EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000002361 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Minus strand
Length: 75468 bases
Position: chrGeneScaffold_4019:94269-169736
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000002065	RRM_1	PF00076.22	1.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000002386	PSPC1-201	1536	-	ENSTBEP00000002065	511 (aa)	-	UPI0000F5E84A

Gene Model

Click here to download ENSTBEG00000002361's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000002361's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000002361	PSPC1	100	75.908	ENSG00000121390	PSPC1	98	87.306	Homo_sapiens
ENSTBEG00000002361	PSPC1	88	60.549	ENSAPOG00000015946	pspc1	87	60.814	Acanthochromis_polyacanthus
ENSTBEG00000002361	PSPC1	100	75.670	ENSAMEG00000017420	PSPC1	100	77.543	Ailuropoda_melanoleuca
ENSTBEG00000002361	PSPC1	63	65.015	ENSACIG00000018695	pspc1	87	50.214	Amphilophus_citrinellus
ENSTBEG00000002361	PSPC1	88	59.539	ENSAOCG00000005279	pspc1	87	59.915	Amphiprion_ocellaris
ENSTBEG00000002361	PSPC1	88	59.916	ENSAPEG00000015927	pspc1	87	60.515	Amphiprion_percula
ENSTBEG00000002361	PSPC1	63	60.062	ENSATEG00000004878	pspc1	87	50.000	Anabas_testudineus
ENSTBEG00000002361	PSPC1	77	77.340	ENSAPLG00000006246	PSPC1	99	79.750	Anas_platyrhynchos
ENSTBEG00000002361	PSPC1	65	67.160	ENSAPLG00000003643	SFPQ	65	65.976	Anas_platyrhynchos
ENSTBEG00000002361	PSPC1	88	71.490	ENSACAG00000002093	PSPC1	88	72.570	Anolis_carolinensis
ENSTBEG00000002361	PSPC1	65	57.391	ENSACAG00000013307	-	52	61.538	Anolis_carolinensis
ENSTBEG00000002361	PSPC1	100	76.200	ENSANAG00000000059	PSPC1	98	84.635	Aotus_nancymaae
ENSTBEG00000002361	PSPC1	95	48.837	ENSACLG00000027220	pspc1	87	49.683	Astatotilapia_calliptera
ENSTBEG00000002361	PSPC1	67	72.414	ENSAMXG00000036881	pspc1	88	57.595	Astyanax_mexicanus
ENSTBEG00000002361	PSPC1	100	74.379	ENSBTAG00000003934	PSPC1	100	75.769	Bos_taurus
ENSTBEG00000002361	PSPC1	100	76.008	ENSCJAG00000004554	PSPC1	100	77.735	Callithrix_jacchus
ENSTBEG00000002361	PSPC1	100	75.816	ENSCAFG00020002009	PSPC1	98	86.719	Canis_lupus_dingo
ENSTBEG00000002361	PSPC1	100	74.379	ENSCHIG00000016708	PSPC1	100	75.769	Capra_hircus
ENSTBEG00000002361	PSPC1	77	74.876	ENSTSYG00000032882	PSPC1	88	73.317	Carlito_syrichta
ENSTBEG00000002361	PSPC1	100	74.187	ENSCPOG00000000395	PSPC1	98	84.896	Cavia_porcellus
ENSTBEG00000002361	PSPC1	100	76.008	ENSCCAG00000033498	PSPC1	100	77.735	Cebus_capucinus
ENSTBEG00000002361	PSPC1	100	75.717	ENSCATG00000036434	PSPC1	92	88.253	Cercocebus_atys
ENSTBEG00000002361	PSPC1	77	80.702	ENSCLAG00000005241	PSPC1	89	82.707	Chinchilla_lanigera
ENSTBEG00000002361	PSPC1	75	86.010	ENSCHOG00000008913	PSPC1	90	84.456	Choloepus_hoffmanni
ENSTBEG00000002361	PSPC1	94	70.243	ENSCPBG00000020859	PSPC1	89	74.090	Chrysemys_picta_bellii
ENSTBEG00000002361	PSPC1	65	49.851	ENSCSAVG00000003533	-	52	55.435	Ciona_savignyi
ENSTBEG00000002361	PSPC1	51	99.618	ENSCANG00000018948	PSPC1	87	99.618	Colobus_angolensis_palliatus
ENSTBEG00000002361	PSPC1	100	75.670	ENSCGRG00001018368	Pspc1	100	75.526	Cricetulus_griseus_chok1gshd
ENSTBEG00000002361	PSPC1	100	75.670	ENSCGRG00000011724	Pspc1	100	75.526	Cricetulus_griseus_crigri
ENSTBEG00000002361	PSPC1	87	56.455	ENSCVAG00000007679	-	86	56.893	Cyprinodon_variegatus
ENSTBEG00000002361	PSPC1	99	56.309	ENSDARG00000006621	pspc1	99	63.480	Danio_rerio
ENSTBEG00000002361	PSPC1	100	75.526	ENSDNOG00000011078	PSPC1	100	76.673	Dasypus_novemcinctus
ENSTBEG00000002361	PSPC1	100	76.527	ENSDORG00000016050	Pspc1	100	76.908	Dipodomys_ordii
ENSTBEG00000002361	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSTBEG00000002361	PSPC1	53	43.960	ENSEBUG00000010133	pspc1	71	46.324	Eptatretus_burgeri
ENSTBEG00000002361	PSPC1	65	66.667	ENSEBUG00000003964	-	63	64.943	Eptatretus_burgeri
ENSTBEG00000002361	PSPC1	100	75.192	ENSEASG00005000119	PSPC1	99	85.233	Equus_asinus_asinus
ENSTBEG00000002361	PSPC1	100	75.192	ENSECAG00000017286	PSPC1	99	85.233	Equus_caballus
ENSTBEG00000002361	PSPC1	78	60.697	ENSEEUG00000011288	-	69	77.273	Erinaceus_europaeus
ENSTBEG00000002361	PSPC1	68	74.352	ENSELUG00000003746	pspc1	78	74.006	Esox_lucius
ENSTBEG00000002361	PSPC1	100	75.816	ENSFCAG00000027841	PSPC1	98	86.458	Felis_catus
ENSTBEG00000002361	PSPC1	89	72.304	ENSFALG00000008750	PSPC1	88	74.304	Ficedula_albicollis
ENSTBEG00000002361	PSPC1	100	74.038	ENSFDAG00000002617	PSPC1	100	75.192	Fukomys_damarensis
ENSTBEG00000002361	PSPC1	88	56.264	ENSGMOG00000015074	pspc1	86	56.264	Gadus_morhua
ENSTBEG00000002361	PSPC1	88	73.019	ENSGALG00000017142	PSPC1	89	74.304	Gallus_gallus
ENSTBEG00000002361	PSPC1	72	65.067	ENSGAFG00000006327	pspc1	67	71.077	Gambusia_affinis
ENSTBEG00000002361	PSPC1	88	56.858	ENSGACG00000014901	pspc1	91	66.564	Gasterosteus_aculeatus
ENSTBEG00000002361	PSPC1	94	70.243	ENSGAGG00000019164	PSPC1	89	74.090	Gopherus_agassizii
ENSTBEG00000002361	PSPC1	68	63.920	ENSGAGG00000017325	-	54	62.500	Gopherus_agassizii
ENSTBEG00000002361	PSPC1	100	75.908	ENSGGOG00000003414	PSPC1	98	87.306	Gorilla_gorilla
ENSTBEG00000002361	PSPC1	99	54.935	ENSHBUG00000001139	pspc1	87	60.087	Haplochromis_burtoni
ENSTBEG00000002361	PSPC1	100	75.526	ENSHGLG00000018811	PSPC1	100	75.816	Heterocephalus_glaber_female
ENSTBEG00000002361	PSPC1	68	81.556	ENSHGLG00100007962	PSPC1	100	81.556	Heterocephalus_glaber_male
ENSTBEG00000002361	PSPC1	67	67.347	ENSHCOG00000013251	pspc1	77	65.306	Hippocampus_comes
ENSTBEG00000002361	PSPC1	67	75.439	ENSIPUG00000013192	pspc1	88	62.393	Ictalurus_punctatus
ENSTBEG00000002361	PSPC1	100	75.717	ENSSTOG00000026833	PSPC1	98	86.010	Ictidomys_tridecemlineatus
ENSTBEG00000002361	PSPC1	100	75.479	ENSJJAG00000018334	Pspc1	100	76.437	Jaculus_jaculus
ENSTBEG00000002361	PSPC1	56	61.806	ENSKMAG00000013525	-	84	47.046	Kryptolebias_marmoratus
ENSTBEG00000002361	PSPC1	78	64.662	ENSLBEG00000004474	pspc1	88	57.113	Labrus_bergylta
ENSTBEG00000002361	PSPC1	88	66.812	ENSLACG00000010762	PSPC1	88	68.330	Latimeria_chalumnae
ENSTBEG00000002361	PSPC1	88	67.826	ENSLOCG00000010832	pspc1	90	69.130	Lepisosteus_oculatus
ENSTBEG00000002361	PSPC1	100	74.904	ENSLAFG00000010968	PSPC1	100	75.479	Loxodonta_africana
ENSTBEG00000002361	PSPC1	100	75.908	ENSMFAG00000032728	PSPC1	93	88.589	Macaca_fascicularis
ENSTBEG00000002361	PSPC1	100	75.908	ENSMMUG00000020262	PSPC1	99	80.087	Macaca_mulatta
ENSTBEG00000002361	PSPC1	100	75.908	ENSMNEG00000027401	PSPC1	99	80.087	Macaca_nemestrina
ENSTBEG00000002361	PSPC1	77	80.952	ENSMLEG00000039043	PSPC1	94	83.208	Mandrillus_leucophaeus
ENSTBEG00000002361	PSPC1	88	57.884	ENSMAMG00000004333	pspc1	88	58.737	Mastacembelus_armatus
ENSTBEG00000002361	PSPC1	95	48.837	ENSMZEG00005005726	pspc1	87	49.683	Maylandia_zebra
ENSTBEG00000002361	PSPC1	77	77.340	ENSMGAG00000015134	PSPC1	99	79.750	Meleagris_gallopavo
ENSTBEG00000002361	PSPC1	89	74.620	ENSMAUG00000021067	Pspc1	99	72.294	Mesocricetus_auratus
ENSTBEG00000002361	PSPC1	100	77.969	ENSMICG00000013970	PSPC1	98	87.532	Microcebus_murinus
ENSTBEG00000002361	PSPC1	100	75.908	ENSMOCG00000006060	Pspc1	100	75.717	Microtus_ochrogaster
ENSTBEG00000002361	PSPC1	63	49.536	ENSMMOG00000004352	pspc1	58	46.154	Mola_mola
ENSTBEG00000002361	PSPC1	94	76.446	ENSMODG00000008029	PSPC1	78	75.826	Monodelphis_domestica
ENSTBEG00000002361	PSPC1	88	59.957	ENSMALG00000008914	pspc1	87	59.957	Monopterus_albus
ENSTBEG00000002361	PSPC1	100	75.717	MGP_CAROLIEiJ_G0019341	Pspc1	99	79.914	Mus_caroli
ENSTBEG00000002361	PSPC1	100	76.099	ENSMUSG00000021938	Pspc1	99	79.914	Mus_musculus
ENSTBEG00000002361	PSPC1	100	75.908	MGP_PahariEiJ_G0030359	Pspc1	99	79.914	Mus_pahari
ENSTBEG00000002361	PSPC1	100	75.908	MGP_SPRETEiJ_G0020232	Pspc1	99	79.698	Mus_spretus
ENSTBEG00000002361	PSPC1	100	75.816	ENSMPUG00000013347	PSPC1	100	77.543	Mustela_putorius_furo
ENSTBEG00000002361	PSPC1	100	73.664	ENSMLUG00000017663	PSPC1	100	75.954	Myotis_lucifugus
ENSTBEG00000002361	PSPC1	100	76.437	ENSNGAG00000011271	Pspc1	100	74.952	Nannospalax_galili
ENSTBEG00000002361	PSPC1	74	57.500	ENSNBRG00000014059	pspc1	76	61.890	Neolamprologus_brichardi
ENSTBEG00000002361	PSPC1	100	75.717	ENSNLEG00000001294	PSPC1	100	77.672	Nomascus_leucogenys
ENSTBEG00000002361	PSPC1	59	95.833	ENSMEUG00000000476	PSPC1	67	95.833	Notamacropus_eugenii
ENSTBEG00000002361	PSPC1	100	62.193	ENSODEG00000007817	-	100	62.049	Octodon_degus
ENSTBEG00000002361	PSPC1	100	65.840	ENSODEG00000019012	-	100	70.307	Octodon_degus
ENSTBEG00000002361	PSPC1	99	55.019	ENSONIG00000012010	pspc1	87	60.390	Oreochromis_niloticus
ENSTBEG00000002361	PSPC1	77	60.553	ENSOANG00000011381	-	99	50.193	Ornithorhynchus_anatinus
ENSTBEG00000002361	PSPC1	77	79.950	ENSOANG00000009017	-	100	82.206	Ornithorhynchus_anatinus
ENSTBEG00000002361	PSPC1	100	74.379	ENSOCUG00000006153	PSPC1	100	77.438	Oryctolagus_cuniculus
ENSTBEG00000002361	PSPC1	88	60.613	ENSORLG00000004232	-	92	56.148	Oryzias_latipes
ENSTBEG00000002361	PSPC1	88	59.081	ENSORLG00020000578	PSPC1	92	56.557	Oryzias_latipes_hni
ENSTBEG00000002361	PSPC1	88	61.050	ENSORLG00015017480	pspc1	92	56.557	Oryzias_latipes_hsok
ENSTBEG00000002361	PSPC1	100	76.527	ENSOGAG00000012643	PSPC1	100	77.247	Otolemur_garnettii
ENSTBEG00000002361	PSPC1	100	71.073	ENSOARG00000014163	PSPC1	100	72.797	Ovis_aries
ENSTBEG00000002361	PSPC1	89	69.247	ENSPPAG00000009836	PSPC1	93	88.415	Pan_paniscus
ENSTBEG00000002361	PSPC1	100	75.816	ENSPPRG00000008833	PSPC1	100	77.543	Panthera_pardus
ENSTBEG00000002361	PSPC1	100	68.269	ENSPTIG00000016917	PSPC1	100	69.615	Panthera_tigris_altaica
ENSTBEG00000002361	PSPC1	95	76.986	ENSPTRG00000005677	PSPC1	98	87.306	Pan_troglodytes
ENSTBEG00000002361	PSPC1	100	75.908	ENSPANG00000001992	PSPC1	91	88.589	Papio_anubis
ENSTBEG00000002361	PSPC1	85	66.059	ENSPKIG00000003578	pspc1	89	64.693	Paramormyrops_kingsleyae
ENSTBEG00000002361	PSPC1	99	67.803	ENSPSIG00000005168	PSPC1	89	73.876	Pelodiscus_sinensis
ENSTBEG00000002361	PSPC1	59	63.226	ENSPMGG00000015135	pspc1	85	63.107	Periophthalmus_magnuspinnatus
ENSTBEG00000002361	PSPC1	100	76.054	ENSPEMG00000015214	Pspc1	100	75.717	Peromyscus_maniculatus_bairdii
ENSTBEG00000002361	PSPC1	54	42.509	ENSPMAG00000004618	pspc1	79	44.015	Petromyzon_marinus
ENSTBEG00000002361	PSPC1	99	74.904	ENSPCIG00000017680	PSPC1	100	76.054	Phascolarctos_cinereus
ENSTBEG00000002361	PSPC1	97	55.985	ENSPFOG00000003362	pspc1	88	59.615	Poecilia_formosa
ENSTBEG00000002361	PSPC1	97	55.985	ENSPLAG00000011540	pspc1	87	59.615	Poecilia_latipinna
ENSTBEG00000002361	PSPC1	68	58.074	ENSPLAG00000004407	-	51	58.074	Poecilia_latipinna
ENSTBEG00000002361	PSPC1	97	55.792	ENSPMEG00000008322	pspc1	87	59.402	Poecilia_mexicana
ENSTBEG00000002361	PSPC1	97	55.985	ENSPREG00000007786	pspc1	87	59.615	Poecilia_reticulata
ENSTBEG00000002361	PSPC1	100	76.200	ENSPPYG00000005186	PSPC1	100	78.119	Pongo_abelii
ENSTBEG00000002361	PSPC1	58	99.387	ENSPCAG00000008314	-	59	99.387	Procavia_capensis
ENSTBEG00000002361	PSPC1	100	73.855	ENSPCOG00000014364	PSPC1	100	74.761	Propithecus_coquereli
ENSTBEG00000002361	PSPC1	100	74.808	ENSPVAG00000005036	PSPC1	100	75.769	Pteropus_vampyrus
ENSTBEG00000002361	PSPC1	99	47.523	ENSPNYG00000008893	pspc1	87	49.683	Pundamilia_nyererei
ENSTBEG00000002361	PSPC1	99	55.263	ENSPNAG00000016511	pspc1	92	60.041	Pygocentrus_nattereri
ENSTBEG00000002361	PSPC1	100	76.245	ENSRNOG00000020782	Pspc1	99	80.043	Rattus_norvegicus
ENSTBEG00000002361	PSPC1	93	74.949	ENSRBIG00000036057	PSPC1	95	86.127	Rhinopithecus_bieti
ENSTBEG00000002361	PSPC1	100	76.099	ENSRROG00000036334	PSPC1	98	86.788	Rhinopithecus_roxellana
ENSTBEG00000002361	PSPC1	51	99.618	ENSSBOG00000028172	PSPC1	86	99.618	Saimiri_boliviensis_boliviensis
ENSTBEG00000002361	PSPC1	100	69.714	ENSSHAG00000004696	PSPC1	100	70.857	Sarcophilus_harrisii
ENSTBEG00000002361	PSPC1	77	71.970	ENSSFOG00015001395	pspc1	99	64.632	Scleropages_formosus
ENSTBEG00000002361	PSPC1	88	57.537	ENSSMAG00000001761	pspc1	82	69.486	Scophthalmus_maximus
ENSTBEG00000002361	PSPC1	78	66.917	ENSSDUG00000010651	pspc1	87	59.213	Seriola_dumerili
ENSTBEG00000002361	PSPC1	88	54.605	ENSSLDG00000004284	pspc1	86	52.814	Seriola_lalandi_dorsalis
ENSTBEG00000002361	PSPC1	100	68.846	ENSSARG00000000888	PSPC1	100	70.385	Sorex_araneus
ENSTBEG00000002361	PSPC1	99	57.547	ENSSPUG00000008550	PSPC1	90	61.945	Sphenodon_punctatus
ENSTBEG00000002361	PSPC1	65	57.988	ENSSPUG00000001136	-	50	56.509	Sphenodon_punctatus
ENSTBEG00000002361	PSPC1	88	59.129	ENSSPAG00000001921	pspc1	88	59.368	Stegastes_partitus
ENSTBEG00000002361	PSPC1	100	74.472	ENSSSCG00000009569	PSPC1	99	84.675	Sus_scrofa
ENSTBEG00000002361	PSPC1	89	72.304	ENSTGUG00000011295	PSPC1	100	74.304	Taeniopygia_guttata
ENSTBEG00000002361	PSPC1	88	54.428	ENSTRUG00000011335	pspc1	87	54.664	Takifugu_rubripes
ENSTBEG00000002361	PSPC1	88	56.236	ENSTNIG00000010358	pspc1	88	55.799	Tetraodon_nigroviridis
ENSTBEG00000002361	PSPC1	100	75.287	ENSTTRG00000003343	PSPC1	100	76.054	Tursiops_truncatus
ENSTBEG00000002361	PSPC1	68	85.143	ENSUAMG00000012309	PSPC1	99	85.345	Ursus_americanus
ENSTBEG00000002361	PSPC1	93	74.743	ENSUMAG00000013993	PSPC1	93	88.253	Ursus_maritimus
ENSTBEG00000002361	PSPC1	77	80.702	ENSVPAG00000010029	PSPC1	100	82.957	Vicugna_pacos
ENSTBEG00000002361	PSPC1	100	75.816	ENSVVUG00000006414	PSPC1	100	86.719	Vulpes_vulpes
ENSTBEG00000002361	PSPC1	72	64.800	ENSXCOG00000017438	pspc1	77	70.462	Xiphophorus_couchianus
ENSTBEG00000002361	PSPC1	72	65.067	ENSXMAG00000007929	pspc1	77	70.769	Xiphophorus_maculatus