeatus
ENSSTOG00000025907	CHD3	76	87.152	ENSGAGG00000013164	CHD3	98	87.152	Gopherus_agassizii
ENSSTOG00000025907	CHD3	100	98.913	ENSGGOG00000013496	CHD3	99	98.548	Gorilla_gorilla
ENSSTOG00000025907	CHD3	100	98.241	ENSHGLG00000012017	CHD3	99	98.122	Heterocephalus_glaber_female
ENSSTOG00000025907	CHD3	89	90.870	ENSHGLG00100013902	CHD3	99	90.870	Heterocephalus_glaber_male
ENSSTOG00000025907	CHD3	94	72.531	ENSHCOG00000010170	chd3	96	73.157	Hippocampus_comes
ENSSTOG00000025907	CHD3	91	74.366	ENSIPUG00000003271	chd3	96	74.845	Ictalurus_punctatus
ENSSTOG00000025907	CHD3	100	97.362	ENSJJAG00000017633	Chd3	100	97.362	Jaculus_jaculus
ENSSTOG00000025907	CHD3	86	90.047	ENSKMAG00000019292	chd3	97	75.985	Kryptolebias_marmoratus
ENSSTOG00000025907	CHD3	97	70.570	ENSLBEG00000028485	chd3	92	80.233	Labrus_bergylta
ENSSTOG00000025907	CHD3	97	74.619	ENSLACG00000008031	CHD3	98	75.063	Latimeria_chalumnae
ENSSTOG00000025907	CHD3	98	76.761	ENSLOCG00000013965	chd3	97	77.519	Lepisosteus_oculatus
ENSSTOG00000025907	CHD3	96	94.330	ENSLAFG00000000572	CHD3	100	94.330	Loxodonta_africana
ENSSTOG00000025907	CHD3	100	98.913	ENSMFAG00000020113	CHD3	99	98.398	Macaca_fascicularis
ENSSTOG00000025907	CHD3	100	96.394	ENSMMUG00000022221	CHD3	99	96.046	Macaca_mulatta
ENSSTOG00000025907	CHD3	100	98.913	ENSMNEG00000001728	CHD3	99	98.398	Macaca_nemestrina
ENSSTOG00000025907	CHD3	100	98.965	ENSMLEG00000032249	CHD3	99	98.448	Mandrillus_leucophaeus
ENSSTOG00000025907	CHD3	86	76.726	ENSMAMG00000000564	chd3	99	77.262	Mastacembelus_armatus
ENSSTOG00000025907	CHD3	100	97.363	ENSMAUG00000013873	Chd3	96	97.363	Mesocricetus_auratus
ENSSTOG00000025907	CHD3	99	98.831	ENSMICG00000008741	CHD3	99	96.047	Microcebus_murinus
ENSSTOG00000025907	CHD3	99	97.460	ENSMOCG00000004848	Chd3	100	97.460	Microtus_ochrogaster
ENSSTOG00000025907	CHD3	96	74.879	ENSMMOG00000012699	chd3	99	74.334	Mola_mola
ENSSTOG00000025907	CHD3	93	94.500	ENSMODG00000007509	CHD3	100	94.500	Monodelphis_domestica
ENSSTOG00000025907	CHD3	100	97.314	MGP_CAROLIEiJ_G0016564	Chd3	100	97.402	Mus_caroli
ENSSTOG00000025907	CHD3	100	97.417	ENSMUSG00000018474	Chd3	99	97.508	Mus_musculus
ENSSTOG00000025907	CHD3	100	97.416	MGP_PahariEiJ_G0017695	Chd3	100	97.507	Mus_pahari
ENSSTOG00000025907	CHD3	100	97.417	MGP_SPRETEiJ_G0017400	Chd3	100	97.508	Mus_spretus
ENSSTOG00000025907	CHD3	87	97.900	ENSMPUG00000008861	CHD3	100	97.900	Mustela_putorius_furo
ENSSTOG00000025907	CHD3	99	97.511	ENSMLUG00000014643	-	99	96.897	Myotis_lucifugus
ENSSTOG00000025907	CHD3	99	97.764	ENSNGAG00000000773	Chd3	99	97.275	Nannospalax_galili
ENSSTOG00000025907	CHD3	86	76.555	ENSNBRG00000000636	chd3	98	76.286	Neolamprologus_brichardi
ENSSTOG00000025907	CHD3	98	96.300	ENSNLEG00000009770	CHD3	100	95.898	Nomascus_leucogenys
ENSSTOG00000025907	CHD3	88	91.078	ENSMEUG00000005852	CHD3	87	91.078	Notamacropus_eugenii
ENSSTOG00000025907	CHD3	95	96.526	ENSOPRG00000011069	CHD3	100	96.526	Ochotona_princeps
ENSSTOG00000025907	CHD3	99	97.867	ENSODEG00000017785	CHD3	100	97.284	Octodon_degus
ENSSTOG00000025907	CHD3	92	80.612	ENSONIG00000009292	chd3	100	74.897	Oreochromis_niloticus
ENSSTOG00000025907	CHD3	99	93.588	ENSOCUG00000029299	CHD3	100	93.438	Oryctolagus_cuniculus
ENSSTOG00000025907	CHD3	83	72.017	ENSORLG00000007107	chd3	93	72.202	Oryzias_latipes
ENSSTOG00000025907	CHD3	58	72.992	ENSORLG00020008387	chd3	95	73.698	Oryzias_latipes_hni
ENSSTOG00000025907	CHD3	72	80.429	ENSOMEG00000013691	chd3	99	78.512	Oryzias_melastigma
ENSSTOG00000025907	CHD3	100	97.919	ENSOGAG00000003216	CHD3	100	97.919	Otolemur_garnettii
ENSSTOG00000025907	CHD3	99	95.890	ENSOARG00000017855	CHD3	99	95.890	Ovis_aries
ENSSTOG00000025907	CHD3	100	96.647	ENSPPAG00000032886	CHD3	99	96.347	Pan_paniscus
ENSSTOG00000025907	CHD3	100	98.034	ENSPPRG00000000626	CHD3	99	97.396	Panthera_pardus
ENSSTOG00000025907	CHD3	100	99.120	ENSPTRG00000008714	CHD3	99	98.748	Pan_troglodytes
ENSSTOG00000025907	CHD3	100	98.832	ENSPANG00000023938	CHD3	99	98.448	Papio_anubis
ENSSTOG00000025907	CHD3	95	80.095	ENSPKIG00000006305	chd3	99	80.095	Paramormyrops_kingsleyae
ENSSTOG00000025907	CHD3	56	90.693	ENSPSIG00000010177	CHD3	98	90.967	Pelodiscus_sinensis
ENSSTOG00000025907	CHD3	99	97.205	ENSPEMG00000014262	Chd3	100	96.821	Peromyscus_maniculatus_bairdii
ENSSTOG00000025907	CHD3	100	93.882	ENSPCIG00000005442	CHD3	99	94.087	Phascolarctos_cinereus
ENSSTOG00000025907	CHD3	96	72.875	ENSPFOG00000012464	chd3	92	73.645	Poecilia_formosa
ENSSTOG00000025907	CHD3	87	83.065	ENSPLAG00000002887	chd3	98	72.328	Poecilia_latipinna
ENSSTOG00000025907	CHD3	54	81.490	ENSPMEG00000016725	chd3	94	73.160	Poecilia_mexicana
ENSSTOG00000025907	CHD3	97	75.480	ENSPREG00000011044	chd3	99	78.050	Poecilia_reticulata
ENSSTOG00000025907	CHD3	98	96.008	ENSPPYG00000007940	CHD3	98	96.008	Pongo_abelii
ENSSTOG00000025907	CHD3	96	97.575	ENSPCAG00000004350	CHD3	96	97.575	Procavia_capensis
ENSSTOG00000025907	CHD3	100	98.655	ENSPCOG00000020952	CHD3	99	98.578	Propithecus_coquereli
ENSSTOG00000025907	CHD3	87	96.804	ENSPVAG00000016344	CHD3	87	96.804	Pteropus_vampyrus
ENSSTOG00000025907	CHD3	96	78.520	ENSPNAG00000020393	chd3	98	80.334	Pygocentrus_nattereri
ENSSTOG00000025907	CHD3	93	96.242	ENSRNOG00000009722	Chd3	100	96.187	Rattus_norvegicus
ENSSTOG00000025907	CHD3	100	95.657	ENSRBIG00000033562	CHD3	99	95.304	Rhinopithecus_bieti
ENSSTOG00000025907	CHD3	100	98.965	ENSRROG00000029554	CHD3	98	98.965	Rhinopithecus_roxellana
ENSSTOG00000025907	CHD3	100	99.017	ENSSBOG00000020719	CHD3	99	98.415	Saimiri_boliviensis_boliviensis
ENSSTOG00000025907	CHD3	99	94.964	ENSSHAG00000014412	CHD3	100	94.964	Sarcophilus_harrisii
ENSSTOG00000025907	CHD3	88	80.811	ENSSFOG00015023123	chd3	98	75.541	Scleropages_formosus
ENSSTOG00000025907	CHD3	79	90.741	ENSSMAG00000006451	chd3	99	77.270	Scophthalmus_maximus
ENSSTOG00000025907	CHD3	56	72.894	ENSSDUG00000005792	chd3	95	73.443	Seriola_dumerili
ENSSTOG00000025907	CHD3	92	80.412	ENSSPAG00000013694	chd3	97	81.250	Stegastes_partitus
ENSSTOG00000025907	CHD3	99	98.173	ENSSSCG00000021363	CHD3	100	98.092	Sus_scrofa
ENSSTOG00000025907	CHD3	77	76.494	ENSTRUG00000014990	chd3	93	73.814	Takifugu_rubripes
ENSSTOG00000025907	CHD3	98	73.703	ENSTNIG00000012998	chd3	99	73.096	Tetraodon_nigroviridis
ENSSTOG00000025907	CHD3	65	97.619	ENSTBEG00000011454	-	71	97.619	Tupaia_belangeri
ENSSTOG00000025907	CHD3	99	99.383	ENSTTRG00000010295	CHD3	97	99.383	Tursiops_truncatus
ENSSTOG00000025907	CHD3	93	96.952	ENSUAMG00000005475	CHD3	99	96.952	Ursus_americanus
ENSSTOG00000025907	CHD3	57	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSSTOG00000025907	CHD3	96	98.056	ENSVVUG00000028011	CHD3	99	97.922	Vulpes_vulpes
ENSSTOG00000025907	CHD3	98	72.589	ENSXETG00000012991	chd3	92	73.753	Xenopus_tropicalis
ENSSTOG00000025907	CHD3	53	82.976	ENSXCOG00000000809	chd3	96	83.089	Xiphophorus_couchianus
ENSSTOG00000025907	CHD3	81	86.127	ENSXMAG00000016035	chd3	99	86.127	Xiphophorus_maculatus