EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000026833 (Gene tree)
Gene ID: 101959286
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Plus strand
Length: 91188 bases
Position: chrJH393530.1:1876475-1967662
Accession: 101959286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000019441	RRM_1	PF00076.22	1e-32	1	2
ENSSTOP00000019441	RRM_1	PF00076.22	1e-32	2	2
ENSSTOP00000030268	RRM_1	PF00076.22	2.4e-32	1	2
ENSSTOP00000030268	RRM_1	PF00076.22	2.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000031346	PSPC1-202	4902	XM_005338627	ENSSTOP00000030268	523 (aa)	XP_005338684	A0A287D9P7
ENSSTOT00000025219	PSPC1-201	2151	-	ENSSTOP00000019441	393 (aa)	-	I3N4Z5

Gene Model

Click here to download ENSSTOG00000026833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000026833's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000026833	PSPC1	60	75.210	ENSSTOG00000014004	-	80	67.832
ENSSTOG00000026833	PSPC1	74	74.394	ENSSTOG00000015869	NONO	80	67.639

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000026833	PSPC1	100	98.088	ENSG00000121390	PSPC1	100	98.088	Homo_sapiens
ENSSTOG00000026833	PSPC1	82	81.173	ENSAPOG00000015946	pspc1	88	68.763	Acanthochromis_polyacanthus
ENSSTOG00000026833	PSPC1	100	97.897	ENSAMEG00000017420	PSPC1	100	97.897	Ailuropoda_melanoleuca
ENSSTOG00000026833	PSPC1	98	63.868	ENSACIG00000018695	pspc1	87	59.448	Amphilophus_citrinellus
ENSSTOG00000026833	PSPC1	82	80.556	ENSAOCG00000005279	pspc1	88	68.632	Amphiprion_ocellaris
ENSSTOG00000026833	PSPC1	82	80.556	ENSAPEG00000015927	pspc1	90	65.116	Amphiprion_percula
ENSSTOG00000026833	PSPC1	82	67.593	ENSATEG00000004878	pspc1	96	56.023	Anabas_testudineus
ENSSTOG00000026833	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSSTOG00000026833	PSPC1	80	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSSTOG00000026833	PSPC1	73	70.732	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSSTOG00000026833	PSPC1	83	96.626	ENSACAG00000002093	PSPC1	99	84.023	Anolis_carolinensis
ENSSTOG00000026833	PSPC1	100	97.897	ENSANAG00000000059	PSPC1	100	97.897	Aotus_nancymaae
ENSSTOG00000026833	PSPC1	99	64.141	ENSACLG00000027220	pspc1	100	53.860	Astatotilapia_calliptera
ENSSTOG00000026833	PSPC1	98	70.529	ENSAMXG00000036881	pspc1	100	64.088	Astyanax_mexicanus
ENSSTOG00000026833	PSPC1	100	95.619	ENSBTAG00000003934	PSPC1	100	94.857	Bos_taurus
ENSSTOG00000026833	PSPC1	100	97.897	ENSCJAG00000004554	PSPC1	100	97.897	Callithrix_jacchus
ENSSTOG00000026833	PSPC1	100	98.279	ENSCAFG00020002009	PSPC1	100	98.279	Canis_lupus_dingo
ENSSTOG00000026833	PSPC1	100	95.619	ENSCHIG00000016708	PSPC1	100	94.857	Capra_hircus
ENSSTOG00000026833	PSPC1	80	87.915	ENSTSYG00000032882	PSPC1	93	85.273	Carlito_syrichta
ENSSTOG00000026833	PSPC1	100	97.455	ENSCPOG00000000395	PSPC1	100	97.455	Cavia_porcellus
ENSSTOG00000026833	PSPC1	100	97.897	ENSCCAG00000033498	PSPC1	100	97.897	Cebus_capucinus
ENSSTOG00000026833	PSPC1	100	97.706	ENSCATG00000036434	PSPC1	100	97.706	Cercocebus_atys
ENSSTOG00000026833	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSSTOG00000026833	PSPC1	98	96.891	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSSTOG00000026833	PSPC1	99	87.146	ENSCPBG00000020859	PSPC1	99	86.767	Chrysemys_picta_bellii
ENSSTOG00000026833	PSPC1	78	58.766	ENSCSAVG00000003533	-	58	57.655	Ciona_savignyi
ENSSTOG00000026833	PSPC1	67	99.245	ENSCANG00000018948	PSPC1	88	99.245	Colobus_angolensis_palliatus
ENSSTOG00000026833	PSPC1	100	97.323	ENSCGRG00001018368	Pspc1	100	97.323	Cricetulus_griseus_chok1gshd
ENSSTOG00000026833	PSPC1	100	97.323	ENSCGRG00000011724	Pspc1	100	97.323	Cricetulus_griseus_crigri
ENSSTOG00000026833	PSPC1	81	78.616	ENSCVAG00000007679	-	91	63.544	Cyprinodon_variegatus
ENSSTOG00000026833	PSPC1	98	71.355	ENSDARG00000006621	pspc1	100	67.633	Danio_rerio
ENSSTOG00000026833	PSPC1	100	96.941	ENSDNOG00000011078	PSPC1	100	96.941	Dasypus_novemcinctus
ENSSTOG00000026833	PSPC1	100	94.455	ENSDORG00000016050	Pspc1	100	94.455	Dipodomys_ordii
ENSSTOG00000026833	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSSTOG00000026833	PSPC1	82	73.313	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSSTOG00000026833	PSPC1	79	45.833	ENSEBUG00000010133	pspc1	79	48.837	Eptatretus_burgeri
ENSSTOG00000026833	PSPC1	100	97.897	ENSEASG00005000119	PSPC1	100	97.897	Equus_asinus_asinus
ENSSTOG00000026833	PSPC1	100	97.897	ENSECAG00000017286	PSPC1	100	97.897	Equus_caballus
ENSSTOG00000026833	PSPC1	73	93.443	ENSEEUG00000011288	-	100	64.818	Erinaceus_europaeus
ENSSTOG00000026833	PSPC1	98	72.081	ENSELUG00000003746	pspc1	94	71.939	Esox_lucius
ENSSTOG00000026833	PSPC1	100	98.088	ENSFCAG00000027841	PSPC1	100	98.088	Felis_catus
ENSSTOG00000026833	PSPC1	89	94.861	ENSFALG00000008750	PSPC1	99	88.190	Ficedula_albicollis
ENSSTOG00000026833	PSPC1	100	94.646	ENSFDAG00000002617	PSPC1	100	94.646	Fukomys_damarensis
ENSSTOG00000026833	PSPC1	73	82.986	ENSGMOG00000015074	pspc1	95	61.914	Gadus_morhua
ENSSTOG00000026833	PSPC1	99	87.925	ENSGALG00000017142	PSPC1	99	87.170	Gallus_gallus
ENSSTOG00000026833	PSPC1	98	68.782	ENSGAFG00000006327	pspc1	81	68.782	Gambusia_affinis
ENSSTOG00000026833	PSPC1	84	73.112	ENSGACG00000014901	pspc1	98	70.655	Gasterosteus_aculeatus
ENSSTOG00000026833	PSPC1	99	86.957	ENSGAGG00000019164	PSPC1	99	86.578	Gopherus_agassizii
ENSSTOG00000026833	PSPC1	85	72.537	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSSTOG00000026833	PSPC1	100	97.897	ENSGGOG00000003414	PSPC1	100	97.897	Gorilla_gorilla
ENSSTOG00000026833	PSPC1	98	70.918	ENSHBUG00000001139	pspc1	100	63.168	Haplochromis_burtoni
ENSSTOG00000026833	PSPC1	100	96.941	ENSHGLG00000018811	PSPC1	100	96.941	Heterocephalus_glaber_female
ENSSTOG00000026833	PSPC1	89	92.571	ENSHGLG00100007962	PSPC1	100	92.571	Heterocephalus_glaber_male
ENSSTOG00000026833	PSPC1	88	70.690	ENSHCOG00000013251	pspc1	92	65.617	Hippocampus_comes
ENSSTOG00000026833	PSPC1	98	73.333	ENSIPUG00000013192	pspc1	93	71.313	Ictalurus_punctatus
ENSSTOG00000026833	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSSTOG00000026833	PSPC1	88	55.292	ENSKMAG00000013525	-	96	50.857	Kryptolebias_marmoratus
ENSSTOG00000026833	PSPC1	94	72.826	ENSLBEG00000004474	pspc1	78	72.826	Labrus_bergylta
ENSSTOG00000026833	PSPC1	99	76.667	ENSLACG00000010762	PSPC1	99	77.425	Latimeria_chalumnae
ENSSTOG00000026833	PSPC1	88	84.382	ENSLOCG00000010832	pspc1	91	84.382	Lepisosteus_oculatus
ENSSTOG00000026833	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSSTOG00000026833	PSPC1	100	97.706	ENSMFAG00000032728	PSPC1	100	97.706	Macaca_fascicularis
ENSSTOG00000026833	PSPC1	100	97.706	ENSMMUG00000020262	PSPC1	100	97.706	Macaca_mulatta
ENSSTOG00000026833	PSPC1	100	97.706	ENSMNEG00000027401	PSPC1	100	97.706	Macaca_nemestrina
ENSSTOG00000026833	PSPC1	100	98.747	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSSTOG00000026833	PSPC1	85	76.577	ENSMAMG00000004333	pspc1	89	61.925	Mastacembelus_armatus
ENSSTOG00000026833	PSPC1	99	64.141	ENSMZEG00005005726	pspc1	100	53.860	Maylandia_zebra
ENSSTOG00000026833	PSPC1	77	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSSTOG00000026833	PSPC1	98	90.933	ENSMAUG00000021067	Pspc1	99	91.991	Mesocricetus_auratus
ENSSTOG00000026833	PSPC1	100	97.514	ENSMICG00000013970	PSPC1	100	97.514	Microcebus_murinus
ENSSTOG00000026833	PSPC1	100	97.323	ENSMOCG00000006060	Pspc1	100	97.323	Microtus_ochrogaster
ENSSTOG00000026833	PSPC1	89	53.501	ENSMMOG00000004352	pspc1	61	51.754	Mola_mola
ENSSTOG00000026833	PSPC1	98	97.409	ENSMODG00000008029	PSPC1	78	96.495	Monodelphis_domestica
ENSSTOG00000026833	PSPC1	82	77.469	ENSMALG00000008914	pspc1	90	67.012	Monopterus_albus
ENSSTOG00000026833	PSPC1	100	97.328	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.328	Mus_caroli
ENSSTOG00000026833	PSPC1	100	97.519	ENSMUSG00000021938	Pspc1	100	97.519	Mus_musculus
ENSSTOG00000026833	PSPC1	100	97.710	MGP_PahariEiJ_G0030359	Pspc1	100	97.710	Mus_pahari
ENSSTOG00000026833	PSPC1	100	97.710	MGP_SPRETEiJ_G0020232	Pspc1	100	97.710	Mus_spretus
ENSSTOG00000026833	PSPC1	100	97.706	ENSMPUG00000013347	PSPC1	100	97.706	Mustela_putorius_furo
ENSSTOG00000026833	PSPC1	100	96.198	ENSMLUG00000017663	PSPC1	100	96.198	Myotis_lucifugus
ENSSTOG00000026833	PSPC1	100	97.132	ENSNGAG00000011271	Pspc1	100	97.132	Nannospalax_galili
ENSSTOG00000026833	PSPC1	98	65.128	ENSNBRG00000014059	pspc1	92	62.183	Neolamprologus_brichardi
ENSSTOG00000026833	PSPC1	100	97.897	ENSNLEG00000001294	PSPC1	100	97.897	Nomascus_leucogenys
ENSSTOG00000026833	PSPC1	84	95.703	ENSMEUG00000000476	PSPC1	84	95.703	Notamacropus_eugenii
ENSSTOG00000026833	PSPC1	100	85.851	ENSODEG00000007817	-	100	82.042	Octodon_degus
ENSSTOG00000026833	PSPC1	98	88.601	ENSODEG00000019012	-	100	85.633	Octodon_degus
ENSSTOG00000026833	PSPC1	98	71.173	ENSONIG00000012010	pspc1	99	62.659	Oreochromis_niloticus
ENSSTOG00000026833	PSPC1	99	66.794	ENSOANG00000011381	-	99	65.524	Ornithorhynchus_anatinus
ENSSTOG00000026833	PSPC1	76	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSSTOG00000026833	PSPC1	100	98.088	ENSOCUG00000006153	PSPC1	100	98.088	Oryctolagus_cuniculus
ENSSTOG00000026833	PSPC1	82	79.012	ENSORLG00000004232	-	90	63.074	Oryzias_latipes
ENSSTOG00000026833	PSPC1	85	76.786	ENSORLG00020000578	PSPC1	90	65.235	Oryzias_latipes_hni
ENSSTOG00000026833	PSPC1	82	79.321	ENSORLG00015017480	pspc1	80	70.465	Oryzias_latipes_hsok
ENSSTOG00000026833	PSPC1	53	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSSTOG00000026833	PSPC1	100	98.279	ENSOGAG00000012643	PSPC1	100	98.279	Otolemur_garnettii
ENSSTOG00000026833	PSPC1	100	91.048	ENSOARG00000014163	PSPC1	100	91.048	Ovis_aries
ENSSTOG00000026833	PSPC1	89	95.157	ENSPPAG00000009836	PSPC1	99	95.157	Pan_paniscus
ENSSTOG00000026833	PSPC1	100	98.088	ENSPPRG00000008833	PSPC1	100	98.088	Panthera_pardus
ENSSTOG00000026833	PSPC1	100	82.409	ENSPTIG00000016917	PSPC1	100	82.409	Panthera_tigris_altaica
ENSSTOG00000026833	PSPC1	100	97.710	ENSPTRG00000005677	PSPC1	100	97.710	Pan_troglodytes
ENSSTOG00000026833	PSPC1	100	97.897	ENSPANG00000001992	PSPC1	100	97.897	Papio_anubis
ENSSTOG00000026833	PSPC1	83	83.841	ENSPKIG00000003578	pspc1	89	73.849	Paramormyrops_kingsleyae
ENSSTOG00000026833	PSPC1	99	86.817	ENSPSIG00000005168	PSPC1	99	86.441	Pelodiscus_sinensis
ENSSTOG00000026833	PSPC1	78	70.382	ENSPMGG00000015135	pspc1	86	70.288	Periophthalmus_magnuspinnatus
ENSSTOG00000026833	PSPC1	100	97.897	ENSPEMG00000015214	Pspc1	100	97.897	Peromyscus_maniculatus_bairdii
ENSSTOG00000026833	PSPC1	71	44.792	ENSPMAG00000004618	pspc1	88	44.792	Petromyzon_marinus
ENSSTOG00000026833	PSPC1	98	97.662	ENSPCIG00000017680	PSPC1	100	96.552	Phascolarctos_cinereus
ENSSTOG00000026833	PSPC1	94	71.504	ENSPFOG00000003362	pspc1	92	65.731	Poecilia_formosa
ENSSTOG00000026833	PSPC1	97	69.720	ENSPLAG00000011540	pspc1	91	65.731	Poecilia_latipinna
ENSSTOG00000026833	PSPC1	76	68.350	ENSPLAG00000004407	-	53	59.948	Poecilia_latipinna
ENSSTOG00000026833	PSPC1	75	68.581	ENSPMEG00000001025	-	51	60.484	Poecilia_mexicana
ENSSTOG00000026833	PSPC1	97	69.211	ENSPMEG00000008322	pspc1	91	65.331	Poecilia_mexicana
ENSSTOG00000026833	PSPC1	97	68.957	ENSPREG00000007786	pspc1	91	65.731	Poecilia_reticulata
ENSSTOG00000026833	PSPC1	100	97.514	ENSPPYG00000005186	PSPC1	100	97.514	Pongo_abelii
ENSSTOG00000026833	PSPC1	73	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSSTOG00000026833	PSPC1	98	98.446	ENSPCOG00000014364	PSPC1	100	94.264	Propithecus_coquereli
ENSSTOG00000026833	PSPC1	98	96.632	ENSPVAG00000005036	PSPC1	100	93.690	Pteropus_vampyrus
ENSSTOG00000026833	PSPC1	99	64.646	ENSPNYG00000008893	pspc1	100	54.044	Pundamilia_nyererei
ENSSTOG00000026833	PSPC1	99	67.039	ENSPNAG00000016511	pspc1	92	71.605	Pygocentrus_nattereri
ENSSTOG00000026833	PSPC1	100	97.514	ENSRNOG00000020782	Pspc1	100	97.514	Rattus_norvegicus
ENSSTOG00000026833	PSPC1	93	98.152	ENSRBIG00000036057	PSPC1	100	98.152	Rhinopithecus_bieti
ENSSTOG00000026833	PSPC1	100	97.897	ENSRROG00000036334	PSPC1	100	97.897	Rhinopithecus_roxellana
ENSSTOG00000026833	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	91	94.624	Saimiri_boliviensis_boliviensis
ENSSTOG00000026833	PSPC1	100	91.238	ENSSHAG00000004696	PSPC1	100	91.238	Sarcophilus_harrisii
ENSSTOG00000026833	PSPC1	83	85.583	ENSSFOG00015001395	pspc1	100	76.151	Scleropages_formosus
ENSSTOG00000026833	PSPC1	92	71.622	ENSSMAG00000001761	pspc1	86	75.216	Scophthalmus_maximus
ENSSTOG00000026833	PSPC1	82	81.173	ENSSDUG00000010651	pspc1	88	67.671	Seriola_dumerili
ENSSTOG00000026833	PSPC1	83	74.154	ENSSLDG00000004284	pspc1	86	59.831	Seriola_lalandi_dorsalis
ENSSTOG00000026833	PSPC1	100	88.719	ENSSARG00000000888	PSPC1	100	89.484	Sorex_araneus
ENSSTOG00000026833	PSPC1	81	66.044	ENSSPUG00000001136	-	53	61.625	Sphenodon_punctatus
ENSSTOG00000026833	PSPC1	99	75.000	ENSSPUG00000008550	PSPC1	99	75.816	Sphenodon_punctatus
ENSSTOG00000026833	PSPC1	86	78.761	ENSSPAG00000001921	pspc1	91	65.936	Stegastes_partitus
ENSSTOG00000026833	PSPC1	100	96.374	ENSSSCG00000009569	PSPC1	100	96.374	Sus_scrofa
ENSSTOG00000026833	PSPC1	89	94.861	ENSTGUG00000011295	PSPC1	100	94.861	Taeniopygia_guttata
ENSSTOG00000026833	PSPC1	82	71.296	ENSTRUG00000011335	pspc1	77	66.019	Takifugu_rubripes
ENSSTOG00000026833	PSPC1	84	72.727	ENSTNIG00000010358	pspc1	88	62.796	Tetraodon_nigroviridis
ENSSTOG00000026833	PSPC1	98	86.010	ENSTBEG00000002361	PSPC1	100	75.717	Tupaia_belangeri
ENSSTOG00000026833	PSPC1	100	96.565	ENSTTRG00000003343	PSPC1	100	96.565	Tursiops_truncatus
ENSSTOG00000026833	PSPC1	89	98.006	ENSUAMG00000012309	PSPC1	100	98.006	Ursus_americanus
ENSSTOG00000026833	PSPC1	93	98.152	ENSUMAG00000013993	PSPC1	100	98.152	Ursus_maritimus
ENSSTOG00000026833	PSPC1	76	99.499	ENSVPAG00000010029	PSPC1	100	99.499	Vicugna_pacos
ENSSTOG00000026833	PSPC1	100	98.279	ENSVVUG00000006414	PSPC1	100	98.705	Vulpes_vulpes
ENSSTOG00000026833	PSPC1	98	68.528	ENSXCOG00000017438	pspc1	84	73.521	Xiphophorus_couchianus
ENSSTOG00000026833	PSPC1	98	68.367	ENSXMAG00000007929	pspc1	84	73.803	Xiphophorus_maculatus