EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSTOG00000028372 (Gene tree)
Gene ID: 101968155
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ictidomys_tridecemlineatus
Status: putative
Strand: Minus strand
Length: 3546 bases
Position: chrJH393398.1:1390459-1394004
Accession: 101968155
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSTOP00000017022	LSM	PF01423.22	3.3e-21	1	1
ENSSTOP00000032064	LSM	PF01423.22	3.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSTOT00000034685	LSM7-201	399	XM_005332196	ENSSTOP00000032064	105 (aa)	XP_005332253	A0A287DEV4
ENSSTOT00000028943	LSM7-202	309	-	ENSSTOP00000017022	102 (aa)	-	I3MY27

Gene Model

Click here to download ENSSTOG00000028372's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSTOG00000028372's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSTOG00000028372	LSM7	73	35.526	ENSSTOG00000009039	LSM8	73	35.526
ENSSTOG00000028372	LSM7	65	34.848	ENSSTOG00000019596	-	89	34.848
ENSSTOG00000028372	LSM7	69	32.857	ENSSTOG00000011041	-	82	32.857
ENSSTOG00000028372	LSM7	70	36.620	ENSSTOG00000008654	-	83	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSTOG00000028372	LSM7	99	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSSTOG00000028372	LSM7	92	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSSTOG00000028372	LSM7	99	99.010	ENSAMEG00000005484	LSM7	99	99.020	Ailuropoda_melanoleuca
ENSSTOG00000028372	LSM7	95	94.845	ENSACIG00000006498	lsm7	77	94.845	Amphilophus_citrinellus
ENSSTOG00000028372	LSM7	99	95.050	ENSAOCG00000001077	lsm7	94	94.175	Amphiprion_ocellaris
ENSSTOG00000028372	LSM7	99	95.050	ENSAPEG00000024447	lsm7	94	94.175	Amphiprion_percula
ENSSTOG00000028372	LSM7	99	95.050	ENSAPEG00000000694	lsm7	98	95.050	Amphiprion_percula
ENSSTOG00000028372	LSM7	99	95.050	ENSATEG00000008557	lsm7	98	95.050	Anabas_testudineus
ENSSTOG00000028372	LSM7	99	91.089	ENSANAG00000022222	-	98	91.089	Aotus_nancymaae
ENSSTOG00000028372	LSM7	99	100.000	ENSANAG00000037196	-	98	100.000	Aotus_nancymaae
ENSSTOG00000028372	LSM7	99	94.059	ENSACLG00000021021	lsm7	98	94.059	Astatotilapia_calliptera
ENSSTOG00000028372	LSM7	99	95.050	ENSAMXG00000037622	lsm7	98	95.050	Astyanax_mexicanus
ENSSTOG00000028372	LSM7	99	100.000	ENSBTAG00000004521	LSM7	98	100.000	Bos_taurus
ENSSTOG00000028372	LSM7	98	57.000	WBGene00003081	lsm-7	97	56.436	Caenorhabditis_elegans
ENSSTOG00000028372	LSM7	53	100.000	ENSCJAG00000039713	-	66	100.000	Callithrix_jacchus
ENSSTOG00000028372	LSM7	99	99.010	ENSCAFG00000019409	LSM7	100	99.029	Canis_familiaris
ENSSTOG00000028372	LSM7	99	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSSTOG00000028372	LSM7	99	100.000	ENSCHIG00000023663	LSM7	99	100.000	Capra_hircus
ENSSTOG00000028372	LSM7	70	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSSTOG00000028372	LSM7	99	100.000	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSSTOG00000028372	LSM7	100	99.020	ENSCCAG00000035456	LSM7	100	99.020	Cebus_capucinus
ENSSTOG00000028372	LSM7	99	100.000	ENSCATG00000023543	LSM7	98	100.000	Cercocebus_atys
ENSSTOG00000028372	LSM7	99	100.000	ENSCLAG00000011635	LSM7	98	100.000	Chinchilla_lanigera
ENSSTOG00000028372	LSM7	99	100.000	ENSCSAG00000011599	LSM7	98	100.000	Chlorocebus_sabaeus
ENSSTOG00000028372	LSM7	71	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSSTOG00000028372	LSM7	94	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSSTOG00000028372	LSM7	99	100.000	ENSCANG00000035525	LSM7	98	100.000	Colobus_angolensis_palliatus
ENSSTOG00000028372	LSM7	99	99.010	ENSCGRG00001000807	-	98	99.010	Cricetulus_griseus_chok1gshd
ENSSTOG00000028372	LSM7	89	87.912	ENSCGRG00001016005	-	93	87.912	Cricetulus_griseus_chok1gshd
ENSSTOG00000028372	LSM7	89	87.912	ENSCGRG00000006821	-	93	87.912	Cricetulus_griseus_crigri
ENSSTOG00000028372	LSM7	99	99.010	ENSCGRG00000014355	-	98	99.020	Cricetulus_griseus_crigri
ENSSTOG00000028372	LSM7	100	94.118	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSSTOG00000028372	LSM7	99	96.040	ENSCVAG00000021091	lsm7	94	96.040	Cyprinodon_variegatus
ENSSTOG00000028372	LSM7	99	95.050	ENSDARG00000058328	lsm7	98	95.050	Danio_rerio
ENSSTOG00000028372	LSM7	100	97.059	ENSDORG00000024460	Lsm7	100	97.059	Dipodomys_ordii
ENSSTOG00000028372	LSM7	95	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSSTOG00000028372	LSM7	99	97.030	ENSETEG00000012788	LSM7	100	97.059	Echinops_telfairi
ENSSTOG00000028372	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSSTOG00000028372	LSM7	99	85.149	ENSEBUG00000016992	lsm7	98	85.294	Eptatretus_burgeri
ENSSTOG00000028372	LSM7	99	96.040	ENSECAG00000001440	LSM7	65	96.040	Equus_caballus
ENSSTOG00000028372	LSM7	99	99.010	ENSFCAG00000003445	LSM7	98	99.010	Felis_catus
ENSSTOG00000028372	LSM7	99	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSSTOG00000028372	LSM7	94	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSSTOG00000028372	LSM7	99	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSSTOG00000028372	LSM7	99	93.069	ENSGMOG00000013320	lsm7	99	93.137	Gadus_morhua
ENSSTOG00000028372	LSM7	99	96.040	ENSGAFG00000013902	lsm7	98	96.040	Gambusia_affinis
ENSSTOG00000028372	LSM7	99	94.059	ENSGACG00000010390	lsm7	99	94.118	Gasterosteus_aculeatus
ENSSTOG00000028372	LSM7	99	100.000	ENSGGOG00000010172	LSM7	98	100.000	Gorilla_gorilla
ENSSTOG00000028372	LSM7	99	94.059	ENSHBUG00000004616	lsm7	98	94.059	Haplochromis_burtoni
ENSSTOG00000028372	LSM7	99	100.000	ENSHGLG00000010587	LSM7	98	100.000	Heterocephalus_glaber_female
ENSSTOG00000028372	LSM7	99	100.000	ENSHGLG00100000852	LSM7	98	100.000	Heterocephalus_glaber_male
ENSSTOG00000028372	LSM7	99	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSSTOG00000028372	LSM7	99	95.050	ENSIPUG00000024724	lsm7	98	95.050	Ictalurus_punctatus
ENSSTOG00000028372	LSM7	99	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSSTOG00000028372	LSM7	99	96.040	ENSKMAG00000022151	lsm7	98	96.040	Kryptolebias_marmoratus
ENSSTOG00000028372	LSM7	99	95.050	ENSLBEG00000005203	lsm7	98	95.050	Labrus_bergylta
ENSSTOG00000028372	LSM7	99	99.010	ENSLACG00000015700	LSM7	99	98.039	Latimeria_chalumnae
ENSSTOG00000028372	LSM7	99	98.020	ENSLOCG00000004356	lsm7	99	98.039	Lepisosteus_oculatus
ENSSTOG00000028372	LSM7	99	100.000	ENSLAFG00000029302	LSM7	99	100.000	Loxodonta_africana
ENSSTOG00000028372	LSM7	99	100.000	ENSMFAG00000044572	LSM7	98	100.000	Macaca_fascicularis
ENSSTOG00000028372	LSM7	100	100.000	ENSMMUG00000000452	LSM7	100	100.000	Macaca_mulatta
ENSSTOG00000028372	LSM7	99	100.000	ENSMNEG00000004393	LSM7	98	100.000	Macaca_nemestrina
ENSSTOG00000028372	LSM7	99	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSSTOG00000028372	LSM7	99	94.059	ENSMAMG00000005410	lsm7	98	94.059	Mastacembelus_armatus
ENSSTOG00000028372	LSM7	99	94.059	ENSMZEG00005028055	lsm7	98	94.059	Maylandia_zebra
ENSSTOG00000028372	LSM7	99	98.020	ENSMGAG00000000750	LSM7	87	98.020	Meleagris_gallopavo
ENSSTOG00000028372	LSM7	99	99.010	ENSMAUG00000009276	Lsm7	99	99.020	Mesocricetus_auratus
ENSSTOG00000028372	LSM7	99	100.000	ENSMICG00000009988	-	98	100.000	Microcebus_murinus
ENSSTOG00000028372	LSM7	99	100.000	ENSMICG00000028619	-	98	100.000	Microcebus_murinus
ENSSTOG00000028372	LSM7	99	99.010	ENSMOCG00000016925	Lsm7	98	99.010	Microtus_ochrogaster
ENSSTOG00000028372	LSM7	99	95.050	ENSMMOG00000019645	lsm7	96	95.050	Mola_mola
ENSSTOG00000028372	LSM7	99	99.010	ENSMODG00000004722	LSM7	98	99.010	Monodelphis_domestica
ENSSTOG00000028372	LSM7	99	94.059	ENSMALG00000014511	lsm7	78	94.059	Monopterus_albus
ENSSTOG00000028372	LSM7	99	97.030	MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	Mus_caroli
ENSSTOG00000028372	LSM7	99	97.030	ENSMUSG00000035215	Lsm7	98	97.030	Mus_musculus
ENSSTOG00000028372	LSM7	99	97.030	MGP_PahariEiJ_G0031020	Lsm7	98	97.030	Mus_pahari
ENSSTOG00000028372	LSM7	99	97.030	MGP_SPRETEiJ_G0016425	Lsm7	98	97.030	Mus_spretus
ENSSTOG00000028372	LSM7	99	99.010	ENSMLUG00000013097	-	99	99.020	Myotis_lucifugus
ENSSTOG00000028372	LSM7	99	92.079	ENSMLUG00000024002	-	93	92.079	Myotis_lucifugus
ENSSTOG00000028372	LSM7	99	98.020	ENSNGAG00000021637	Lsm7	98	98.020	Nannospalax_galili
ENSSTOG00000028372	LSM7	99	94.059	ENSNBRG00000015770	lsm7	91	92.381	Neolamprologus_brichardi
ENSSTOG00000028372	LSM7	92	94.681	ENSNBRG00000001237	-	82	94.118	Neolamprologus_brichardi
ENSSTOG00000028372	LSM7	99	100.000	ENSNLEG00000002265	LSM7	98	100.000	Nomascus_leucogenys
ENSSTOG00000028372	LSM7	99	93.069	ENSODEG00000018769	-	98	93.069	Octodon_degus
ENSSTOG00000028372	LSM7	99	79.208	ENSODEG00000008190	-	98	79.208	Octodon_degus
ENSSTOG00000028372	LSM7	99	100.000	ENSODEG00000013590	-	98	100.000	Octodon_degus
ENSSTOG00000028372	LSM7	99	94.059	ENSONIG00000001801	lsm7	87	94.059	Oreochromis_niloticus
ENSSTOG00000028372	LSM7	99	95.050	ENSORLG00000023951	lsm7	98	95.050	Oryzias_latipes
ENSSTOG00000028372	LSM7	99	95.050	ENSORLG00020022226	lsm7	98	95.050	Oryzias_latipes_hni
ENSSTOG00000028372	LSM7	99	95.050	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSSTOG00000028372	LSM7	99	95.050	ENSOMEG00000012806	lsm7	98	95.050	Oryzias_melastigma
ENSSTOG00000028372	LSM7	99	98.020	ENSOGAG00000000144	-	100	98.039	Otolemur_garnettii
ENSSTOG00000028372	LSM7	99	88.119	ENSOGAG00000024373	-	98	88.119	Otolemur_garnettii
ENSSTOG00000028372	LSM7	99	100.000	ENSOARG00000014013	LSM7	99	100.000	Ovis_aries
ENSSTOG00000028372	LSM7	99	100.000	ENSPPAG00000026500	LSM7	98	100.000	Pan_paniscus
ENSSTOG00000028372	LSM7	99	99.010	ENSPPRG00000008624	LSM7	98	99.010	Panthera_pardus
ENSSTOG00000028372	LSM7	99	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSSTOG00000028372	LSM7	99	100.000	ENSPTRG00000010233	LSM7	98	100.000	Pan_troglodytes
ENSSTOG00000028372	LSM7	99	100.000	ENSPANG00000020668	LSM7	98	100.000	Papio_anubis
ENSSTOG00000028372	LSM7	99	97.030	ENSPKIG00000011325	lsm7	98	97.030	Paramormyrops_kingsleyae
ENSSTOG00000028372	LSM7	99	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSSTOG00000028372	LSM7	99	95.050	ENSPMGG00000006498	lsm7	98	95.050	Periophthalmus_magnuspinnatus
ENSSTOG00000028372	LSM7	100	98.039	ENSPCIG00000030454	LSM7	100	98.039	Phascolarctos_cinereus
ENSSTOG00000028372	LSM7	99	95.050	ENSPFOG00000012467	lsm7	90	95.098	Poecilia_formosa
ENSSTOG00000028372	LSM7	99	95.050	ENSPLAG00000000252	lsm7	94	95.050	Poecilia_latipinna
ENSSTOG00000028372	LSM7	100	94.118	ENSPMEG00000000587	lsm7	94	95.050	Poecilia_mexicana
ENSSTOG00000028372	LSM7	76	75.949	ENSPREG00000016718	lsm7	63	75.949	Poecilia_reticulata
ENSSTOG00000028372	LSM7	72	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSSTOG00000028372	LSM7	100	99.020	ENSPCOG00000017177	LSM7	100	99.020	Propithecus_coquereli
ENSSTOG00000028372	LSM7	99	94.059	ENSPNYG00000006938	lsm7	98	94.059	Pundamilia_nyererei
ENSSTOG00000028372	LSM7	100	95.098	ENSPNAG00000010141	lsm7	100	95.098	Pygocentrus_nattereri
ENSSTOG00000028372	LSM7	99	98.020	ENSRNOG00000019552	Lsm7	98	98.020	Rattus_norvegicus
ENSSTOG00000028372	LSM7	99	100.000	ENSRBIG00000035978	LSM7	98	100.000	Rhinopithecus_bieti
ENSSTOG00000028372	LSM7	99	100.000	ENSRROG00000034044	LSM7	98	100.000	Rhinopithecus_roxellana
ENSSTOG00000028372	LSM7	89	47.000	YNL147W	-	87	47.000	Saccharomyces_cerevisiae
ENSSTOG00000028372	LSM7	99	100.000	ENSSBOG00000034899	LSM7	98	100.000	Saimiri_boliviensis_boliviensis
ENSSTOG00000028372	LSM7	99	95.050	ENSSFOG00015006728	lsm7	98	95.050	Scleropages_formosus
ENSSTOG00000028372	LSM7	99	95.050	ENSSMAG00000004195	lsm7	100	90.909	Scophthalmus_maximus
ENSSTOG00000028372	LSM7	99	95.050	ENSSDUG00000001863	lsm7	98	95.050	Seriola_dumerili
ENSSTOG00000028372	LSM7	99	95.050	ENSSLDG00000016339	lsm7	98	95.050	Seriola_lalandi_dorsalis
ENSSTOG00000028372	LSM7	99	95.050	ENSSPAG00000015221	lsm7	98	95.050	Stegastes_partitus
ENSSTOG00000028372	LSM7	100	99.020	ENSSSCG00000013463	LSM7	100	99.020	Sus_scrofa
ENSSTOG00000028372	LSM7	99	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSSTOG00000028372	LSM7	99	95.050	ENSTRUG00000022913	lsm7	98	95.050	Takifugu_rubripes
ENSSTOG00000028372	LSM7	99	95.050	ENSTNIG00000015525	lsm7	98	95.050	Tetraodon_nigroviridis
ENSSTOG00000028372	LSM7	69	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSSTOG00000028372	LSM7	99	99.010	ENSUAMG00000000912	LSM7	85	99.020	Ursus_americanus
ENSSTOG00000028372	LSM7	99	99.010	ENSUMAG00000006556	LSM7	80	98.039	Ursus_maritimus
ENSSTOG00000028372	LSM7	70	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSSTOG00000028372	LSM7	99	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSSTOG00000028372	LSM7	99	96.040	ENSXCOG00000002572	lsm7	99	96.040	Xiphophorus_couchianus
ENSSTOG00000028372	LSM7	99	96.040	ENSXMAG00000018630	lsm7	98	96.040	Xiphophorus_maculatus