EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000027833 (Gene tree)
Gene ID: 101962492
Gene Symbol: PRPF4
Alias: HPRP4|HPRP4P|PRP4|Prp4p|SNRNP60
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 15689 bases
Position: chrJH393369.1:305392-321080
Accession: 101962492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000022510	PRP4	PF08799.11	4.1e-14	1	1
ENSSTOP00000025005	PRP4	PF08799.11	4.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000033383	PRPF4-201	3292	XM_005329689	ENSSTOP00000025005	521 (aa)	XP_005329746	A0A287CUJ8
ENSSTOT00000024214	PRPF4-202	1503	-	ENSSTOP00000022510	500 (aa)	-	I3NDR3

Gene Model

Click here to download ENSSTOG00000027833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000027833's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000027833	PRPF4	56	30.625	ENSSTOG00000002638	POC1A	81	30.625
ENSSTOG00000027833	PRPF4	55	31.000	ENSSTOG00000012964	TBL3	66	31.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000027833	PRPF4	100	99.040	ENSG00000136875	PRPF4	100	99.040	Homo_sapiens
ENSSTOG00000027833	PRPF4	96	76.987	ENSAPOG00000014132	prpf4	98	76.987	Acanthochromis_polyacanthus
ENSSTOG00000027833	PRPF4	100	99.232	ENSAMEG00000013048	PRPF4	98	99.232	Ailuropoda_melanoleuca
ENSSTOG00000027833	PRPF4	96	77.183	ENSACIG00000005579	prpf4	99	77.183	Amphilophus_citrinellus
ENSSTOG00000027833	PRPF4	96	76.436	ENSAOCG00000005457	prpf4	99	76.436	Amphiprion_ocellaris
ENSSTOG00000027833	PRPF4	96	76.238	ENSAPEG00000000776	prpf4	99	76.238	Amphiprion_percula
ENSSTOG00000027833	PRPF4	96	76.786	ENSATEG00000023013	prpf4	99	76.786	Anabas_testudineus
ENSSTOG00000027833	PRPF4	100	88.676	ENSAPLG00000006534	PRPF4	97	88.676	Anas_platyrhynchos
ENSSTOG00000027833	PRPF4	100	90.057	ENSACAG00000015110	PRPF4	100	90.057	Anolis_carolinensis
ENSSTOG00000027833	PRPF4	100	99.424	ENSANAG00000022464	PRPF4	96	99.424	Aotus_nancymaae
ENSSTOG00000027833	PRPF4	96	76.984	ENSACLG00000019031	prpf4	99	76.984	Astatotilapia_calliptera
ENSSTOG00000027833	PRPF4	97	67.073	ENSAMXG00000006756	prpf4	99	73.267	Astyanax_mexicanus
ENSSTOG00000027833	PRPF4	100	98.464	ENSBTAG00000004571	PRPF4	100	98.464	Bos_taurus
ENSSTOG00000027833	PRPF4	90	44.211	WBGene00007972	prp-4	96	44.211	Caenorhabditis_elegans
ENSSTOG00000027833	PRPF4	100	99.234	ENSCJAG00000017856	PRPF4	100	99.234	Callithrix_jacchus
ENSSTOG00000027833	PRPF4	100	99.232	ENSCAFG00000003224	PRPF4	97	99.232	Canis_familiaris
ENSSTOG00000027833	PRPF4	100	99.232	ENSCAFG00020022637	PRPF4	100	99.232	Canis_lupus_dingo
ENSSTOG00000027833	PRPF4	100	98.659	ENSCHIG00000024648	-	100	98.659	Capra_hircus
ENSSTOG00000027833	PRPF4	100	99.040	ENSTSYG00000010366	PRPF4	100	99.040	Carlito_syrichta
ENSSTOG00000027833	PRPF4	88	88.305	ENSCAPG00000008935	PRPF4	97	88.305	Cavia_aperea
ENSSTOG00000027833	PRPF4	100	92.131	ENSCPOG00000014729	-	100	92.131	Cavia_porcellus
ENSSTOG00000027833	PRPF4	100	98.656	ENSCPOG00000010747	-	100	98.656	Cavia_porcellus
ENSSTOG00000027833	PRPF4	100	99.232	ENSCCAG00000028990	PRPF4	100	99.232	Cebus_capucinus
ENSSTOG00000027833	PRPF4	100	99.040	ENSCATG00000021552	PRPF4	100	99.040	Cercocebus_atys
ENSSTOG00000027833	PRPF4	100	98.848	ENSCLAG00000013448	PRPF4	100	98.848	Chinchilla_lanigera
ENSSTOG00000027833	PRPF4	87	96.018	ENSCHOG00000007233	PRPF4	100	96.018	Choloepus_hoffmanni
ENSSTOG00000027833	PRPF4	99	90.874	ENSCPBG00000019136	PRPF4	74	90.874	Chrysemys_picta_bellii
ENSSTOG00000027833	PRPF4	96	59.449	ENSCING00000001299	-	97	58.812	Ciona_intestinalis
ENSSTOG00000027833	PRPF4	96	57.341	ENSCSAVG00000009178	-	99	58.658	Ciona_savignyi
ENSSTOG00000027833	PRPF4	100	99.232	ENSCANG00000003246	PRPF4	100	99.232	Colobus_angolensis_palliatus
ENSSTOG00000027833	PRPF4	100	99.040	ENSCGRG00001016992	Prpf4	100	99.040	Cricetulus_griseus_chok1gshd
ENSSTOG00000027833	PRPF4	100	99.040	ENSCGRG00000017560	Prpf4	100	99.040	Cricetulus_griseus_crigri
ENSSTOG00000027833	PRPF4	97	75.644	ENSCSEG00000020451	prpf4	99	75.644	Cynoglossus_semilaevis
ENSSTOG00000027833	PRPF4	97	79.604	ENSDARG00000067639	prpf4	99	79.604	Danio_rerio
ENSSTOG00000027833	PRPF4	100	98.659	ENSDNOG00000013203	PRPF4	100	98.659	Dasypus_novemcinctus
ENSSTOG00000027833	PRPF4	100	99.040	ENSDORG00000026275	Prpf4	100	99.040	Dipodomys_ordii
ENSSTOG00000027833	PRPF4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
ENSSTOG00000027833	PRPF4	100	96.558	ENSETEG00000020389	PRPF4	100	96.558	Echinops_telfairi
ENSSTOG00000027833	PRPF4	95	73.041	ENSEBUG00000015229	prpf4	86	73.502	Eptatretus_burgeri
ENSSTOG00000027833	PRPF4	100	99.424	ENSEASG00005022678	PRPF4	100	99.424	Equus_asinus_asinus
ENSSTOG00000027833	PRPF4	100	99.424	ENSECAG00000007072	PRPF4	100	99.424	Equus_caballus
ENSSTOG00000027833	PRPF4	100	78.166	ENSEEUG00000007480	PRPF4	100	78.166	Erinaceus_europaeus
ENSSTOG00000027833	PRPF4	97	80.396	ENSELUG00000007510	prpf4	99	80.396	Esox_lucius
ENSSTOG00000027833	PRPF4	100	99.234	ENSFCAG00000005514	PRPF4	100	99.234	Felis_catus
ENSSTOG00000027833	PRPF4	98	87.919	ENSFALG00000005423	PRPF4	90	85.376	Ficedula_albicollis
ENSSTOG00000027833	PRPF4	100	98.656	ENSFDAG00000005839	PRPF4	100	98.656	Fukomys_damarensis
ENSSTOG00000027833	PRPF4	96	76.190	ENSFHEG00000001300	prpf4	99	76.190	Fundulus_heteroclitus
ENSSTOG00000027833	PRPF4	98	89.804	ENSGALG00000008857	PRPF4	95	89.804	Gallus_gallus
ENSSTOG00000027833	PRPF4	67	71.176	ENSGAFG00000012164	prpf4	70	71.176	Gambusia_affinis
ENSSTOG00000027833	PRPF4	96	69.841	ENSGACG00000015476	prpf4	99	69.048	Gasterosteus_aculeatus
ENSSTOG00000027833	PRPF4	99	90.680	ENSGAGG00000025029	PRPF4	95	90.680	Gopherus_agassizii
ENSSTOG00000027833	PRPF4	100	99.040	ENSGGOG00000006943	PRPF4	100	99.040	Gorilla_gorilla
ENSSTOG00000027833	PRPF4	96	76.786	ENSHBUG00000000562	prpf4	99	76.786	Haplochromis_burtoni
ENSSTOG00000027833	PRPF4	100	80.038	ENSHGLG00000003838	-	100	80.038	Heterocephalus_glaber_female
ENSSTOG00000027833	PRPF4	100	98.656	ENSHGLG00000015191	PRPF4	100	98.656	Heterocephalus_glaber_female
ENSSTOG00000027833	PRPF4	100	81.644	ENSHGLG00000016628	-	100	82.409	Heterocephalus_glaber_female
ENSSTOG00000027833	PRPF4	100	80.038	ENSHGLG00100005571	-	100	80.038	Heterocephalus_glaber_male
ENSSTOG00000027833	PRPF4	97	78.614	ENSIPUG00000017956	PRPF4	99	78.614	Ictalurus_punctatus
ENSSTOG00000027833	PRPF4	100	99.040	ENSJJAG00000008838	Prpf4	100	99.040	Jaculus_jaculus
ENSSTOG00000027833	PRPF4	96	76.587	ENSKMAG00000013236	prpf4	99	76.587	Kryptolebias_marmoratus
ENSSTOG00000027833	PRPF4	96	75.896	ENSLBEG00000020611	prpf4	99	75.896	Labrus_bergylta
ENSSTOG00000027833	PRPF4	99	80.539	ENSLACG00000016317	PRPF4	99	80.539	Latimeria_chalumnae
ENSSTOG00000027833	PRPF4	97	81.584	ENSLOCG00000000581	prpf4	99	81.584	Lepisosteus_oculatus
ENSSTOG00000027833	PRPF4	100	98.467	ENSLAFG00000018225	PRPF4	100	98.467	Loxodonta_africana
ENSSTOG00000027833	PRPF4	100	98.848	ENSMFAG00000039397	PRPF4	100	98.848	Macaca_fascicularis
ENSSTOG00000027833	PRPF4	100	99.040	ENSMMUG00000005844	PRPF4	100	99.040	Macaca_mulatta
ENSSTOG00000027833	PRPF4	100	88.676	ENSMNEG00000033737	PRPF4	100	88.676	Macaca_nemestrina
ENSSTOG00000027833	PRPF4	100	99.040	ENSMLEG00000040284	PRPF4	100	99.040	Mandrillus_leucophaeus
ENSSTOG00000027833	PRPF4	97	76.331	ENSMAMG00000020141	prpf4	99	76.331	Mastacembelus_armatus
ENSSTOG00000027833	PRPF4	96	76.984	ENSMZEG00005023205	prpf4	99	76.984	Maylandia_zebra
ENSSTOG00000027833	PRPF4	99	88.077	ENSMGAG00000001796	PRPF4	97	88.077	Meleagris_gallopavo
ENSSTOG00000027833	PRPF4	100	98.656	ENSMAUG00000018022	Prpf4	100	98.656	Mesocricetus_auratus
ENSSTOG00000027833	PRPF4	100	98.464	ENSMICG00000015022	PRPF4	100	98.276	Microcebus_murinus
ENSSTOG00000027833	PRPF4	100	98.848	ENSMOCG00000018273	Prpf4	100	98.848	Microtus_ochrogaster
ENSSTOG00000027833	PRPF4	97	75.248	ENSMMOG00000021177	prpf4	99	75.248	Mola_mola
ENSSTOG00000027833	PRPF4	100	94.646	ENSMODG00000025096	-	97	94.646	Monodelphis_domestica
ENSSTOG00000027833	PRPF4	100	94.837	ENSMODG00000004444	-	100	94.837	Monodelphis_domestica
ENSSTOG00000027833	PRPF4	96	76.786	ENSMALG00000013624	prpf4	99	76.786	Monopterus_albus
ENSSTOG00000027833	PRPF4	100	98.848	MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	Mus_caroli
ENSSTOG00000027833	PRPF4	100	98.848	ENSMUSG00000066148	Prpf4	100	98.848	Mus_musculus
ENSSTOG00000027833	PRPF4	100	98.656	MGP_PahariEiJ_G0028413	Prpf4	100	98.656	Mus_pahari
ENSSTOG00000027833	PRPF4	100	98.848	MGP_SPRETEiJ_G0027042	Prpf4	100	98.848	Mus_spretus
ENSSTOG00000027833	PRPF4	100	99.232	ENSMPUG00000007883	PRPF4	100	99.232	Mustela_putorius_furo
ENSSTOG00000027833	PRPF4	100	98.848	ENSMLUG00000015309	-	97	98.848	Myotis_lucifugus
ENSSTOG00000027833	PRPF4	100	96.929	ENSMLUG00000008626	-	97	96.929	Myotis_lucifugus
ENSSTOG00000027833	PRPF4	100	93.666	ENSNGAG00000000468	Prpf4	100	93.666	Nannospalax_galili
ENSSTOG00000027833	PRPF4	96	77.183	ENSNBRG00000007972	prpf4	99	77.183	Neolamprologus_brichardi
ENSSTOG00000027833	PRPF4	100	99.424	ENSNLEG00000016647	PRPF4	100	99.424	Nomascus_leucogenys
ENSSTOG00000027833	PRPF4	99	94.553	ENSMEUG00000013256	PRPF4	100	94.553	Notamacropus_eugenii
ENSSTOG00000027833	PRPF4	100	98.467	ENSOPRG00000005302	PRPF4	100	98.467	Ochotona_princeps
ENSSTOG00000027833	PRPF4	100	99.040	ENSODEG00000018147	PRPF4	100	99.040	Octodon_degus
ENSSTOG00000027833	PRPF4	96	76.984	ENSONIG00000012671	prpf4	99	76.984	Oreochromis_niloticus
ENSSTOG00000027833	PRPF4	100	99.232	ENSOCUG00000005046	PRPF4	100	99.232	Oryctolagus_cuniculus
ENSSTOG00000027833	PRPF4	96	74.900	ENSORLG00000019641	prpf4	99	74.900	Oryzias_latipes
ENSSTOG00000027833	PRPF4	96	74.900	ENSORLG00020019438	prpf4	99	74.900	Oryzias_latipes_hni
ENSSTOG00000027833	PRPF4	96	75.158	ENSOMEG00000020941	prpf4	99	75.158	Oryzias_melastigma
ENSSTOG00000027833	PRPF4	100	94.626	ENSOGAG00000007802	PRPF4	98	94.626	Otolemur_garnettii
ENSSTOG00000027833	PRPF4	100	98.848	ENSOARG00000006319	PRPF4	97	98.848	Ovis_aries
ENSSTOG00000027833	PRPF4	100	99.040	ENSPPAG00000041797	PRPF4	100	99.040	Pan_paniscus
ENSSTOG00000027833	PRPF4	100	99.424	ENSPPRG00000014360	PRPF4	100	99.424	Panthera_pardus
ENSSTOG00000027833	PRPF4	100	99.424	ENSPTIG00000009574	PRPF4	100	99.424	Panthera_tigris_altaica
ENSSTOG00000027833	PRPF4	100	99.040	ENSPTRG00000021274	PRPF4	100	98.851	Pan_troglodytes
ENSSTOG00000027833	PRPF4	100	98.848	ENSPANG00000025776	PRPF4	96	98.848	Papio_anubis
ENSSTOG00000027833	PRPF4	97	81.188	ENSPKIG00000017259	prpf4	99	81.188	Paramormyrops_kingsleyae
ENSSTOG00000027833	PRPF4	100	89.635	ENSPSIG00000010713	PRPF4	91	90.154	Pelodiscus_sinensis
ENSSTOG00000027833	PRPF4	99	58.791	ENSPMGG00000000997	prpf4	99	58.899	Periophthalmus_magnuspinnatus
ENSSTOG00000027833	PRPF4	100	99.040	ENSPEMG00000024115	Prpf4	100	99.040	Peromyscus_maniculatus_bairdii
ENSSTOG00000027833	PRPF4	99	94.553	ENSPCIG00000003821	PRPF4	99	94.553	Phascolarctos_cinereus
ENSSTOG00000027833	PRPF4	96	70.414	ENSPFOG00000013524	prpf4	98	73.602	Poecilia_formosa
ENSSTOG00000027833	PRPF4	83	71.560	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
ENSSTOG00000027833	PRPF4	92	74.699	ENSPMEG00000006813	prpf4	98	74.699	Poecilia_mexicana
ENSSTOG00000027833	PRPF4	98	99.411	ENSPCAG00000002561	PRPF4	99	99.411	Procavia_capensis
ENSSTOG00000027833	PRPF4	100	99.424	ENSPCOG00000011975	PRPF4	100	99.424	Propithecus_coquereli
ENSSTOG00000027833	PRPF4	100	95.402	ENSPVAG00000004708	PRPF4	100	95.402	Pteropus_vampyrus
ENSSTOG00000027833	PRPF4	96	76.984	ENSPNYG00000008013	prpf4	99	76.984	Pundamilia_nyererei
ENSSTOG00000027833	PRPF4	97	80.198	ENSPNAG00000000697	prpf4	99	80.198	Pygocentrus_nattereri
ENSSTOG00000027833	PRPF4	100	98.656	ENSRNOG00000014777	Prpf4	100	98.656	Rattus_norvegicus
ENSSTOG00000027833	PRPF4	100	99.232	ENSRBIG00000040221	PRPF4	100	99.232	Rhinopithecus_bieti
ENSSTOG00000027833	PRPF4	100	99.232	ENSRROG00000040240	PRPF4	100	99.232	Rhinopithecus_roxellana
ENSSTOG00000027833	PRPF4	100	95.029	ENSSHAG00000017658	PRPF4	100	95.029	Sarcophilus_harrisii
ENSSTOG00000027833	PRPF4	97	81.782	ENSSFOG00015008963	prpf4	99	81.782	Scleropages_formosus
ENSSTOG00000027833	PRPF4	96	75.595	ENSSMAG00000008889	prpf4	99	75.595	Scophthalmus_maximus
ENSSTOG00000027833	PRPF4	96	73.506	ENSSDUG00000022083	prpf4	98	73.705	Seriola_dumerili
ENSSTOG00000027833	PRPF4	96	73.705	ENSSLDG00000008115	prpf4	98	73.904	Seriola_lalandi_dorsalis
ENSSTOG00000027833	PRPF4	100	90.595	ENSSPUG00000015582	PRPF4	100	90.595	Sphenodon_punctatus
ENSSTOG00000027833	PRPF4	96	71.006	ENSSPAG00000011286	prpf4	99	71.006	Stegastes_partitus
ENSSTOG00000027833	PRPF4	100	99.424	ENSSSCG00000024648	PRPF4	100	99.424	Sus_scrofa
ENSSTOG00000027833	PRPF4	99	86.564	ENSTGUG00000002623	PRPF4	100	90.389	Taeniopygia_guttata
ENSSTOG00000027833	PRPF4	97	75.889	ENSTRUG00000008853	prpf4	99	75.889	Takifugu_rubripes
ENSSTOG00000027833	PRPF4	97	75.248	ENSTNIG00000013250	prpf4	99	75.248	Tetraodon_nigroviridis
ENSSTOG00000027833	PRPF4	100	90.421	ENSTBEG00000000821	PRPF4	100	90.421	Tupaia_belangeri
ENSSTOG00000027833	PRPF4	82	98.837	ENSTTRG00000003246	PRPF4	85	98.837	Tursiops_truncatus
ENSSTOG00000027833	PRPF4	67	96.108	ENSUAMG00000018288	PRPF4	90	96.108	Ursus_americanus
ENSSTOG00000027833	PRPF4	100	98.464	ENSUMAG00000019375	PRPF4	100	98.464	Ursus_maritimus
ENSSTOG00000027833	PRPF4	100	98.659	ENSVPAG00000005281	PRPF4	100	98.659	Vicugna_pacos
ENSSTOG00000027833	PRPF4	100	98.095	ENSVVUG00000002476	PRPF4	100	98.095	Vulpes_vulpes
ENSSTOG00000027833	PRPF4	77	62.760	ENSXCOG00000006101	prpf4	93	62.078	Xiphophorus_couchianus
ENSSTOG00000027833	PRPF4	96	68.257	ENSXMAG00000002750	prpf4	98	68.257	Xiphophorus_maculatus