EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000026870 (Gene tree)
Gene ID: 101975547
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 6605 bases
Position: chrJH393520.1:1545790-1552394
Accession: 101975547
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000015145	LSM	PF01423.22	6.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000029767	LSM1-201	1556	XM_005338384	ENSSTOP00000015145	82 (aa)	XP_021590969	I3MSQ0

Gene Model

Click here to download ENSSTOG00000026870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000026870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000026870	LSM1	90	34.667	ENSSTOG00000009039	LSM8	78	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000026870	LSM1	94	100.000	ENSG00000175324	LSM1	89	97.436	Homo_sapiens
ENSSTOG00000026870	LSM1	100	87.952	ENSAPOG00000010833	lsm1	62	87.952	Acanthochromis_polyacanthus
ENSSTOG00000026870	LSM1	94	100.000	ENSAMEG00000011141	LSM1	58	100.000	Ailuropoda_melanoleuca
ENSSTOG00000026870	LSM1	99	90.123	ENSACIG00000019593	lsm1	68	90.123	Amphilophus_citrinellus
ENSSTOG00000026870	LSM1	100	87.952	ENSAOCG00000017096	lsm1	62	87.952	Amphiprion_ocellaris
ENSSTOG00000026870	LSM1	96	92.405	ENSAOCG00000017997	-	62	92.405	Amphiprion_ocellaris
ENSSTOG00000026870	LSM1	100	87.952	ENSAPEG00000011669	lsm1	62	87.952	Amphiprion_percula
ENSSTOG00000026870	LSM1	100	87.952	ENSATEG00000022266	lsm1	62	87.952	Anabas_testudineus
ENSSTOG00000026870	LSM1	94	100.000	ENSANAG00000027785	LSM1	89	97.436	Aotus_nancymaae
ENSSTOG00000026870	LSM1	94	92.208	ENSACLG00000011400	lsm1	58	92.208	Astatotilapia_calliptera
ENSSTOG00000026870	LSM1	94	96.104	ENSAMXG00000005441	lsm1	58	96.104	Astyanax_mexicanus
ENSSTOG00000026870	LSM1	94	100.000	ENSBTAG00000001612	LSM1	58	100.000	Bos_taurus
ENSSTOG00000026870	LSM1	91	61.333	WBGene00003076	lsm-1	60	61.333	Caenorhabditis_elegans
ENSSTOG00000026870	LSM1	94	100.000	ENSCJAG00000048015	LSM1	89	97.436	Callithrix_jacchus
ENSSTOG00000026870	LSM1	94	100.000	ENSCAFG00000006113	LSM1	58	100.000	Canis_familiaris
ENSSTOG00000026870	LSM1	94	100.000	ENSCAFG00020001822	LSM1	58	100.000	Canis_lupus_dingo
ENSSTOG00000026870	LSM1	94	100.000	ENSCHIG00000013194	LSM1	58	100.000	Capra_hircus
ENSSTOG00000026870	LSM1	94	100.000	ENSTSYG00000010394	LSM1	89	97.436	Carlito_syrichta
ENSSTOG00000026870	LSM1	94	100.000	ENSCPOG00000032671	LSM1	58	100.000	Cavia_porcellus
ENSSTOG00000026870	LSM1	94	100.000	ENSCCAG00000037171	LSM1	89	97.436	Cebus_capucinus
ENSSTOG00000026870	LSM1	94	100.000	ENSCATG00000020377	LSM1	89	97.436	Cercocebus_atys
ENSSTOG00000026870	LSM1	94	100.000	ENSCLAG00000001137	LSM1	58	100.000	Chinchilla_lanigera
ENSSTOG00000026870	LSM1	94	100.000	ENSCSAG00000015485	LSM1	58	100.000	Chlorocebus_sabaeus
ENSSTOG00000026870	LSM1	94	100.000	ENSCHOG00000006030	LSM1	58	100.000	Choloepus_hoffmanni
ENSSTOG00000026870	LSM1	94	84.416	ENSCING00000013536	-	58	84.416	Ciona_intestinalis
ENSSTOG00000026870	LSM1	94	100.000	ENSCANG00000019173	LSM1	89	97.436	Colobus_angolensis_palliatus
ENSSTOG00000026870	LSM1	94	100.000	ENSCGRG00001024560	-	58	100.000	Cricetulus_griseus_chok1gshd
ENSSTOG00000026870	LSM1	87	90.141	ENSCGRG00001002259	-	62	90.141	Cricetulus_griseus_chok1gshd
ENSSTOG00000026870	LSM1	94	100.000	ENSCGRG00000006554	-	58	100.000	Cricetulus_griseus_crigri
ENSSTOG00000026870	LSM1	87	90.141	ENSCGRG00000013603	-	62	90.141	Cricetulus_griseus_crigri
ENSSTOG00000026870	LSM1	100	87.952	ENSCSEG00000010570	lsm1	57	87.952	Cynoglossus_semilaevis
ENSSTOG00000026870	LSM1	100	86.747	ENSCSEG00000008319	lsm1	57	86.747	Cynoglossus_semilaevis
ENSSTOG00000026870	LSM1	100	86.747	ENSCVAG00000003871	lsm1	62	86.747	Cyprinodon_variegatus
ENSSTOG00000026870	LSM1	94	96.104	ENSDARG00000043177	lsm1	58	96.104	Danio_rerio
ENSSTOG00000026870	LSM1	94	98.701	ENSDNOG00000032911	-	58	98.701	Dasypus_novemcinctus
ENSSTOG00000026870	LSM1	94	76.623	ENSDNOG00000046620	-	65	76.623	Dasypus_novemcinctus
ENSSTOG00000026870	LSM1	94	100.000	ENSDNOG00000046387	-	58	100.000	Dasypus_novemcinctus
ENSSTOG00000026870	LSM1	94	92.208	ENSDNOG00000030989	-	57	92.208	Dasypus_novemcinctus
ENSSTOG00000026870	LSM1	94	100.000	ENSDORG00000028172	Lsm1	58	100.000	Dipodomys_ordii
ENSSTOG00000026870	LSM1	98	72.500	FBgn0261067	LSm1	58	72.500	Drosophila_melanogaster
ENSSTOG00000026870	LSM1	94	100.000	ENSEASG00005016677	LSM1	58	100.000	Equus_asinus_asinus
ENSSTOG00000026870	LSM1	94	100.000	ENSECAG00000010461	LSM1	58	100.000	Equus_caballus
ENSSTOG00000026870	LSM1	94	100.000	ENSEEUG00000015181	LSM1	78	100.000	Erinaceus_europaeus
ENSSTOG00000026870	LSM1	94	94.805	ENSELUG00000002322	lsm1	58	94.805	Esox_lucius
ENSSTOG00000026870	LSM1	94	96.104	ENSELUG00000023374	lsm1	58	96.104	Esox_lucius
ENSSTOG00000026870	LSM1	94	100.000	ENSFCAG00000039335	LSM1	89	97.436	Felis_catus
ENSSTOG00000026870	LSM1	76	98.387	ENSFALG00000006723	LSM1	53	98.387	Ficedula_albicollis
ENSSTOG00000026870	LSM1	94	100.000	ENSFDAG00000007658	LSM1	58	100.000	Fukomys_damarensis
ENSSTOG00000026870	LSM1	100	86.747	ENSFHEG00000009556	lsm1	62	86.747	Fundulus_heteroclitus
ENSSTOG00000026870	LSM1	94	92.208	ENSGMOG00000016651	lsm1	57	92.208	Gadus_morhua
ENSSTOG00000026870	LSM1	94	98.701	ENSGALG00000003245	LSM1	58	98.701	Gallus_gallus
ENSSTOG00000026870	LSM1	100	86.747	ENSGAFG00000011355	lsm1	62	86.747	Gambusia_affinis
ENSSTOG00000026870	LSM1	94	92.208	ENSGACG00000011763	lsm1	57	92.208	Gasterosteus_aculeatus
ENSSTOG00000026870	LSM1	94	97.403	ENSGAGG00000024065	LSM1	58	97.403	Gopherus_agassizii
ENSSTOG00000026870	LSM1	94	100.000	ENSGGOG00000022658	LSM1	89	97.436	Gorilla_gorilla
ENSSTOG00000026870	LSM1	94	92.208	ENSHBUG00000010897	lsm1	58	92.208	Haplochromis_burtoni
ENSSTOG00000026870	LSM1	94	75.325	ENSHGLG00000017574	-	55	75.325	Heterocephalus_glaber_female
ENSSTOG00000026870	LSM1	94	100.000	ENSHGLG00000005711	LSM1	58	100.000	Heterocephalus_glaber_female
ENSSTOG00000026870	LSM1	94	75.325	ENSHGLG00100012152	-	55	75.325	Heterocephalus_glaber_male
ENSSTOG00000026870	LSM1	94	100.000	ENSHGLG00100017660	LSM1	58	100.000	Heterocephalus_glaber_male
ENSSTOG00000026870	LSM1	100	86.747	ENSHCOG00000017233	lsm1	62	86.747	Hippocampus_comes
ENSSTOG00000026870	LSM1	100	90.361	ENSIPUG00000002312	LSM1	62	90.361	Ictalurus_punctatus
ENSSTOG00000026870	LSM1	94	100.000	ENSJJAG00000014605	-	58	100.000	Jaculus_jaculus
ENSSTOG00000026870	LSM1	100	87.952	ENSKMAG00000003016	lsm1	62	87.952	Kryptolebias_marmoratus
ENSSTOG00000026870	LSM1	100	87.952	ENSLBEG00000022352	lsm1	62	87.952	Labrus_bergylta
ENSSTOG00000026870	LSM1	80	92.424	ENSLACG00000010947	LSM1	55	92.424	Latimeria_chalumnae
ENSSTOG00000026870	LSM1	94	97.403	ENSLOCG00000015149	lsm1	58	97.403	Lepisosteus_oculatus
ENSSTOG00000026870	LSM1	94	100.000	ENSLAFG00000003534	LSM1	58	100.000	Loxodonta_africana
ENSSTOG00000026870	LSM1	94	100.000	ENSMFAG00000032661	LSM1	89	97.436	Macaca_fascicularis
ENSSTOG00000026870	LSM1	94	100.000	ENSMLEG00000034535	LSM1	89	97.436	Mandrillus_leucophaeus
ENSSTOG00000026870	LSM1	100	87.952	ENSMAMG00000007464	lsm1	62	87.952	Mastacembelus_armatus
ENSSTOG00000026870	LSM1	94	92.208	ENSMZEG00005010321	lsm1	58	92.208	Maylandia_zebra
ENSSTOG00000026870	LSM1	94	98.701	ENSMGAG00000002125	LSM1	58	98.701	Meleagris_gallopavo
ENSSTOG00000026870	LSM1	94	100.000	ENSMICG00000030726	LSM1	89	97.436	Microcebus_murinus
ENSSTOG00000026870	LSM1	94	100.000	ENSMOCG00000022817	Lsm1	58	100.000	Microtus_ochrogaster
ENSSTOG00000026870	LSM1	100	87.952	ENSMMOG00000015466	lsm1	62	87.952	Mola_mola
ENSSTOG00000026870	LSM1	94	98.701	ENSMODG00000010732	-	58	98.701	Monodelphis_domestica
ENSSTOG00000026870	LSM1	99	91.358	ENSMALG00000001478	lsm1	86	91.358	Monopterus_albus
ENSSTOG00000026870	LSM1	94	100.000	MGP_CAROLIEiJ_G0030930	Lsm1	58	100.000	Mus_caroli
ENSSTOG00000026870	LSM1	94	100.000	ENSMUSG00000037296	Lsm1	91	97.436	Mus_musculus
ENSSTOG00000026870	LSM1	94	100.000	MGP_PahariEiJ_G0021400	Lsm1	58	100.000	Mus_pahari
ENSSTOG00000026870	LSM1	94	100.000	MGP_SPRETEiJ_G0032049	Lsm1	58	100.000	Mus_spretus
ENSSTOG00000026870	LSM1	94	100.000	ENSMPUG00000009883	LSM1	58	100.000	Mustela_putorius_furo
ENSSTOG00000026870	LSM1	94	100.000	ENSMLUG00000003734	LSM1	58	100.000	Myotis_lucifugus
ENSSTOG00000026870	LSM1	94	98.701	ENSNGAG00000003753	Lsm1	58	98.701	Nannospalax_galili
ENSSTOG00000026870	LSM1	99	90.123	ENSNBRG00000017370	lsm1	70	90.123	Neolamprologus_brichardi
ENSSTOG00000026870	LSM1	94	100.000	ENSNLEG00000029390	LSM1	89	97.436	Nomascus_leucogenys
ENSSTOG00000026870	LSM1	94	98.701	ENSMEUG00000014077	LSM1	58	98.701	Notamacropus_eugenii
ENSSTOG00000026870	LSM1	74	100.000	ENSOPRG00000000333	LSM1	52	100.000	Ochotona_princeps
ENSSTOG00000026870	LSM1	94	100.000	ENSODEG00000004834	LSM1	58	100.000	Octodon_degus
ENSSTOG00000026870	LSM1	94	92.208	ENSONIG00000010782	lsm1	58	92.208	Oreochromis_niloticus
ENSSTOG00000026870	LSM1	94	98.701	ENSOANG00000003256	LSM1	58	98.701	Ornithorhynchus_anatinus
ENSSTOG00000026870	LSM1	94	100.000	ENSOCUG00000015399	LSM1	58	100.000	Oryctolagus_cuniculus
ENSSTOG00000026870	LSM1	94	92.208	ENSORLG00000030288	lsm1	58	92.208	Oryzias_latipes
ENSSTOG00000026870	LSM1	94	92.208	ENSORLG00020003941	lsm1	58	92.208	Oryzias_latipes_hni
ENSSTOG00000026870	LSM1	94	92.208	ENSORLG00020006213	-	50	92.208	Oryzias_latipes_hni
ENSSTOG00000026870	LSM1	94	92.208	ENSORLG00015018350	lsm1	58	92.208	Oryzias_latipes_hsok
ENSSTOG00000026870	LSM1	94	92.208	ENSOMEG00000012454	lsm1	58	92.208	Oryzias_melastigma
ENSSTOG00000026870	LSM1	94	100.000	ENSOGAG00000015161	LSM1	58	100.000	Otolemur_garnettii
ENSSTOG00000026870	LSM1	94	100.000	ENSOARG00000001317	LSM1	58	100.000	Ovis_aries
ENSSTOG00000026870	LSM1	94	100.000	ENSPPAG00000032279	LSM1	89	97.436	Pan_paniscus
ENSSTOG00000026870	LSM1	94	100.000	ENSPPRG00000014172	-	89	97.436	Panthera_pardus
ENSSTOG00000026870	LSM1	94	100.000	ENSPTIG00000010289	LSM1	89	97.436	Panthera_tigris_altaica
ENSSTOG00000026870	LSM1	94	100.000	ENSPTRG00000020169	LSM1	89	97.436	Pan_troglodytes
ENSSTOG00000026870	LSM1	94	100.000	ENSPANG00000008814	LSM1	89	97.436	Papio_anubis
ENSSTOG00000026870	LSM1	94	93.506	ENSPKIG00000019409	LSM1	57	93.506	Paramormyrops_kingsleyae
ENSSTOG00000026870	LSM1	94	98.701	ENSPKIG00000001839	lsm1	58	98.701	Paramormyrops_kingsleyae
ENSSTOG00000026870	LSM1	89	87.671	ENSPSIG00000012563	LSM1	55	87.671	Pelodiscus_sinensis
ENSSTOG00000026870	LSM1	99	90.123	ENSPMGG00000022999	lsm1	77	90.123	Periophthalmus_magnuspinnatus
ENSSTOG00000026870	LSM1	70	96.491	ENSPMAG00000002671	lsm1	50	96.491	Petromyzon_marinus
ENSSTOG00000026870	LSM1	94	98.701	ENSPCIG00000008880	LSM1	58	98.701	Phascolarctos_cinereus
ENSSTOG00000026870	LSM1	100	86.747	ENSPFOG00000016029	lsm1	62	86.747	Poecilia_formosa
ENSSTOG00000026870	LSM1	100	86.747	ENSPLAG00000007879	lsm1	62	86.747	Poecilia_latipinna
ENSSTOG00000026870	LSM1	100	86.747	ENSPMEG00000023550	lsm1	62	86.747	Poecilia_mexicana
ENSSTOG00000026870	LSM1	100	86.747	ENSPREG00000009574	lsm1	62	86.747	Poecilia_reticulata
ENSSTOG00000026870	LSM1	94	100.000	ENSPPYG00000018521	LSM1	58	100.000	Pongo_abelii
ENSSTOG00000026870	LSM1	94	100.000	ENSPCOG00000020901	-	89	97.436	Propithecus_coquereli
ENSSTOG00000026870	LSM1	94	100.000	ENSPVAG00000006016	LSM1	58	100.000	Pteropus_vampyrus
ENSSTOG00000026870	LSM1	94	92.208	ENSPNYG00000018067	lsm1	58	92.208	Pundamilia_nyererei
ENSSTOG00000026870	LSM1	94	96.104	ENSPNAG00000013707	lsm1	58	96.104	Pygocentrus_nattereri
ENSSTOG00000026870	LSM1	94	98.701	ENSRNOG00000015375	Lsm1	58	98.701	Rattus_norvegicus
ENSSTOG00000026870	LSM1	94	100.000	ENSRBIG00000027449	LSM1	89	97.436	Rhinopithecus_bieti
ENSSTOG00000026870	LSM1	94	100.000	ENSRROG00000036074	LSM1	89	97.436	Rhinopithecus_roxellana
ENSSTOG00000026870	LSM1	94	98.701	ENSSHAG00000017260	LSM1	58	98.701	Sarcophilus_harrisii
ENSSTOG00000026870	LSM1	94	98.701	ENSSFOG00015019528	lsm1	58	98.701	Scleropages_formosus
ENSSTOG00000026870	LSM1	100	87.952	ENSSMAG00000004930	lsm1	62	87.952	Scophthalmus_maximus
ENSSTOG00000026870	LSM1	94	92.208	ENSSDUG00000021823	lsm1	58	92.208	Seriola_dumerili
ENSSTOG00000026870	LSM1	94	92.208	ENSSLDG00000012154	lsm1	58	92.208	Seriola_lalandi_dorsalis
ENSSTOG00000026870	LSM1	94	97.403	ENSSPUG00000014878	LSM1	58	97.403	Sphenodon_punctatus
ENSSTOG00000026870	LSM1	100	87.952	ENSSPAG00000020548	lsm1	62	87.952	Stegastes_partitus
ENSSTOG00000026870	LSM1	94	100.000	ENSSSCG00000039058	LSM1	58	100.000	Sus_scrofa
ENSSTOG00000026870	LSM1	94	97.403	ENSTGUG00000004793	LSM1	58	97.403	Taeniopygia_guttata
ENSSTOG00000026870	LSM1	94	92.208	ENSTRUG00000025239	lsm1	58	92.208	Takifugu_rubripes
ENSSTOG00000026870	LSM1	94	92.208	ENSTNIG00000004055	lsm1	58	92.208	Tetraodon_nigroviridis
ENSSTOG00000026870	LSM1	74	98.361	ENSTBEG00000015884	LSM1	52	98.361	Tupaia_belangeri
ENSSTOG00000026870	LSM1	94	100.000	ENSTTRG00000004482	LSM1	58	100.000	Tursiops_truncatus
ENSSTOG00000026870	LSM1	94	100.000	ENSUAMG00000004103	LSM1	58	100.000	Ursus_americanus
ENSSTOG00000026870	LSM1	94	100.000	ENSUMAG00000009132	LSM1	58	100.000	Ursus_maritimus
ENSSTOG00000026870	LSM1	94	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSSTOG00000026870	LSM1	94	100.000	ENSVVUG00000020191	LSM1	58	100.000	Vulpes_vulpes
ENSSTOG00000026870	LSM1	99	70.370	ENSVVUG00000014880	-	86	70.370	Vulpes_vulpes
ENSSTOG00000026870	LSM1	94	93.827	ENSXETG00000009004	lsm1	59	93.827	Xenopus_tropicalis
ENSSTOG00000026870	LSM1	100	86.747	ENSXCOG00000015631	lsm1	62	86.747	Xiphophorus_couchianus
ENSSTOG00000026870	LSM1	100	86.747	ENSXMAG00000026637	lsm1	62	86.747	Xiphophorus_maculatus