EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSTOG00000028127 (Gene tree)
Gene ID: 101960780
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 235630 bases
Position: chrJH393348.1:8126291-8361920
Accession: 101960780
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000023967	EST1	PF10374.9	6.6e-15	1	1
ENSSTOP00000023967	EST1_DNA_bind	PF10373.9	1.8e-60	1	1
ENSSTOP00000032052	EST1_DNA_bind	PF10373.9	2.5e-10	1	1
ENSSTOP00000023967	PIN_4	PF13638.6	1.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000020820	SMG6-201	6045	XM_005327910	ENSSTOP00000023967	1418 (aa)	XP_005327967	I3NHX0
ENSSTOT00000034842	SMG6-202	711	-	ENSSTOP00000032052	237 (aa)	-	A0A287DET1

Gene Model

Click here to download ENSSTOG00000028127's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000028127's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000028127	SMG6	100	93.446	ENSG00000070366	SMG6	100	99.187	Homo_sapiens
ENSSTOG00000028127	SMG6	92	56.332	ENSAPOG00000019448	smg6	74	54.980	Acanthochromis_polyacanthus
ENSSTOG00000028127	SMG6	100	93.939	ENSAMEG00000007632	SMG6	100	93.939	Ailuropoda_melanoleuca
ENSSTOG00000028127	SMG6	84	62.802	ENSACIG00000012997	smg6	98	49.412	Amphilophus_citrinellus
ENSSTOG00000028127	SMG6	92	55.895	ENSAOCG00000002630	smg6	74	54.836	Amphiprion_ocellaris
ENSSTOG00000028127	SMG6	92	56.332	ENSAPEG00000019101	smg6	74	54.992	Amphiprion_percula
ENSSTOG00000028127	SMG6	89	74.648	ENSACAG00000011783	SMG6	99	58.052	Anolis_carolinensis
ENSSTOG00000028127	SMG6	100	93.869	ENSANAG00000035760	SMG6	100	93.869	Aotus_nancymaae
ENSSTOG00000028127	SMG6	84	58.768	ENSACLG00000005288	smg6	86	52.422	Astatotilapia_calliptera
ENSSTOG00000028127	SMG6	85	60.577	ENSAMXG00000017326	smg6	99	50.587	Astyanax_mexicanus
ENSSTOG00000028127	SMG6	100	93.164	ENSBTAG00000000267	SMG6	100	93.164	Bos_taurus
ENSSTOG00000028127	SMG6	100	93.587	ENSCJAG00000001820	SMG6	100	93.587	Callithrix_jacchus
ENSSTOG00000028127	SMG6	100	93.583	ENSCAFG00000019260	SMG6	100	93.583	Canis_familiaris
ENSSTOG00000028127	SMG6	100	93.583	ENSCAFG00020009770	SMG6	100	93.583	Canis_lupus_dingo
ENSSTOG00000028127	SMG6	100	92.953	ENSCHIG00000021998	SMG6	100	92.953	Capra_hircus
ENSSTOG00000028127	SMG6	100	93.446	ENSTSYG00000003406	SMG6	100	98.434	Carlito_syrichta
ENSSTOG00000028127	SMG6	98	78.489	ENSCAPG00000016197	SMG6	99	83.607	Cavia_aperea
ENSSTOG00000028127	SMG6	99	94.068	ENSCPOG00000014878	SMG6	99	94.068	Cavia_porcellus
ENSSTOG00000028127	SMG6	100	93.869	ENSCCAG00000035801	SMG6	100	93.869	Cebus_capucinus
ENSSTOG00000028127	SMG6	100	93.446	ENSCATG00000031956	SMG6	100	93.446	Cercocebus_atys
ENSSTOG00000028127	SMG6	100	97.059	ENSCLAG00000006748	SMG6	100	97.059	Chinchilla_lanigera
ENSSTOG00000028127	SMG6	100	94.010	ENSCSAG00000013800	SMG6	100	94.010	Chlorocebus_sabaeus
ENSSTOG00000028127	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSSTOG00000028127	SMG6	94	84.305	ENSCPBG00000020369	SMG6	100	73.264	Chrysemys_picta_bellii
ENSSTOG00000028127	SMG6	68	35.260	ENSCING00000010099	-	99	35.305	Ciona_intestinalis
ENSSTOG00000028127	SMG6	95	96.875	ENSCANG00000031764	SMG6	100	97.847	Colobus_angolensis_palliatus
ENSSTOG00000028127	SMG6	55	90.244	ENSCGRG00001019595	Smg6	100	90.026	Cricetulus_griseus_chok1gshd
ENSSTOG00000028127	SMG6	98	86.527	ENSCGRG00000007782	Smg6	100	86.671	Cricetulus_griseus_crigri
ENSSTOG00000028127	SMG6	100	52.370	ENSCSEG00000012757	smg6	91	52.474	Cynoglossus_semilaevis
ENSSTOG00000028127	SMG6	84	59.716	ENSCVAG00000012789	smg6	74	53.552	Cyprinodon_variegatus
ENSSTOG00000028127	SMG6	100	50.000	ENSDARG00000100481	smg6	100	50.711	Danio_rerio
ENSSTOG00000028127	SMG6	100	93.376	ENSDNOG00000048283	SMG6	100	93.376	Dasypus_novemcinctus
ENSSTOG00000028127	SMG6	96	99.376	ENSDORG00000016614	Smg6	100	99.376	Dipodomys_ordii
ENSSTOG00000028127	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSSTOG00000028127	SMG6	92	49.776	ENSEBUG00000005059	smg6	73	48.699	Eptatretus_burgeri
ENSSTOG00000028127	SMG6	99	94.284	ENSEASG00005009318	SMG6	99	94.284	Equus_asinus_asinus
ENSSTOG00000028127	SMG6	99	94.143	ENSECAG00000006519	SMG6	99	94.143	Equus_caballus
ENSSTOG00000028127	SMG6	100	82.171	ENSEEUG00000003493	SMG6	100	82.171	Erinaceus_europaeus
ENSSTOG00000028127	SMG6	85	62.381	ENSELUG00000005934	smg6	67	56.201	Esox_lucius
ENSSTOG00000028127	SMG6	100	94.785	ENSFCAG00000028817	SMG6	100	94.785	Felis_catus
ENSSTOG00000028127	SMG6	94	83.408	ENSFALG00000006538	SMG6	100	72.566	Ficedula_albicollis
ENSSTOG00000028127	SMG6	100	96.218	ENSFDAG00000015106	SMG6	100	96.218	Fukomys_damarensis
ENSSTOG00000028127	SMG6	84	56.872	ENSFHEG00000013282	smg6	75	53.271	Fundulus_heteroclitus
ENSSTOG00000028127	SMG6	83	57.416	ENSGMOG00000019077	smg6	58	68.224	Gadus_morhua
ENSSTOG00000028127	SMG6	94	83.857	ENSGALG00000003108	SMG6	98	72.161	Gallus_gallus
ENSSTOG00000028127	SMG6	85	57.277	ENSGAFG00000000379	smg6	74	54.094	Gambusia_affinis
ENSSTOG00000028127	SMG6	100	51.200	ENSGACG00000020521	smg6	99	53.595	Gasterosteus_aculeatus
ENSSTOG00000028127	SMG6	94	83.408	ENSGAGG00000025617	SMG6	100	72.850	Gopherus_agassizii
ENSSTOG00000028127	SMG6	100	94.292	ENSGGOG00000017156	SMG6	100	94.292	Gorilla_gorilla
ENSSTOG00000028127	SMG6	84	58.768	ENSHBUG00000021311	smg6	78	53.466	Haplochromis_burtoni
ENSSTOG00000028127	SMG6	100	97.059	ENSHGLG00000012882	SMG6	100	97.059	Heterocephalus_glaber_female
ENSSTOG00000028127	SMG6	100	97.059	ENSHGLG00100017815	SMG6	100	97.059	Heterocephalus_glaber_male
ENSSTOG00000028127	SMG6	86	61.574	ENSHCOG00000008761	smg6	97	53.490	Hippocampus_comes
ENSSTOG00000028127	SMG6	91	58.636	ENSIPUG00000012493	smg6	76	54.389	Ictalurus_punctatus
ENSSTOG00000028127	SMG6	79	91.079	ENSJJAG00000015367	Smg6	95	89.081	Jaculus_jaculus
ENSSTOG00000028127	SMG6	92	56.710	ENSKMAG00000000279	smg6	75	54.375	Kryptolebias_marmoratus
ENSSTOG00000028127	SMG6	81	59.024	ENSLBEG00000002184	smg6	76	53.118	Labrus_bergylta
ENSSTOG00000028127	SMG6	95	80.804	ENSLACG00000003276	SMG6	100	80.645	Latimeria_chalumnae
ENSSTOG00000028127	SMG6	55	57.646	ENSLACG00000000806	-	98	59.926	Latimeria_chalumnae
ENSSTOG00000028127	SMG6	100	63.333	ENSLOCG00000006448	smg6	99	54.627	Lepisosteus_oculatus
ENSSTOG00000028127	SMG6	100	92.882	ENSLAFG00000001261	SMG6	100	92.882	Loxodonta_africana
ENSSTOG00000028127	SMG6	100	94.080	ENSMFAG00000003394	SMG6	100	94.080	Macaca_fascicularis
ENSSTOG00000028127	SMG6	100	94.010	ENSMMUG00000023161	SMG6	100	94.010	Macaca_mulatta
ENSSTOG00000028127	SMG6	97	94.760	ENSMNEG00000044592	SMG6	100	89.037	Macaca_nemestrina
ENSSTOG00000028127	SMG6	97	94.760	ENSMLEG00000029353	SMG6	100	97.932	Mandrillus_leucophaeus
ENSSTOG00000028127	SMG6	84	60.952	ENSMAMG00000020119	smg6	98	49.034	Mastacembelus_armatus
ENSSTOG00000028127	SMG6	84	58.768	ENSMZEG00005024736	smg6	80	52.609	Maylandia_zebra
ENSSTOG00000028127	SMG6	52	90.244	ENSMGAG00000017200	-	100	85.559	Meleagris_gallopavo
ENSSTOG00000028127	SMG6	73	66.667	ENSMGAG00000005401	-	99	66.667	Meleagris_gallopavo
ENSSTOG00000028127	SMG6	97	94.805	ENSMAUG00000017203	-	100	94.805	Mesocricetus_auratus
ENSSTOG00000028127	SMG6	100	95.913	ENSMICG00000012913	SMG6	100	95.913	Microcebus_murinus
ENSSTOG00000028127	SMG6	99	94.894	ENSMOCG00000019924	-	99	94.894	Microtus_ochrogaster
ENSSTOG00000028127	SMG6	100	48.146	ENSMMOG00000010883	smg6	100	49.368	Mola_mola
ENSSTOG00000028127	SMG6	81	46.667	ENSMODG00000024395	-	99	40.900	Monodelphis_domestica
ENSSTOG00000028127	SMG6	73	49.432	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
ENSSTOG00000028127	SMG6	97	92.140	ENSMODG00000010622	SMG6	100	86.287	Monodelphis_domestica
ENSSTOG00000028127	SMG6	73	49.432	ENSMODG00000024460	-	99	42.074	Monodelphis_domestica
ENSSTOG00000028127	SMG6	73	48.864	ENSMODG00000024410	-	99	41.487	Monodelphis_domestica
ENSSTOG00000028127	SMG6	84	59.242	ENSMALG00000001106	smg6	73	55.202	Monopterus_albus
ENSSTOG00000028127	SMG6	100	94.958	MGP_CAROLIEiJ_G0016729	Smg6	100	94.958	Mus_caroli
ENSSTOG00000028127	SMG6	100	94.958	ENSMUSG00000038290	Smg6	100	94.958	Mus_musculus
ENSSTOG00000028127	SMG6	100	95.378	MGP_PahariEiJ_G0017866	Smg6	100	95.378	Mus_pahari
ENSSTOG00000028127	SMG6	100	94.958	MGP_SPRETEiJ_G0017572	Smg6	100	94.958	Mus_spretus
ENSSTOG00000028127	SMG6	100	93.798	ENSMPUG00000013046	SMG6	100	93.798	Mustela_putorius_furo
ENSSTOG00000028127	SMG6	100	93.658	ENSMLUG00000005739	SMG6	100	93.658	Myotis_lucifugus
ENSSTOG00000028127	SMG6	100	95.781	ENSNGAG00000007287	Smg6	100	95.781	Nannospalax_galili
ENSSTOG00000028127	SMG6	88	57.919	ENSNBRG00000009511	smg6	81	52.441	Neolamprologus_brichardi
ENSSTOG00000028127	SMG6	95	97.321	ENSNLEG00000017171	SMG6	100	98.434	Nomascus_leucogenys
ENSSTOG00000028127	SMG6	97	91.266	ENSMEUG00000015804	SMG6	100	82.615	Notamacropus_eugenii
ENSSTOG00000028127	SMG6	72	91.176	ENSOPRG00000000579	SMG6	84	98.947	Ochotona_princeps
ENSSTOG00000028127	SMG6	96	97.508	ENSODEG00000008038	SMG6	100	97.508	Octodon_degus
ENSSTOG00000028127	SMG6	100	51.007	ENSONIG00000005594	smg6	100	51.568	Oreochromis_niloticus
ENSSTOG00000028127	SMG6	100	93.807	ENSOCUG00000013018	SMG6	100	94.018	Oryctolagus_cuniculus
ENSSTOG00000028127	SMG6	83	58.852	ENSORLG00000003317	smg6	78	52.651	Oryzias_latipes
ENSSTOG00000028127	SMG6	83	58.373	ENSORLG00020015343	smg6	74	54.046	Oryzias_latipes_hni
ENSSTOG00000028127	SMG6	83	58.852	ENSORLG00015020454	smg6	74	54.389	Oryzias_latipes_hsok
ENSSTOG00000028127	SMG6	83	58.852	ENSOMEG00000010838	smg6	75	53.785	Oryzias_melastigma
ENSSTOG00000028127	SMG6	100	94.648	ENSOGAG00000004483	SMG6	100	94.648	Otolemur_garnettii
ENSSTOG00000028127	SMG6	97	95.197	ENSOARG00000015076	SMG6	100	92.708	Ovis_aries
ENSSTOG00000028127	SMG6	100	94.292	ENSPPAG00000043296	SMG6	100	94.292	Pan_paniscus
ENSSTOG00000028127	SMG6	100	94.715	ENSPPRG00000014581	SMG6	100	94.715	Panthera_pardus
ENSSTOG00000028127	SMG6	98	94.801	ENSPTIG00000008925	SMG6	100	99.022	Panthera_tigris_altaica
ENSSTOG00000028127	SMG6	100	94.292	ENSPTRG00000008544	SMG6	100	98.630	Pan_troglodytes
ENSSTOG00000028127	SMG6	100	93.869	ENSPANG00000024588	SMG6	100	93.869	Papio_anubis
ENSSTOG00000028127	SMG6	94	80.717	ENSPSIG00000006660	SMG6	96	71.496	Pelodiscus_sinensis
ENSSTOG00000028127	SMG6	98	60.870	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSSTOG00000028127	SMG6	100	93.798	ENSPEMG00000020707	Smg6	99	95.259	Peromyscus_maniculatus_bairdii
ENSSTOG00000028127	SMG6	100	51.275	ENSPFOG00000012035	smg6	100	50.872	Poecilia_formosa
ENSSTOG00000028127	SMG6	83	58.654	ENSPLAG00000017660	smg6	74	53.543	Poecilia_latipinna
ENSSTOG00000028127	SMG6	83	59.615	ENSPMEG00000000258	smg6	74	53.937	Poecilia_mexicana
ENSSTOG00000028127	SMG6	83	59.615	ENSPREG00000010066	smg6	74	54.459	Poecilia_reticulata
ENSSTOG00000028127	SMG6	100	88.889	ENSPPYG00000007790	SMG6	100	88.889	Pongo_abelii
ENSSTOG00000028127	SMG6	100	88.654	ENSPCAG00000000552	SMG6	100	88.654	Procavia_capensis
ENSSTOG00000028127	SMG6	100	95.490	ENSPCOG00000020925	SMG6	100	95.490	Propithecus_coquereli
ENSSTOG00000028127	SMG6	97	94.323	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSSTOG00000028127	SMG6	88	57.919	ENSPNYG00000024151	smg6	86	54.226	Pundamilia_nyererei
ENSSTOG00000028127	SMG6	93	63.571	ENSPNAG00000015480	smg6	94	63.375	Pygocentrus_nattereri
ENSSTOG00000028127	SMG6	100	93.164	ENSRNOG00000003041	Smg6	97	97.406	Rattus_norvegicus
ENSSTOG00000028127	SMG6	100	93.728	ENSRBIG00000024746	SMG6	100	93.728	Rhinopithecus_bieti
ENSSTOG00000028127	SMG6	100	93.798	ENSRROG00000030423	SMG6	100	97.456	Rhinopithecus_roxellana
ENSSTOG00000028127	SMG6	100	93.869	ENSSBOG00000022518	SMG6	100	92.178	Saimiri_boliviensis_boliviensis
ENSSTOG00000028127	SMG6	88	42.254	ENSSHAG00000000380	-	99	39.328	Sarcophilus_harrisii
ENSSTOG00000028127	SMG6	97	90.393	ENSSHAG00000010045	SMG6	98	85.581	Sarcophilus_harrisii
ENSSTOG00000028127	SMG6	92	60.515	ENSSFOG00015005436	smg6	70	57.120	Scleropages_formosus
ENSSTOG00000028127	SMG6	88	59.009	ENSSMAG00000019777	smg6	73	54.708	Scophthalmus_maximus
ENSSTOG00000028127	SMG6	84	58.962	ENSSDUG00000016412	smg6	79	52.326	Seriola_dumerili
ENSSTOG00000028127	SMG6	84	58.962	ENSSLDG00000020747	smg6	83	51.353	Seriola_lalandi_dorsalis
ENSSTOG00000028127	SMG6	94	82.589	ENSSPUG00000007152	SMG6	99	70.404	Sphenodon_punctatus
ENSSTOG00000028127	SMG6	92	57.018	ENSSPAG00000015633	smg6	74	54.474	Stegastes_partitus
ENSSTOG00000028127	SMG6	100	93.310	ENSSSCG00000017826	SMG6	100	93.310	Sus_scrofa
ENSSTOG00000028127	SMG6	94	85.202	ENSTGUG00000005836	SMG6	100	72.702	Taeniopygia_guttata
ENSSTOG00000028127	SMG6	100	48.074	ENSTRUG00000000358	smg6	100	48.642	Takifugu_rubripes
ENSSTOG00000028127	SMG6	100	50.033	ENSTNIG00000016164	smg6	100	50.033	Tetraodon_nigroviridis
ENSSTOG00000028127	SMG6	97	98.529	ENSTBEG00000011424	SMG6	100	89.852	Tupaia_belangeri
ENSSTOG00000028127	SMG6	97	93.886	ENSTTRG00000001175	SMG6	91	92.273	Tursiops_truncatus
ENSSTOG00000028127	SMG6	100	94.163	ENSUAMG00000025152	SMG6	100	94.164	Ursus_americanus
ENSSTOG00000028127	SMG6	98	94.513	ENSUMAG00000009306	SMG6	100	94.513	Ursus_maritimus
ENSSTOG00000028127	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSSTOG00000028127	SMG6	100	93.371	ENSVVUG00000021727	SMG6	100	93.371	Vulpes_vulpes
ENSSTOG00000028127	SMG6	98	59.690	ENSXETG00000023799	SMG6	100	59.257	Xenopus_tropicalis
ENSSTOG00000028127	SMG6	83	59.135	ENSXMAG00000010321	smg6	74	53.762	Xiphophorus_maculatus