EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000002777 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Minus strand
Length: 91516 bases
Position: chrGeneScaffold_3642:64591-156106
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000002438	EST1	PF10374.9	2.2e-16	1	1
ENSTBEP00000002438	EST1_DNA_bind	PF10373.9	1.2e-26	1	2
ENSTBEP00000002438	EST1_DNA_bind	PF10373.9	1.2e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000002814	SMG5-201	3027	-	ENSTBEP00000002438	1008 (aa)	-	UPI0000F5EE3A

Gene Model

Click here to download ENSTBEG00000002777's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000002777's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000002777	SMG5	60	100.000	ENSG00000198952	SMG5	60	100.000	Homo_sapiens
ENSTBEG00000002777	SMG5	58	84.236	ENSAPOG00000019690	smg5	59	84.236	Acanthochromis_polyacanthus
ENSTBEG00000002777	SMG5	57	97.044	ENSAMEG00000014458	SMG5	59	97.044	Ailuropoda_melanoleuca
ENSTBEG00000002777	SMG5	58	84.236	ENSACIG00000001353	smg5	57	84.236	Amphilophus_citrinellus
ENSTBEG00000002777	SMG5	58	84.236	ENSAOCG00000019483	smg5	53	84.236	Amphiprion_ocellaris
ENSTBEG00000002777	SMG5	58	84.236	ENSAPEG00000022949	smg5	59	84.236	Amphiprion_percula
ENSTBEG00000002777	SMG5	58	84.729	ENSATEG00000005348	smg5	57	84.729	Anabas_testudineus
ENSTBEG00000002777	SMG5	59	97.537	ENSAPLG00000010263	SMG5	57	97.537	Anas_platyrhynchos
ENSTBEG00000002777	SMG5	60	100.000	ENSANAG00000032899	SMG5	60	100.000	Aotus_nancymaae
ENSTBEG00000002777	SMG5	58	84.236	ENSACLG00000009311	smg5	58	84.236	Astatotilapia_calliptera
ENSTBEG00000002777	SMG5	58	84.729	ENSAMXG00000024616	smg5	53	84.729	Astyanax_mexicanus
ENSTBEG00000002777	SMG5	60	100.000	ENSBTAG00000009435	SMG5	60	100.000	Bos_taurus
ENSTBEG00000002777	SMG5	56	61.702	ENSBTAG00000021747	-	56	61.702	Bos_taurus
ENSTBEG00000002777	SMG5	60	100.000	ENSCJAG00000005684	SMG5	60	100.000	Callithrix_jacchus
ENSTBEG00000002777	SMG5	60	99.015	ENSCAFG00000016839	SMG5	60	99.015	Canis_familiaris
ENSTBEG00000002777	SMG5	60	99.015	ENSCAFG00020006061	SMG5	60	99.015	Canis_lupus_dingo
ENSTBEG00000002777	SMG5	60	100.000	ENSCHIG00000007709	SMG5	60	100.000	Capra_hircus
ENSTBEG00000002777	SMG5	56	59.799	ENSCHIG00000006323	-	58	59.799	Capra_hircus
ENSTBEG00000002777	SMG5	60	99.507	ENSTSYG00000004099	SMG5	60	99.507	Carlito_syrichta
ENSTBEG00000002777	SMG5	60	98.030	ENSCPOG00000015696	SMG5	60	98.030	Cavia_porcellus
ENSTBEG00000002777	SMG5	60	100.000	ENSCCAG00000027409	SMG5	60	100.000	Cebus_capucinus
ENSTBEG00000002777	SMG5	60	100.000	ENSCATG00000030539	SMG5	60	100.000	Cercocebus_atys
ENSTBEG00000002777	SMG5	60	100.000	ENSCLAG00000003983	SMG5	60	100.000	Chinchilla_lanigera
ENSTBEG00000002777	SMG5	60	100.000	ENSCSAG00000002120	SMG5	60	100.000	Chlorocebus_sabaeus
ENSTBEG00000002777	SMG5	59	97.044	ENSCPBG00000025848	SMG5	59	97.044	Chrysemys_picta_bellii
ENSTBEG00000002777	SMG5	50	38.906	ENSCING00000008706	-	56	38.906	Ciona_intestinalis
ENSTBEG00000002777	SMG5	60	100.000	ENSCANG00000029208	SMG5	60	100.000	Colobus_angolensis_palliatus
ENSTBEG00000002777	SMG5	60	99.507	ENSCGRG00001006336	Smg5	60	99.507	Cricetulus_griseus_chok1gshd
ENSTBEG00000002777	SMG5	57	99.507	ENSCGRG00000005111	Smg5	59	99.507	Cricetulus_griseus_crigri
ENSTBEG00000002777	SMG5	59	83.744	ENSCSEG00000014220	smg5	57	83.744	Cynoglossus_semilaevis
ENSTBEG00000002777	SMG5	56	62.637	ENSCVAG00000000529	smg5	56	63.325	Cyprinodon_variegatus
ENSTBEG00000002777	SMG5	58	83.744	ENSDARG00000041481	smg5	53	83.744	Danio_rerio
ENSTBEG00000002777	SMG5	51	44.910	ENSDNOG00000039862	-	58	44.910	Dasypus_novemcinctus
ENSTBEG00000002777	SMG5	60	100.000	ENSDNOG00000000051	SMG5	60	100.000	Dasypus_novemcinctus
ENSTBEG00000002777	SMG5	60	99.507	ENSDORG00000010382	Smg5	60	99.507	Dipodomys_ordii
ENSTBEG00000002777	SMG5	60	100.000	ENSEASG00005019122	SMG5	60	100.000	Equus_asinus_asinus
ENSTBEG00000002777	SMG5	60	100.000	ENSECAG00000001389	SMG5	60	100.000	Equus_caballus
ENSTBEG00000002777	SMG5	57	100.000	ENSEEUG00000012690	SMG5	59	100.000	Erinaceus_europaeus
ENSTBEG00000002777	SMG5	58	84.236	ENSELUG00000012585	smg5	58	84.236	Esox_lucius
ENSTBEG00000002777	SMG5	60	98.522	ENSFCAG00000011783	SMG5	60	98.522	Felis_catus
ENSTBEG00000002777	SMG5	57	99.015	ENSFDAG00000017388	SMG5	59	99.015	Fukomys_damarensis
ENSTBEG00000002777	SMG5	50	83.251	ENSFHEG00000013939	smg5	56	83.251	Fundulus_heteroclitus
ENSTBEG00000002777	SMG5	58	84.236	ENSGMOG00000007310	smg5	52	84.236	Gadus_morhua
ENSTBEG00000002777	SMG5	59	95.074	ENSGALG00000029918	-	56	95.074	Gallus_gallus
ENSTBEG00000002777	SMG5	50	83.744	ENSGAFG00000021691	smg5	50	83.744	Gambusia_affinis
ENSTBEG00000002777	SMG5	58	83.744	ENSGACG00000013142	smg5	53	83.744	Gasterosteus_aculeatus
ENSTBEG00000002777	SMG5	59	97.044	ENSGAGG00000016131	SMG5	56	97.044	Gopherus_agassizii
ENSTBEG00000002777	SMG5	60	100.000	ENSGGOG00000010932	SMG5	60	100.000	Gorilla_gorilla
ENSTBEG00000002777	SMG5	58	84.236	ENSHBUG00000008654	smg5	57	84.236	Haplochromis_burtoni
ENSTBEG00000002777	SMG5	60	98.030	ENSHGLG00000019152	SMG5	60	98.030	Heterocephalus_glaber_female
ENSTBEG00000002777	SMG5	50	75.980	ENSHCOG00000010229	smg5	56	75.980	Hippocampus_comes
ENSTBEG00000002777	SMG5	58	85.222	ENSIPUG00000006624	Smg5	53	85.222	Ictalurus_punctatus
ENSTBEG00000002777	SMG5	60	100.000	ENSSTOG00000001780	SMG5	60	100.000	Ictidomys_tridecemlineatus
ENSTBEG00000002777	SMG5	60	100.000	ENSJJAG00000022763	Smg5	60	100.000	Jaculus_jaculus
ENSTBEG00000002777	SMG5	58	84.729	ENSKMAG00000014586	smg5	52	84.729	Kryptolebias_marmoratus
ENSTBEG00000002777	SMG5	58	84.729	ENSLBEG00000002145	smg5	59	84.729	Labrus_bergylta
ENSTBEG00000002777	SMG5	58	84.236	ENSLACG00000010521	SMG5	56	84.236	Latimeria_chalumnae
ENSTBEG00000002777	SMG5	59	83.251	ENSLOCG00000008380	smg5	53	83.251	Lepisosteus_oculatus
ENSTBEG00000002777	SMG5	57	100.000	ENSLAFG00000006241	SMG5	57	100.000	Loxodonta_africana
ENSTBEG00000002777	SMG5	60	100.000	ENSMFAG00000045357	SMG5	60	100.000	Macaca_fascicularis
ENSTBEG00000002777	SMG5	60	100.000	ENSMMUG00000000090	SMG5	61	100.000	Macaca_mulatta
ENSTBEG00000002777	SMG5	60	100.000	ENSMNEG00000044425	SMG5	60	100.000	Macaca_nemestrina
ENSTBEG00000002777	SMG5	59	100.000	ENSMLEG00000041192	SMG5	61	100.000	Mandrillus_leucophaeus
ENSTBEG00000002777	SMG5	58	85.714	ENSMAMG00000010683	smg5	55	85.714	Mastacembelus_armatus
ENSTBEG00000002777	SMG5	58	84.236	ENSMZEG00005015815	smg5	57	84.236	Maylandia_zebra
ENSTBEG00000002777	SMG5	60	98.522	ENSMAUG00000010381	Smg5	60	98.522	Mesocricetus_auratus
ENSTBEG00000002777	SMG5	60	100.000	ENSMICG00000002257	SMG5	60	100.000	Microcebus_murinus
ENSTBEG00000002777	SMG5	57	99.507	ENSMOCG00000016590	Smg5	57	99.507	Microtus_ochrogaster
ENSTBEG00000002777	SMG5	58	76.847	ENSMMOG00000017199	smg5	52	76.847	Mola_mola
ENSTBEG00000002777	SMG5	57	39.231	ENSMODG00000010675	-	63	39.459	Monodelphis_domestica
ENSTBEG00000002777	SMG5	57	38.482	ENSMODG00000004735	-	64	39.344	Monodelphis_domestica
ENSTBEG00000002777	SMG5	58	37.726	ENSMODG00000004532	-	60	37.602	Monodelphis_domestica
ENSTBEG00000002777	SMG5	56	39.362	ENSMODG00000004511	-	57	39.510	Monodelphis_domestica
ENSTBEG00000002777	SMG5	58	80.296	ENSMALG00000010375	smg5	52	80.296	Monopterus_albus
ENSTBEG00000002777	SMG5	60	98.522	MGP_CAROLIEiJ_G0025163	Smg5	77	98.551	Mus_caroli
ENSTBEG00000002777	SMG5	60	98.522	ENSMUSG00000001415	Smg5	77	98.551	Mus_musculus
ENSTBEG00000002777	SMG5	57	98.522	MGP_PahariEiJ_G0026606	Smg5	77	98.551	Mus_pahari
ENSTBEG00000002777	SMG5	60	98.522	MGP_SPRETEiJ_G0026104	Smg5	77	98.551	Mus_spretus
ENSTBEG00000002777	SMG5	57	98.522	ENSMPUG00000004546	SMG5	62	98.522	Mustela_putorius_furo
ENSTBEG00000002777	SMG5	60	99.507	ENSMLUG00000008518	SMG5	60	99.507	Myotis_lucifugus
ENSTBEG00000002777	SMG5	60	100.000	ENSNGAG00000020706	Smg5	60	100.000	Nannospalax_galili
ENSTBEG00000002777	SMG5	56	60.526	ENSNGAG00000012101	-	57	60.526	Nannospalax_galili
ENSTBEG00000002777	SMG5	55	84.236	ENSNBRG00000004332	smg5	55	84.236	Neolamprologus_brichardi
ENSTBEG00000002777	SMG5	60	100.000	ENSNLEG00000012439	SMG5	60	100.000	Nomascus_leucogenys
ENSTBEG00000002777	SMG5	60	99.015	ENSMEUG00000012834	SMG5	60	99.015	Notamacropus_eugenii
ENSTBEG00000002777	SMG5	60	100.000	ENSOPRG00000009152	SMG5	60	100.000	Ochotona_princeps
ENSTBEG00000002777	SMG5	60	100.000	ENSODEG00000012237	SMG5	60	100.000	Octodon_degus
ENSTBEG00000002777	SMG5	58	84.236	ENSONIG00000008632	smg5	52	84.236	Oreochromis_niloticus
ENSTBEG00000002777	SMG5	57	99.015	ENSOCUG00000012886	SMG5	59	99.015	Oryctolagus_cuniculus
ENSTBEG00000002777	SMG5	58	84.236	ENSORLG00000016239	smg5	53	84.236	Oryzias_latipes
ENSTBEG00000002777	SMG5	58	83.744	ENSORLG00020013127	smg5	59	83.251	Oryzias_latipes_hni
ENSTBEG00000002777	SMG5	58	83.744	ENSORLG00015019014	smg5	59	83.251	Oryzias_latipes_hsok
ENSTBEG00000002777	SMG5	60	99.507	ENSOGAG00000004966	SMG5	60	99.507	Otolemur_garnettii
ENSTBEG00000002777	SMG5	60	100.000	ENSOARG00000005778	SMG5	60	100.000	Ovis_aries
ENSTBEG00000002777	SMG5	56	60.302	ENSOARG00000011963	-	58	60.302	Ovis_aries
ENSTBEG00000002777	SMG5	60	100.000	ENSPPAG00000011996	SMG5	60	100.000	Pan_paniscus
ENSTBEG00000002777	SMG5	57	98.522	ENSPPRG00000011901	SMG5	59	98.522	Panthera_pardus
ENSTBEG00000002777	SMG5	51	94.089	ENSPTIG00000007892	SMG5	54	94.089	Panthera_tigris_altaica
ENSTBEG00000002777	SMG5	60	100.000	ENSPTRG00000023925	SMG5	60	100.000	Pan_troglodytes
ENSTBEG00000002777	SMG5	60	100.000	ENSPTRG00000049282	-	60	100.000	Pan_troglodytes
ENSTBEG00000002777	SMG5	60	100.000	ENSPANG00000011201	SMG5	60	100.000	Papio_anubis
ENSTBEG00000002777	SMG5	59	83.251	ENSPKIG00000009402	smg5	54	83.251	Paramormyrops_kingsleyae
ENSTBEG00000002777	SMG5	59	97.537	ENSPSIG00000015198	SMG5	58	97.537	Pelodiscus_sinensis
ENSTBEG00000002777	SMG5	58	80.296	ENSPMGG00000010465	smg5	53	80.296	Periophthalmus_magnuspinnatus
ENSTBEG00000002777	SMG5	60	99.015	ENSPEMG00000001819	Smg5	60	99.015	Peromyscus_maniculatus_bairdii
ENSTBEG00000002777	SMG5	58	64.706	ENSPMAG00000000410	smg5	58	64.706	Petromyzon_marinus
ENSTBEG00000002777	SMG5	57	99.015	ENSPCIG00000018938	SMG5	60	99.015	Phascolarctos_cinereus
ENSTBEG00000002777	SMG5	58	83.744	ENSPFOG00000010191	smg5	52	83.744	Poecilia_formosa
ENSTBEG00000002777	SMG5	58	83.744	ENSPLAG00000009332	smg5	52	83.744	Poecilia_latipinna
ENSTBEG00000002777	SMG5	58	83.744	ENSPMEG00000014105	smg5	56	83.744	Poecilia_mexicana
ENSTBEG00000002777	SMG5	58	83.744	ENSPREG00000017713	smg5	52	83.889	Poecilia_reticulata
ENSTBEG00000002777	SMG5	60	100.000	ENSPPYG00000000723	SMG5	60	100.000	Pongo_abelii
ENSTBEG00000002777	SMG5	60	99.507	ENSPCOG00000004741	SMG5	60	99.507	Propithecus_coquereli
ENSTBEG00000002777	SMG5	54	93.333	ENSPVAG00000016748	SMG5	55	93.333	Pteropus_vampyrus
ENSTBEG00000002777	SMG5	58	83.744	ENSPNYG00000013397	smg5	53	83.744	Pundamilia_nyererei
ENSTBEG00000002777	SMG5	58	84.729	ENSPNAG00000028363	smg5	53	84.729	Pygocentrus_nattereri
ENSTBEG00000002777	SMG5	57	99.015	ENSRNOG00000019590	Smg5	60	99.015	Rattus_norvegicus
ENSTBEG00000002777	SMG5	60	100.000	ENSRBIG00000027428	SMG5	60	100.000	Rhinopithecus_bieti
ENSTBEG00000002777	SMG5	60	100.000	ENSRROG00000030035	SMG5	60	100.000	Rhinopithecus_roxellana
ENSTBEG00000002777	SMG5	60	100.000	ENSSBOG00000033339	SMG5	60	100.000	Saimiri_boliviensis_boliviensis
ENSTBEG00000002777	SMG5	57	42.786	ENSSHAG00000009572	-	59	42.786	Sarcophilus_harrisii
ENSTBEG00000002777	SMG5	57	99.015	ENSSHAG00000014163	SMG5	59	99.015	Sarcophilus_harrisii
ENSTBEG00000002777	SMG5	56	40.000	ENSSHAG00000000561	-	63	40.000	Sarcophilus_harrisii
ENSTBEG00000002777	SMG5	59	82.266	ENSSFOG00015024175	smg5	57	82.266	Scleropages_formosus
ENSTBEG00000002777	SMG5	58	84.236	ENSSMAG00000013059	smg5	52	84.236	Scophthalmus_maximus
ENSTBEG00000002777	SMG5	58	84.236	ENSSDUG00000007122	smg5	52	84.236	Seriola_dumerili
ENSTBEG00000002777	SMG5	58	84.236	ENSSLDG00000011418	smg5	55	84.236	Seriola_lalandi_dorsalis
ENSTBEG00000002777	SMG5	58	95.567	ENSSPUG00000002260	SMG5	59	95.567	Sphenodon_punctatus
ENSTBEG00000002777	SMG5	58	84.729	ENSSPAG00000014266	smg5	57	84.729	Stegastes_partitus
ENSTBEG00000002777	SMG5	61	100.000	ENSSSCG00000006490	-	61	100.000	Sus_scrofa
ENSTBEG00000002777	SMG5	55	78.771	ENSSSCG00000039308	-	58	78.075	Sus_scrofa
ENSTBEG00000002777	SMG5	59	96.552	ENSTGUG00000003748	-	57	96.552	Taeniopygia_guttata
ENSTBEG00000002777	SMG5	58	83.744	ENSTRUG00000012580	smg5	58	83.744	Takifugu_rubripes
ENSTBEG00000002777	SMG5	58	83.251	ENSTNIG00000010303	smg5	57	83.251	Tetraodon_nigroviridis
ENSTBEG00000002777	SMG5	60	100.000	ENSTTRG00000001401	SMG5	60	100.000	Tursiops_truncatus
ENSTBEG00000002777	SMG5	60	98.522	ENSUAMG00000013721	SMG5	60	98.522	Ursus_americanus
ENSTBEG00000002777	SMG5	57	93.659	ENSUMAG00000018041	SMG5	59	93.204	Ursus_maritimus
ENSTBEG00000002777	SMG5	59	99.507	ENSVPAG00000009446	SMG5	60	99.507	Vicugna_pacos
ENSTBEG00000002777	SMG5	60	99.015	ENSVVUG00000005887	SMG5	60	99.015	Vulpes_vulpes
ENSTBEG00000002777	SMG5	58	83.251	ENSXMAG00000013499	smg5	57	83.251	Xiphophorus_maculatus